BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26840.1
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484460 jgi|Araly1|484460|fgenesh2_kg.5__452__AT3G26840.1 3142 0.0
Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438 2422 0.0
Ahg896560 jgi|Araly1|896560|Al_scaffold_0005_526 252 1e-65
> Ahg484460 jgi|Araly1|484460|fgenesh2_kg.5__452__AT3G26840.1
Length=2258
Score = 3142 bits (1701), Expect = 0.0
Identities = 2040/2202 (93%), Gaps = 29/2202 (1%)
Strand=Plus/Plus
Query 1 AGAGCTTCTCACAAATGGCTGTTACAGTACTTCCTTCCGTCTCCGGTCTCTCTGCCGTCG 60
||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 1 AGAGCTTCTCACAAATGGCGGTTACAGTATTTCCCTCCGTCTCCGGTCTCTCTGCCGTCG 60
Query 61 CATCTTCATCGAACCTACGACGTCTGACCTCCGCCTCGAACCATCGACTCACGGCGATAA 120
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 61 CATCTTCATCAAACCTACGACGTCTGACCTCTGCCTCGAATCATCGACTCACGGCGATAA 120
Query 121 AATCCGTAACATCTACTTCTTCTCCTCCTACCCCTTCTAGTGGTGTTCAACGGAGACGGA 180
||||||||||||| || || ||| |||| | ||||||||||||||||||||| ||||
Sbjct 121 AATCCGTAACATCGAC-TC--CTCTTCCT---CTTTCTAGTGGTGTTCAACGGAGTCGGA 174
Query 181 AGAATAATGATGAAAACAGAGCCACGGTGGCGAAGGTGGTGGAGAATCCGTATTCGAAAG 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AAAATAATGATGAAAACAGAGCCACGGTGGCGAAGGTGGTGGAGAATCCGTATTCGAAAA 234
Query 241 TGGAGGCGGCGCGTCCGGATTTGCAAAAGAGGTTGTCAGATTTTTTGGAAGAAGCTAGAG 300
| |||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 235 TTGAGGCGGCGCAACCGGATTTGCAGAAGAGCTTGTCGGATTTTTTTGAAGAAGCTAGAG 294
Query 301 AGTTCGTCGGAGATGGAGGAGGTCCACCTCGTTGGTTCTCTCCATTGGAGTGTGGCGCTC 360
| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 295 ATTTCGTCGGAGATAGAGGAGGTCCACCTCGTTGGTTCTCTCCGTTGGAGTGTAGCGCTC 354
Query 361 AAGCTACAAACTCTCCTCTTCTCCTATACTTACCTGGGATTGATGGAACTGGACTAGGTC 420
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 355 AAGCTCCAAACTCTCCTCTTCTCCTATACTTACCTGGGATCGATGGAACTGGACTAGGTC 414
Query 421 TTATTCGCCATCACAAGAAACTTGGGGAGATTTTTGATATATGGTGCCTGCACATACCAG 480
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 415 TCATTCGGCATCACAAGAAACTTGGGGAGATTTTTGATATATGGTGCCTTCACATTCCAG 474
Query 481 TCAGTGATCGTACTCCTGTTAAAGACTTGGTGAAGCTTATTGAGGAA-ACCGTTAAGTCA 539
|||| ||||| || |||||||||||||| |||||||||||||| ||| || ||||||||
Sbjct 475 TCAGCGATCGCACCCCTGTTAAAGACTTAGTGAAGCTTATTGA-GAAGACTGTTAAGTCG 533
Query 540 GAGAACTTTCGTTTACCAAATAGACCAATATATTTAGTTGGAGAATCTATTGGAGCATGT 599
||| || ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGTACAATCGGTTCCCAAATAGACCAATATATTTAGTTGGAGAATCTATTGGAGCATGT 593
Query 600 CTTGCTTTAGATGTTGCAGCCAGAAATCCCAACATCGATCTTTCTCTGATCTTGGTTAAT 659
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 CTTGCGTTAGATGTTGCAGCCAGGAATCCCAACATCGATCTTTCTCTGATCTTGGTTAAT 653
