BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27050.1 Length=803 Score E Sequences producing significant alignments: (Bits) Value Ahg936430 jgi|Araly1|936430|scaffold_500621.1 981 0.0 > Ahg936430 jgi|Araly1|936430|scaffold_500621.1 Length=589 Score = 981 bits (531), Expect = 0.0 Identities = 571/590 (97%), Gaps = 3/590 (1%) Strand=Plus/Plus Query 45 GAG-ttttttttttGGGGCAATGGCGTCGTCGCTGCAAAGCTCGGGGATGTTGACGAAAG 103 ||| || |||||||||||||||||||| |||||| |||||||| |||||||||||||||| Sbjct 1 GAGATTGTTTTTTTGGGGCAATGGCGTTGTCGCTACAAAGCTCTGGGATGTTGACGAAAG 60 Query 104 AGCAAATGGTTTATCTCTTTGATCGATTCGATTACTTGACTTCACAATCTGATGTGAAGA 163 |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| Sbjct 61 AGCAAATGGTTTATCTATTTGATAGATTCGATTACTTGACTTCACAGTCTGATGTGAAGA 120 Query 164 AACGAATCTCCGACGCTGTGGATGACAAACAGGAAGCTGTAGCGGTAACAACTGCTATTC 223 |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 121 AACGAATCTCCGACGCTGTGGAGGATAAACAGGAAGCTGTAGCGGTAACAACTGCGATTC 180 Query 224 AAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAA 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAA 240 Query 284 AGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCG 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCG 300 Query 344 CAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACAAGATGGATTTGAACAGAAAA 403 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 301 CAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACCAGATGGATTTGAACAGAAAA 360 Query 404 TGAAAGCACTACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAAT 463 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGAAAGCACAACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAAT 420 Query 464 TCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGG 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGG 480 Query 524 GTTTTGAGCCGGAGGCGTCTCTTTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAA 583 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 481 GTTTTGAGCCGGAGGCGTCGCTGTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAA 540 Query 584 GAGTTTCACCTGTTTTTGGAAGCAGATAGCTTTTC-AGTTCTCACAAGCT 632 ||||||| |||||||||||||||||||||||| || | |||||||||||| Sbjct 541 GAGTTTCGCCTGTTTTTGGAAGCAGATAGCTTCTCGA-TTCTCACAAGCT 589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29659629426 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5