BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27210.1 Length=1098 Score E Sequences producing significant alignments: (Bits) Value Ahg484504 jgi|Araly1|484504|fgenesh2_kg.5__496__AT3G27210.1 1099 0.0 > Ahg484504 jgi|Araly1|484504|fgenesh2_kg.5__496__AT3G27210.1 Length=905 Score = 1099 bits (595), Expect = 0.0 Identities = 798/887 (90%), Gaps = 49/887 (6%) Strand=Plus/Plus Query 25 TCGATCTCGTTTGATCATAATTTCTCAATC-AAA-T-T-TCT-T-TCTCTAAAAAGGTTT 78 ||||||||| |||||||||||| ||||||| ||| | | ||| | ||||| ||||||||| Sbjct 28 TCGATCTCG-TTGATCATAATTGCTCAATCAAAACTCTCTCTCTATCTCT-AAAAGGTTT 85 Query 79 TGCTCTTTATAAATTTATTTTGATTACTTATATTAA----T--CTATGAATGGGTTCGTC 132 | |||||| ||| ||| ||||||||| ||||| ||| | ||||||||||||||||| Sbjct 86 TTCTCTTTTTAACTTTGTTTTGATTATTTATA-TAATCTTTGCCTATGAATGGGTTCGTC 144 Query 133 TTCGTCGTCGTCGCTTAATAACTCTCCGATTAGAGCTGATAGTATGGTAACTCCAGAATC 192 | ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| Sbjct 145 -T--TCGTCGTCGCTTAATAATTCTCCGATTAGAGTTGATAGCATGGTAACTCCAGAATC 201 Query 193 TCAGATGACTGTGAACGATAACAAAAACGACAACGTTTCGATCTTGTCTCCTTCTGTCAA 252 || |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 202 TCCGATGACTGTGAAGGATAACAAAAACGACAACGTTTCGATCATGTCTCCTTC---CAA 258 Query 253 GAAAAGCTTTGAATCGCCAAGGAAGAGTA---C--TT-C-GA----T-T----C--CGGC 294 |||||| |||||||||||||||||||||| | || | || | | | |||| Sbjct 259 GAAAAGTTTTGAATCGCCAAGGAAGAGTACTTCGATTCCGGAGGTTTCTCCGACGACGGC 318 Query 295 GAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTCTCTTCATCCAAGAAAAGTTT 354 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 319 GAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTTTCTTCATCCAAGAAAAGTTT 378 Query 355 CGGAAGCAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGACTCCGACGA 414 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 379 TGGAAGTAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGATTCCGATGA 438 Query 415 TGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAG 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439 TGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAG 498 Query 475 CTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAAGAAGCCTTCCCG 534 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 499 CTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAGGAAGTCTTCCCG 558 Query 535 AGGCTCGTCTTCTCCAGCGCCACTTCCAAGGAGGAAGAAGCTTGGTGAGCTTTTCAGAGA 594 |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct 559 AGGCTCGTCTTCTCCAGCACCACTTCCAAGAAGGAAGAAGCTTGGTGAGCTATTCAGAGA 618 Query 595 CAGTATAAGAGAAGAACGAGAAGAAAGC---G--G----TTCATCGTCAGCTATAAGCAC 645 |||||||||||||||||||||||||||| | | |||||| |||||||||||||| Sbjct 619 CAGTATAAGAGAAGAACGAGAAGAAAGCTCTGAAGGCGGTTCATCCTCAGCTATAAGCAC 678 Query 646 TCCTTATCTATCAGGTGCTAACTCACGCGAATTCAATGACACCGCCATCGAAAAGGAAGA 705 ||||||||| || |||||||||||| | |||||||| |||| ||||||||| |||||||| Sbjct 679 TCCTTATCTCTCTGGTGCTAACTCAGGAGAATTCAACGACAACGCCATCGAGAAGGAAGA 738 Query 706 GAAGAAGAAGTCTAACTGGCATCATCATCGTTGTCTTCCTGGTTTCTCTTCATGTGGTGG 765 ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 739 GAAGAAGAAGTCTAATTGGCAGCATCATCGTTGTCTTCCTGGATTCTCTTCATGTGGTGG 798 Query 766 AAGTTTCATGGAGAGGAGGAAGAAGATGAGTTCTGAAACTCCAGTTGTTGCTGTGAAATG 825 |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| Sbjct 799 AAGTTTCATGGAGAGGAGGAAGAAGATGAGCTCTGAAACTCCGGTTGTTGCTTTGAAATG 858 Query 826 AGATGTAGAGATTAT-GAAATTTGGAAATGTTTTGTATATGAAAGAA 871 | ||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 859 AAATGTAGAGAATCTTGAAATTTGGAAATGTTTTGTATATGAAAGAA 905 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40905889941 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5