Query 660 CCAGCCACACATGTCAACAACTTCATGGT-GCAACCTCTATCAGGAATGCTAAATGTTTT 718
||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct 654 CCAGCCACACATGTCAACAACTTCA-CGTCGCAACCTCTATCAGGAATGCTGAATGTTTT 712
Query 719 ACCCGATGGTCTTCCAACGCTATTGGAAGATATCTTTGATTTTGGTTTTAAGCAAGGCGA 778
||| ||| | ||||||| |||||||||||||| |||| ||| | |||||||||||||
Sbjct 713 ACCAAATGATATTCCAACACTATTGGAAGATATATTTG-GTTT--TATTAAGCAAGGCGA 769
Query 779 TCCATTAACTGGGATGTTAGACGCTTTGTCGAATGAATTTTCTGTCCAGCGAATGGGCGG 838
|||| | || ||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 770 TCCACTGACCGGGATGTTAGATGCTTTGTCAAATGAATTTTCTGTCCAGC-AA------- 821
Query 839 AGTAGGTGGAGGGATGCTAAGAGATGTCCTTGCTGTTTCAGCTAATCTTCCTACTCTTAG 898
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 822 A-TGGGTGGAGGGATGCTAAGAGATCTCCTTGCTGTTTCAGCTAATCTTCCTACTCTTAG 880
Query 899 TAGGATGTTCCCTAAGGACACACTGCTTTGGAAGCTGGAAATGCTTAAGTATGCTATTGC 958
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 881 TAGGATGTTCCCTAAGGACACACTGCTTTGGAAGCTGGAAATGCTAAAGTCTGCTATTGC 940
Query 959 TTCTGTGAACTCTCACATATACTCAGTCAGAGCGGAAACACTCATACTTCTGAGTGGACG 1018
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TTCTGTGAATTCTCACATATACTCAGTCAGAGCGGAAACACTCATACTTCTGAGTGGACG 1000
Query 1019 CGATCATTGGCTCCTGAAGGAGGAAGACATTGACAGATACTCGCGCACGTTGCCAAAATG 1078
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CGATCAATGGCTGCTGAACAAGGAAGACATTGACAGATACTCGCGCACGTTGCCAAAATG 1060
Query 1079 TATTGTCCGTAAGCTCGACGACAATGGACAGTTTCCCCTTTTGGAGGATGGTGTAGATCT 1138
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1061 TATTGTCCGTAAGCTCGATGACAATGGACAGTTTCCCCTTTTGGAGGACGGCGTAGATCT 1120
Query 1139 TGCTACTATCATCAAGTGTACTTGTTTTTATCGCCGTGGGAAGTCTCACGATCACATTAC 1198
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GGCTACTATCATTAAGTGTACTTGTTTTTATCGCCGTGGGAAGTCTCACGATCACATTAC 1180
Query 1199 GGATTACATTATGCCTACCACATTTGAGTTAAAACAACAAGTAGACGATCACCGATTGCT 1258
|||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 1181 GGATTATATTATGCCTACTACATTTGAGTTAAAACAACAAATAGACGACCACCGATTACT 1240
Query 1259 AATGGATGGTACTTCTCCTGTAATGCTGTCAACTCTAGAAGACGGCACAGTTGTAAGGAG 1318
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1241 AATGGATGGTACTTCCCCTGTAATGTTGTCAACTCTAGAAGACGGCACAGTTGTAAGGAG 1300
Query 1319 CCTCGAAGGATTACCTTCAGAGGGACCTGTTTTGTACGTTGGCTATCACATGATATTGGG 1378
||| ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 1301 CCTAGAAGGATTACCTTCAGAGGGACCGGTTCTGTATGTTGGCTATCACATGATATTGGG 1360
Query 1379 ATTTGAGTTAGCTCCAATGGTAATTCAACTCATGACAGAGAGGAACATTCACCTGCGGGG 1438
||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1361 ATTTGAGTTAGCTCCAATGTTAACTCAACTCATGAAAGAGAGGAACATTCACCTGCGGGG 1420
Query 1439 TTTGGCACATCCCATGCTATTTAAGAATCTCCAAGACTCATTAGTCGACACGAAGATGTT 1498
