BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27160.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484499 jgi|Araly1|484499|fgenesh2_kg.5__491__AT3G27160.1 1081 0.0
> Ahg484499 jgi|Araly1|484499|fgenesh2_kg.5__491__AT3G27160.1
Length=689
Score = 1081 bits (585), Expect = 0.0
Identities = 655/689 (95%), Gaps = 3/689 (0%)
Strand=Plus/Plus
Query 27 ttcttcttcttcttcCTCGCGACGCGTTAATGGCGGCTTCGTTCTCACTCACGAGCTTCA 86
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCTTCTTCCTCGCAACGCGTTAATGGCGGCTTCGTTCTCACTCACGAGCTTCA 60
Query 87 TCTCCTTCATCTCACCATTCAAATCTCAAACTAAACCTACACCACCACCAAATCTCACTC 146
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 61 TCTCCTTCATCTCACCATTCAAATCTCAAACCAAACCTACACCGCCACCAAACCTCACTC 120
Query 147 TTCCTTCTCCAACAATCTCCCAAAGGCGAAGAAATGATCTCGCTATCGAATCAATGGCGG 206
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 121 TTCCTTCTCCAACAATCTCCCAAAGGCGAAGAAATGATCTCGCCATCGAATCAATGTCGG 180
Query 207 TCGAAGAAACTTCCTCAACCGCTTCTTCACTTTCCTCTGAGCTTGCTTCCGTGATTTGTC 266
||||||| |||| ||||||||||||||| ||||||||||| | || || ||||||||||
Sbjct 181 TCGAAGAGTCTTCTTCAACCGCTTCTTCAATTTCCTCTGAGATCGCCTCTGTGATTTGTC 240
Query 267 CCTCGCTTGCTTACTCCAACACACTCTTCTTCAGTTCTGGATACAATGTGCAAGTGTTTG 326
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 241 CCTCGCTTGCTTACTCGAACACGCTCTTCTTCAGTTCTGGATACAACGTGCAAGTGTTTG 300
Query 327 TTGAAGATAATGAGTCAGAGGAGAGGCTTGTGAATCGATTTAGGAGAGAAGTGATGAGAA 386
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 TCGAAGATAATGAGTCAGAGGAGAGGCTTGTGAATCGATTTAGAAGAGAAGTGATGAGAA 360
Query 387 CTGGTGTTATACAGGAATGTAAGAGGAGAAGATACTTTGAGAATAAACAAGATGAGAAGA 446
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 361 CTGGTGTTATACAGGAATGTAAGAGAAGGAGATACTTTGAGAATAAACAAGATGAGAAGA 420
Query 447 AACGTAGGACTCGTGATGCTGCTAAGCGTAATAAGAAAAGGCGTCCTCAAGCAAGGTTTA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACGTAGGACTCGTGATGCTGCTAAGCGTAATAAGAAAAGGCGTCCTCAAGCAAGGTTTA 480
Query 507 CTCaagaaacaagagaagaagcagcagcagca--a-ctaagagtaagaaaaaagatgagg 563
||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 481 CTCAAGAAACAAGGGAAGAAGCAGCAGCAGCAGCAACTAAGAGTAAGAAAAAGGATGAGG 540
Query 564 aagaagaCAACTGGGAGATGCCTGGTGGAGATGTACCTTCTTGAAACACGATTTTAGTAT 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AAGAAGACAACTGGGAGATGCCTGGTGGAGATGTACCTTCTTGAAACACGATTTCAGTAA 600
Query 624 ATAAAATCTCCGGTCTTTTGATTAAATTTCGTATTATCCCGTTTTTATTACTTGGTACAT 683
||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 601 ATATAATCTCCGGCCTTTTGGTTAAATTTCGTATTATCCCGTTTTTATTACTTGTTACAT 660
Query 684 TGTGAGTTGGAAATGTGTTTACTGCATAT 712
||| ||||||||||| |||||||||||||
Sbjct 661 TGTAAGTTGGAAATGCGTTTACTGCATAT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5