BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27250.1 Length=1187 Score E Sequences producing significant alignments: (Bits) Value Ahg484507 jgi|Araly1|484507|fgenesh2_kg.5__499__AT3G27250.1 1531 0.0 > Ahg484507 jgi|Araly1|484507|fgenesh2_kg.5__499__AT3G27250.1 Length=1143 Score = 1531 bits (829), Expect = 0.0 Identities = 1081/1193 (91%), Gaps = 56/1193 (5%) Strand=Plus/Plus Query 1 AGACACACagaaagactatagagaaagagagagaaagaaagaaagaaaa-a--gagtgag 57 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 1 AGACACACAGAAAGACTATAGAGAAAGAGAGAGAAAGAAAGAAAGAAAAGAGTGAGAGAG 60 Query 58 agtgtttgatgata-agagagaaagataaaaaaTGGATCAAGATGACTGGTTGGGAACGC 116 |||||||||| | | |||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 61 AGTGTTTGAT-A-AGAGAGAGAAAGAT-AAAAATGGATCAAGATGAGTGGTTGGGAACGC 117 Query 117 TAAGATACGCCGGTAAGGCGCAGGATAAAGTTTCCGTTGACGCTCTCATGCTCCGGTACC 176 ||||||| | |||||||||||||||||||| |||||||||||||||||||||| Sbjct 118 TAAGATA---C------GCGCAGGATAAAGTTTCCGTCGACGCTCTCATGCTCCGGTACC 168 Query 177 GTCCGATCGCTCCAAAGCCGACGACTGGTCAGCCATGTGGTGT-GGCAGATAACAACAAC 235 |||| |||||||| |||||||||||||||||| |||||||||| || ||||||||||||| Sbjct 169 GTCCCATCGCTCCGAAGCCGACGACTGGTCAGTCATGTGGTGTAGG-AGATAACAACAAC 227 Query 236 AATAGCTCATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 295 || | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 AACAACTTATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 287 Query 296 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 347 Query 356 GATGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 415 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 GAAGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 407 Query 416 TTGGATCAAGATAGTCTCGATCCGTCGGTGAAATCGATAATCGGAGAGGAAACACAAGAA 475 |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 408 TTGGATCAGGATAGTCTCGATCCATCGGTGAAAACGATAATCGGAGAGGAAACACAAGAA 467 Query 476 ACCAACACGTGGGGTATGTTTAACGGCAGCGTCACGGCGGAGATGGAGACGTGGGTGACG 535 ||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 468 ACCAACATGTGGGGTACGTTTAACGGCGGCGTCACGGCGGATATGGAGACGTGGGTTACG 527 Query 536 GTGGAGTCCGTCACAAGCGTGTGTGAGGGTAGTTTGAGTTCCCATGCGGTGGGGATTACG 595 |||||||| |||||||| || ||||| |||| |||||||||||||||||||||| ||||| Sbjct 528 GTGGAGTCTGTCACAAGTGTTTGTGATGGTATTTTGAGTTCCCATGCGGTGGGGTTTACG 587 Query 596 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGC 655 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGT 647 Query 656 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGAAATGTTTCCGGTGATGATTCA 715 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 648 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGGAATGTTTCCGGTGATGATTCA 707 Query 716 ACGGCGTCAGTATCGCCGGAAGTTGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 775 ||| || || || ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 708 ACGTCG---GTGTCCCCGGATGTCGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 764 Query 776 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 824 Query 836 ACAAAGTATACCAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGTTTTGCA 895 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 825 ACAAAGTATACAAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGCTTTGCA 884 Query 896 TGGAGGCTAGACACAACAGCTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCAAGTA 955 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | Sbjct 885 TGGAGGCTAGACACAACAACTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCGAG-A 943 Query 956 -ACATGCGGGTAAGATTGTTAAGATATGTGATTTTAGTGTGTGACTAATCACAAAATTAG 1014 ||||| |||||||||| ||| ||||||||||||| ||||| ||||| ||| || | Sbjct 944 CACATGAGGGTAAGATTACCAAGCTATGTGATTTTAGAGTGTGTCTAATG-CAACTTT-G 1001 Query 1015 TAATCGCTTCAAGCGCAACTTTGTTTAGACGAGTAAGAAGGAAGCAAATGATGCTAATGT 1074 | | | | | | || || |||||||||| |||||||||||||||| Sbjct 1002 T--T---T--A-G---A-CT------AG-----TAAGAAGGAAACAAATGATGCTAATGT 1038 Query 1075 TGAAAGAAGTGTGGAGGAGCCGGAAAGCTTAAATATATAGAACATATAGTAATAATGTCA 1134 || ||||||| |||| ||| |||||||||||||||||| | |||||||||||| Sbjct 1039 TGGAAGAAGTATGGAAAAGCTGGAAAGCTTAAATATATAC--C-----GTAATAATGTCA 1091 Query 1135 TATTTTTATTGGCAAAGACTAAACAAAAATATGCCATTGTATGGTTTCATACC 1187 ||| ||||||||||||||||||| |||| |||||||||||||||||| |||| Sbjct 1092 TATATTTATTGGCAAAGACTAAATAAAAG-ATGCCATTGTATGGTTTCGTACC 1143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44298829554 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5