|||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1421 TTTGGCACATCCGATGATATTTAAGAATCTTCAAGACTCGTTAGTCGACACGAAGATGTT 1480
Query 1499 TGACAAATATAAGATAATGGGTGGAGTTCCAGTCTCCCATTTCAATATCTACAAACTACT 1558
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1481 TGACAAATATAAGTTAATGGGTGGAGTTCCAGTCTCCCAGTTCAATATCTACAAACTACT 1540
Query 1559 GCGTGAAAAGGCTCATGTGCTTCTGTATCCTGGAGGTGTCCGTGAAGCTTTGCATAGAAA 1618
||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1541 TCGTGAAAAGTCTCACGTGCTTTTGTACCCTGGAGGTGTCCGTGAAGCTTTGCATAGAAA 1600
Query 1619 AGGTGAAGAATACAAGCTGTTTTGGCCAGAACGGTCCGAGTTTGTGAGAGTTGCATCTAA 1678
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1601 GGGTGAAGAATACAAGCTGTTTTGGCCAGAACGATCTGAGTTTGTAAGAGTTGCATCTAA 1660
Query 1679 ATTTGGAGCCAAAATTGTTCCTTTTGGTGTTGTTGGAGAAGACGATATCTGCGAAATTGT 1738
||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1661 ATTTGGAGCGAAAATCGTTCCTTTCGGTGTTGTTGGAGAAGACGACATCTGCGAAATTGT 1720
Query 1739 CCTGGATTCTAATGATCAAAGGAACATCCCTATCCTCAAGGATTTAATGGAAAAGGCAAC 1798
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1721 CCTAGATTCCAATGATCAAAGAAACATCCCTATCCTAAAGGATTTAATGGAAAAGGCAAC 1780
Query 1799 AAAGGACGCTGGCAACATAAGGGAAGGCGATGAGAGCGAATTGGGAAACCAAGAGTGCTA 1858
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1781 TAAGGACGCTGGGAACATAAGGGAAGGCGACGAGAGCGAATTGGGAAACCAAGATTGCTA 1840
Query 1859 TTTCCCAGGACTTGTACCTAAGATTCCAGGGCGGTTCTACTATTACTTTGGCAAACCAAT 1918
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1841 TTTCCCAGGACTGGTACCTAAGATTCCGGGGCGGTTCTACTATTACTTTGGAAAACCAAT 1900
Query 1919 AGAAACAGCAGGTAAGGAGAAAGAACTAAAAGACAAAGAGAAGGCACAAGAGCTCTACTT 1978
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1901 AGAAACAGCAGGTAAGGAGAAAGAGCTGAAAGACAAAGAAAAGGCACAAGAGCTTTACTT 1960
Query 1979 GCAAGTTAAA-TCTGAGGTAGAACAATGCATTGACTATTTAAAAGTGAAAAGAGAGAGTG 2037
|||||| ||| |||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 1961 GCAAGT-AAAGTCTGAGGTCGAACAATGCATTGCCTATTTAAAAGTAAAAAGAGAGAGTG 2019
Query 2038 ATCCCTACAGACACTTATTGCCTAGGATGTTGTATCAGGCCTCACATGGTTGGTCTTCTG 2097
|||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2020 ATCCTTACAGACACTTGTTGCCAAGGATGTTGTATCAAGCCTCACATGGTTGGTCTTCTG 2079
Query 2098 AAATTCCAACGTTTGATCTCTAAGT-CTCTCTTTGTACC----CACCCATTTAATCATGA 2152
||||||||||||||||||||||| | |||||||||||| ||| ||| |||||||||
Sbjct 2080 AAATTCCAACGTTTGATCTCTAAATTCTCTCTTTGTACTGTGGCACACATCTAATCATGA 2139
Query 2153 TGAATAGAGGTTCTAAGATTCTTTGGAGATCTAAGATCTTTA 2194
|| |||||||||||||||||||| |||||||||||||||||
Sbjct 2140 TGTTTAGAGGTTCTAAGATTCTTTAGAGATCTAAGATCTTTA 2181
> Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438
Length=2109
Score = 2422 bits (1311), Expect = 0.0
Identities = 1817/2056 (88%), Gaps = 56/2056 (3%)
Strand=Plus/Plus
Query 78 CGACGTCTGACCTCCGCCTCGAACCATCGACTCACGGCGATAAAATCCGTAACATCTACT 137
