BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27300.1
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322854 jgi|Araly1|322854|fgenesh1_pm.C_scaffold_5000398 2523 0.0
Ahg947665 jgi|Araly1|947665|scaffold_703894.1 1646 0.0
Ahg897151 jgi|Araly1|897151|Al_scaffold_0005_1117 388 6e-107
> Ahg322854 jgi|Araly1|322854|fgenesh1_pm.C_scaffold_5000398
Length=1566
Score = 2523 bits (1366), Expect = 0.0
Identities = 1494/1555 (96%), Gaps = 12/1555 (1%)
Strand=Plus/Plus
Query 141 TTCTGGTCAATGGCATATGGAGAAGAGGTCTACTTTAAAGAATGATTCGTTTGTAAAAGA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TTCTGGTCAATGGCATATGGAGAAGAGGTCTACTTTAAAGAATGATTCGTTTGTAAAAGA 74
Query 201 ATACAATCCAGTCACGGAAACTGGGAGTCTCTCTATCATTGTTCTTGGTGCTTCTGGTGA 260
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATACAATCCAGTCTCTGAAACTGGGAGTCTCTCTATCATTGTTCTTGGTGCTTCTGGTGA 134
Query 261 TCTTGCTAAGAAGAAGACTTTTCCTGCACTTTTCAATCTATT-TCATCAGGGATTTCTTA 319
|||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 135 TCTTGCTAAGAAGAAGACTTTTCCTGCACTTTTCCATCT-TTACCATCAGGGATTTCTTA 193
Query 320 ATCCAGATGAAGTTCATATATTTGGATATGCAAGGAGTAAGATTACTGATGAGGAGCTTA 379
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 194 ATCCAGATGAAGTTCATATATTTGGATATGCAAGGAGTAAGATTTCTGATGAGGAGCTTA 253
Query 380 GAGATAAAATCCGCGGATATCTTGTTGATGAGAAGAATGCATCTAAGAAAACAGAAGCTT 439
||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||||
Sbjct 254 GAGATAAAATCCGCGGATATCTTGTTGATGAGAGGAATGCATCTGACAAAGCAGAAGCTT 313
Query 440 TGTCCAAGTTTCTAAAGCTGATTAAGTATGTGAGTGGACCTTATGATTCTGAGGAAGGGT 499
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TGTCCAAGTTTTTAAAGCTGATTAAGTATGTGAGTGGACCTTATGATTCTGAGGAAGGGT 373
Query 500 TTAAGAGATTAGACAAGGCGATTTTGGAGCACGAGATATCTAAAAAGACTGCTGAAGGAT 559
||||||||||||| ||||||||| |||||||||||| ||||||| |||| |||||||||
Sbjct 374 TTAAGAGATTAGATGAGGCGATTTCGGAGCACGAGATCTCTAAAAGGACTTCTGAAGGAT 433
Query 560 CTTCGAGGAGATTGTTTTATCTTGCACTTCCTCCGTCTGTATACCCTCCTGTAAGCAAGA 619
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 434 CTTCTAGGAGATTGTTTTATCTTGCACTTCCGCCGTCTGTATACCCTCCTGTAAGCAAGA 493
Query 620 TGATCAAGGCATGGTGCACTAACAAATCTGATCTTGGTGGATGGACTAGGATTGTTGTTG 679
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 494 TGATCAAGGCATGGTGCACTAACAAATCTGATCTTGGTGGATGGACTCGGATCGTTGTTG 553
Query 680 AGAAACCATTTGGAAAGGATTTGGAATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGC-C 738
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 554 AGAAGCCGTTTGGAAAGGATTTGGAATCTGCAGAGCAACTGAGTTCTCAGATTGGGGCGC 613
Query 739 TTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAA 798
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 614 -TGTTTGATGAACCACAGATTTATCGTATTGATCACTATCTAGGAAAAGAATTAGTCCAA 672
Query 799 AACATGTTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAAT 858
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 673 AACATGTTGGTTCTTCGCTTTGCCAATCGTTTGTTTTTGCCACTATGGAACCGCGATAAT 732
Query 859 ATTGCAAACGTACAGATCGTTTTCAGAGAAGATTTTGGAACTGAAGGTCGCGGTGGATAT 918
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 733 ATTGCAAACGTACAGATCGTTTTCAGAGAAGATTTCGGAACTGAAGGTCGCGGGGGATAT 792
Query 919 TTTGATGAATACGGAATCATTCGTGATATTATTCAAAACCACTTGCT-C---C-AG-GTT 972
||||||||||||||||||||||| ||||||||||||||||||||||| | | || |||
Sbjct 793 TTTGATGAATACGGAATCATTCGCGATATTATTCAAAACCACTTGCTCCAGGCAAGTGTT 852
Query 973 CTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAG 1032
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 853 CTTTGCCTTGTTGCCATGGAGAAACCAATCTCCCTTAAACCCGAGCACATCCGGGATGAG 912
Query 1033 AAAGTGAAGGTTCTTCAATCTGTGATTCCCATAAAAGATGAAGAGGTGGTTCTTGGACAA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAAGTGAAGGTTCTTCAATCTGTGATTCCCATAAAAGATGAAGAGGTGGTTCTTGGACAA 972