||||| | ||||||||||||||| || | |||||||||||| ||||||||||||||||
Sbjct 97 CGACGCCGGACCTCCGCCTCGAAGCAACAACTCACGGCGATCAAATCCGTAACATCTA-- 154
Query 138 TCTTCTCCTCCTACCCCTTCTAGTGGTGTTC-AACGGAGACGGAAGAATAATGATGAAAA 196
|| |||||||| |||||||| ||| ||| || | |||||||||||||| |||| |
Sbjct 155 -CTACTCCTCCT---CCTTCTAGGGGTATTCGAA-GTAGACGGAAGAATAAAGATG---A 206
Query 197 CAGAGCCACGGTGGCGAAGGTGGTGGAGAATCCGTATTCGAAAGTGGAGGCGGCGCGTCC 256
| | | | |||||||||||||| ||||||||| ||||| |||| ||||
Sbjct 207 -A-A---A------C----GTGGTGGAGAATCCATATTCGAAAATGGAGATGGCGGGTCC 251
Query 257 GGATTTGCA-AAAGAGGTTGTCAGATTTTTTGGAAGAAGCTAGAGAGTTCGTCGGAGATG 315
|||||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 252 TGATTTG-AGGAAGAGCTTGTCGGATTTTTTGGAGGAAGCGAGAGATTTCGTTAGAGATG 310
Query 316 GAGGAGGTCCACCTCGTTGGTTCTCTCCATTGGAGTG-TGGCGCTCAAGCTACAA-ACTC 373
|||| ||||||||||||||||||||||| ||||| || || ||||||||| ||| |||
Sbjct 311 GAGGTGGTCCACCTCGTTGGTTCTCTCCGTTGGAATGCAGG-GCTCAAGCT-CAAGGCTC 368
Query 374 TCCTCTTCTCCTATACTTACCTGGGATTGATGGAACTGGACTAGGTCTTATTCGCCATCA 433
|||||| ||||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 369 TCCTCTCCTCCTATTTTTACCAGGGATCGATGGAACTGGACTAGGTCTCATTCGCCATCA 428
Query 434 CAAGAAACTTGGGGAGATTTTTGATATATGGTGCCTGCACATACCAGTCAGTGATCGTAC 493
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 429 CAAGAAACTTGGGGAGATTTTTGATATATGGTGCCTTCACATTCCAGTCAGTGACCGTAC 488
Query 494 TCC-TGTTAAAGACTTGGTGAAGCTTATTGAGGA-AACCGTTAAGTCAGAGAACTTTCGT 551
||| | |||||||||| |||||||||||||| || || |||||||| ||||||| |||
Sbjct 489 TCCAT-TTAAAGACTTAGTGAAGCTTATTGA-GAGGACAGTTAAGTCGGAGAACTACCGT 546
Query 552 TTACCAAATAGACCAATATATTTAGTTGGAGAATCTATTGGAGCATGTCTTGCTTTAGAT 611
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 TTCCCAAATAGACCAATATATTTAGTTGGAGAATCTATTGGAGCATGTCTTGCGTTAGAT 606
Query 612 GTTGCAGCCAGAAATCCCAACATCGATCTTTCTCTGATCTTGGTTAATCCAGCCACACAT 671
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GTTGCAGCCAGGAATCCCAACATCGATCTTTCTCTGATCTTGGTTAATCCAGCCACACAT 666
Query 672 GTCAACAACTTCATGGTG-CAACCTCTATCAGGAATGCTAAATGTTTTACCCGATGGTCT 730
|||||||||||||| | |||||||||||||||||||| ||||||||||| ||||| |
Sbjct 667 GTCAACAACTTCATA-TCACAACCTCTATCAGGAATGCTGAATGTTTTACCAGATGGAAT 725
Query 731 TCCAACGCTATTGGAAGATATCTTTGATTTTGGTTTTAAGCAAGGCGATCCATTAACTGG 790
||| || ||||| ||||| | | |||| ||||||||| |||| |||||||| |||||
Sbjct 726 TCCCACACTATTAGAAGA---CGT--ATTT-GGTTTTAAGAAAGGTGATCCATTGACTGG 779
Query 791 GATGTTAGACGCTTTGTCGAATGAATTTTCTGTCCAGCGAATGGGCGGAGTAGGTGGAGG 850
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 AATGTTAGACGCTTTGTCAAATGAATTTTCTGTCCAGCGAATGGGCGGAGTGGGTGGAGG 839
Query 851 GATGCTAAGAGATGTCCTTGCTGTTTCAGCTAATCTTCCTACTCTT-AGTAGGATGTTCC 909
||||||||||||| || |||| ||||||||||||||||||||| || |||||||||||||
Sbjct 840 GATGCTAAGAGATCTCTTTGCAGTTTCAGCTAATCTTCCTACT-TTGAGTAGGATGTTCC 898
Query 910 CTAAGGACACACTGCTTTGGAAGCTGGAAATGCTTAAGTATGCTATTGCTTCTGTGAACT 969
||||||| ||||||||||||||||| || |||||||||| ||| ||| | ||||| || |
Sbjct 899 CTAAGGAGACACTGCTTTGGAAGCTTGAGATGCTTAAGTGTGCCATTTCATCTGTAAATT 958
Query 970 CTCACATATACTCAGTCAGAGCGGAAACACTCATACTTCTGAGTGGACGCGATCATTGGC 1029
||||||||||||| |||||||| |||||||| ||||||| |||||||||||||| |||
Sbjct 959 CTCACATATACTCGGTCAGAGCTGAAACACTGATACTTCCAAGTGGACGCGATCAATGGA 1018
Query 1030 TCC-TGAAGGAGGAAGACATTGACAGATACTCGCGCACGTTGCCAAAATGTATTGTCCGT 1088
| | | || ||||||||||| | |||||||||||| ||||||||||||||||| ||||||
Sbjct 1019 TGCAT-AATGAGGAAGACATAGTCAGATACTCGCGAACGTTGCCAAAATGTATAGTCCGT 1077
Query 1089 AAGCTCGACGACAATGGACAGTTTCCCCTTTTGGAGGATGGTGTAGATCTTGCTACTATC 1148
||||| || ||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 1078 AAGCTTGATGACAATGGACAGTTTCCCCTTTTGGAGGACAGCCTAGATCTGGCTACTATC 1137
Query 1149 ATCAAG-TGTACTTGTTTTTATCGCCGTGGGAAGTCTCACGATCACATTACGGATTACAT 1207
|||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1138 ATCAAGCT-TACTTGTTTTTATCGCCGTGGGAAGTCTCATGATCACATTTCGGATTACAT 1196
Query 1208 TATGCCTACCACATTTGAGTTAAAACAACAAGTAGACGATCACCGATTGCTAATGGATGG 1267
|| |||||| | ||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 1197 TAAACCTACCCCTTTTGAGTTACAACAACAATTAGACGAGCACCGATTGCTAATGGATGC 1256
Query 1268 TACTTCTCCTGTAATGCTGTCAACTCTAGAAGACGGCACAGTTGTAAGGAGCCTCGAAGG 1327
|| ||| ||||||||||| ||||||||||||||||| | | ||||||||||||| |||||
Sbjct 1257 TATTTCACCTGTAATGCTATCAACTCTAGAAGACGGTAGAATTGTAAGGAGCCTTGAAGG 1316
Query 1328 ATTACCTTCAGAGGGACCTGTTTTGTACGTTGGCTATCACATGATATTGGGATTTGAGTT 1387
|||||||||||||||||| ||| | || |||||||||||||||||||| |||||||||||
Sbjct 1317 ATTACCTTCAGAGGGACCGGTTGTATATGTTGGCTATCACATGATATTAGGATTTGAGTT 1376
Query 1388 AGCTCCAATGGTAA-TTCAACTCATGACAGAGAGGAACATTCACCTGCGGGGTTTGGCAC 1446
|||||||||||| || | ||| ||| |||||||||||||||| |||| |||||| |||
Sbjct 1377 GGCTCCAATGGTAGGTTTA-CTCCTGAAAGAGAGGAACATTCACATGCGTGGTTTGACAC 1435
Query 1447 ATCCCATGCTATTTAAGAATCTCCAAGACTCATTAGTCGACACGAAGATGTTTGACAAAT 1506
|||| ||| |||||| | || |||||||||| ||||||||| |||| |||||||||||||
Sbjct 1436 ATCCTATGGTATTTATGTATATCCAAGACTCGTTAGTCGACCCGAAAATGTTTGACAAAT 1495
Query 1507 ATAAGATAATGGGTGGAGTTCCAGTCTCCCATTTCAATATCTACAAACTACTGCGTGAAA 1566
||||| |||||||||| ||||| |||||| || | ||| ||||||||||| | |||| ||
Sbjct 1496 ATAAGTTAATGGGTGGGGTTCCTGTCTCCAATATGAATTTCTACAAACTATTACGTGGAA 1555
Query 1567 AGGCTCATGTGCTTCTGTATCCTGGAGGTGTCCGTGAAGCTTTGCATAGAAAAGGTGAAG 1626
|| |||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1556 AGTCTCACGTGCTTTTGTATCCTGGAGGTGTCCGTGAAGCCTTGCATAGAAAGGGTGAAG 1615
Query 1627 AATACAAGCTGTTTTGGCCAGAACGGTCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAG 1686
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1616 AATACAAGCTGTTCTGGCCAGAACGATCCGAGTTTGTGAGAGTTGCATCTAAATTTGGAG 1675
Query 1687 CCAAAATTGTTCCTTTTGGTGTTGTTGGAGAAGACGATATCTGCGAA-ATTGTCCTGGAT 1745
| ||||| |||||||||||||||||||||| |||||| |||| | || || |||||||||
Sbjct 1676 CGAAAATCGTTCCTTTTGGTGTTGTTGGAGTAGACGACATCTTC-AATATAGTCCTGGAT 1734
Query 1746 TCTAATGATCAAAGGAACATCCCTATCCTCAAGGATTTAATGGAAAAGGCAACAAAGGAC 1805
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 1735 TCTAATGATCAAAGGAACATCCCTATCTTGAACGATTTAATGGAAAAGGCAACAAAGGAC 1794
Query 1806 GCTGGCAACATAAGGGAAGGCGATGAGAGCGAATTGGGAAACCAAGAGTGCTATTTCCCA 1865
||||||||| ||||||||||||| || |||||||||||||||||||| |||||| |||||
Sbjct 1795 GCTGGCAACCTAAGGGAAGGCGACGAAAGCGAATTGGGAAACCAAGATTGCTATATCCCA 1854
Query 1866 GGACTTGTACCTAAGATTCCAGGGCGGTTCTACTATTACTTTGGCAAACCAATAGAAACA 1925
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1855 GGACTTGTACCTAAGATTCCAGGGCGGTTCTACTATTACTTTGGAAAACCAATAGACTTA 1914
Query 1926 GCAGGTAAGGAGAAAGAACTAAAAGACAAAGAGAAGGCACAAGAGCTCTACTTGCAAGTT 1985
||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 1915 GCAGGTAAGGAGAAAGAGCTGAAAGACAAAGAAAAGGCACAAGAGCTTTACTTGCAAGT- 1973
Query 1986 AAA-TCTGAGGTAGAACAATGCATTGACTATTTAAAAGTGAAAAGAGAGAGTGATCCCTA 2044
||| |||||||| ||||||||||| | |||||||||| ||||||||||||||||||| ||
Sbjct 1974 AAAGTCTGAGGTCGAACAATGCATCGCCTATTTAAAAATGAAAAGAGAGAGTGATCCTTA 2033
Query 2045 CAGACACTTATTGCCTAGGATGTTGTATCAGGCCTCACATGGTTGGTCTTCTGAAATTCC 2104
||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 2034 CAGACACTTGTTGCCAAGGATGTTGTATCAAGCCTCACATGGTTGGTCTTGTGAAATCCC 2093
Query 2105 AACGTTTGATCTCTAA 2120
||||||||||||||||
Sbjct 2094 AACGTTTGATCTCTAA 2109
> Ahg896560 jgi|Araly1|896560|Al_scaffold_0005_526
Length=267
Score = 252 bits (136), Expect = 1e-65
Identities = 174/193 (90%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 1928 AGGTAAGGAGAAAGAACTAAAAGACAAAGAGAAGGCACAAGAGCTCTACTTGCAAGTTAA 1987
||||||| ||||||| || ||||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 75 AGGTAAGAAGAAAGAGCTCAAAGACAAAGATAAGGCACAAAAGCTTTACTTGCAAGTCAA 134
Query 1988 ATCTGAGGTAGAACAATGCATTGACTATTTAAAAGTGAAAAGAGAGAGTGATCCCTACAG 2047
|||||||| ||| ||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 135 GTCTGAGGTCGAAGAATGCATCGCCTATTTAAAAGTGAAAAGAGAGAGTGATCCTTACAG 194
Query 2048 ACACTTATTGCCTAGGATGTTGTATCAGGCCTCACATGGTTGGTCTTCTGAAATTCCAAC 2107
| |||| ||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 195 AAACTTGTTGCCAAGGATGATGTATCAAGCCTCGCATGGTTGGTCTTCTGAAATTCCAAC 254
Query 2108 GTTTGATCTCTAA 2120
|||||||||||||
Sbjct 255 GTTTGATCTCTAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86731487865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5