Query 1093 TATGAAGGATATAGAGATGATCCAACTGTTCCAAATGACTCAAACACTCCAACGTTTGCC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TATGAAGGATATAGAGATGATCCAACTGTTCCAAATGACTCAAACACTCCAACGTTTGCC 1032
Query 1153 ACAACAATTCTTCGCATTA-ACAATGAAAGATGGGAAGGTGTTCCTTTTATACTGAAGGC 1211
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ACAACAATTCTTCGCAT-AGACAATGAAAGATGGGAAGGTGTTCCTTTTATACTGAAGGC 1091
Query 1212 CGGAAAGGCAATGAGTTCAAAGAAGGCAGATATTCGCATTCAGTTTAAAGATGTTCCTGG 1271
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1092 CGGAAAGGCAATGAGTTCAAAGAAGGCAGATATTCGCATTCAGTTTAAGGATGTTCCTGG 1151
Query 1272 CGACATATTCAAATGTCAAAACCAAGGGAGGAACGAGTTTGTTATACGCTTGCAGCCTTC 1331
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CGACATATTTAAATGTCAAAACCAAGGGAGGAACGAGTTTGTTATACGCTTGCAGCCTTC 1211
Query 1332 AGAGGCCATGTACATGAAGCTAACTGTGAAGCAACCGGGTCTGGAGATGCAAACCGTGCA 1391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1212 AGAGGCCATGTACATGAAGCTAACTGTGAAGCAACCGGGTCTGGAGATGCAAACTGTGCA 1271
Query 1392 GAGTGAACTAGACCTATCGTACAAGCAGCGTTACCAAGATGTCTCAATTCCAGAGGCTTA 1451
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1272 GAGTGAACTAGACCTGTCATACAAGCAGCGTTACCAAGATGTCTCGATTCCAGAGGCTTA 1331
Query 1452 CGAACGCCTTATTCTTGACACAATCAGAGGCGACCAACAACACTTTGTTCGCAGAGACGA 1511
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1332 CGAACGCCTTATTCTTGACACAATCAAAGGCGACCAACAACACTTTGTTCGCAGAGACGA 1391
Query 1512 ATTAAAGGCAGCTTGGGAAATCTTCACTCCACTGCTTCACAGGATCGACAAGGGAGAAGT 1571
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1392 ATTGAAGGCAGCTTGGGAAATCTTCACTCCATTGCTTCACAGGATCGACAAGGGAGAAGT 1451
Query 1572 GAAATCGGTCCCATACAAACAAGGTAGCCGTGGCCCAGCGGAAGCAGATCAGCTACTTAA 1631
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 AAAATCGATCCCATACAAACAAGGTAGCCGTGGCCCAGCGGAAGCAGATCAGCTACTTAA 1511
Query 1632 GAAAGCTGGTTATATGCAGACTCATGGCTACATTTGGATCCCTCCTACATTGTAA 1686
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1512 GAAAGCTGGTTATACGCAGACCCATGGCTACATTTGGATCCCTCCTACATTGTAA 1566
> Ahg947665 jgi|Araly1|947665|scaffold_703894.1
Length=1588
Score = 1646 bits (891), Expect = 0.0
Identities = 1349/1570 (86%), Gaps = 31/1570 (2%)
Strand=Plus/Plus
Query 132 GAAGATGGGTTCTGGTCAATGGCATATGGAGAAGAGGTCTACTTTAAAGAATGATTCGTT 191
||||||||| |||||||||||||| | ||||| ||||||||||| | ||||||||||||
Sbjct 17 GAAGATGGGATCTGGTCAATGGCACGTTGAGAAAAGGTCTACTTTTAGGAATGATTCGTT 76
Query 192 TGTAAAAGAATACAATCCAG-TCACGGAAACTGGGAGTCTCTCTATCATTGTTCTTGGTG 250
||||| |||||| | ||| || | |||||||| |||| || ||||| ||||||||||
Sbjct 77 TGTAAGAGAATATGGTACAGTTC-CAGAAACTGGTTGTCTTTCAATCATAGTTCTTGGTG 135
Query 251 CTTCTGGTGATCTTGCTAAGAAGAAGACTTTTCCTGCACTTTTCAATCTATTTCATCAGG 310
||||||||||||||||||||||||||||||||||||| ||||| || |||| | |||||
Sbjct 136 CTTCTGGTGATCTTGCTAAGAAGAAGACTTTTCCTGCTCTTTTTAACCTATACCGTCAGG 195
Query 311 GATTTCTTAATCCAGATGAAGTTCATATATTT-GGATATGCAAGGAGTAAGATTACTGAT 369
| ||||| |||||||||||||||||||| ||| || ||||| ||| ||||||| |||||
Sbjct 196 GGTTTCTCAATCCAGATGAAGTTCATAT-TTTCGGGTATGCGCGGACTAAGATTTCTGAT 254
Query 370 GAGGAGCTTAGAGATAAAATCCGCGGATATCTTGTTGATGAGAAGAATGCATCTAAGAAA 429
|| || || |||||| || || |||||||||||||||||||||||||| | | | ||
Sbjct 255 GAAGAACTGAGAGATCGGATTCGTGGATATCTTGTTGATGAGAAGAATGC-TG-A-GCAA 311
Query 430 ACAGAAGCTTTGTCCAAGTTTCTAAAGCTGATTAAGTATGTGAGTGGACCTTATGATTCT 489
| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 312 GCTGAAGCTTTGTCAAAGTTTCTACAGCTGATTAAGTATGTGAGTGGCCCTTATGATTCT 371
Query 490 GAGGAAGGGTTTAAGAGATTAGACAAGGCGATTTTGGAGCACGAGATATCTAAAAAGACT 549
||||| ||||| ||||||||||||| || |||| |||||||| || || ||||| | |
Sbjct 372 GAGGAGGGGTTCCAGAGATTAGACAATGCAATTTCAGAGCACGAAATCTCCAAAAATAGT 431
Query 550 GCTGAAGGATCTTCGAGGAGATTGTTTTATCTTGCACTTCCTCCGTCTGTATACCCTCCT 609
||||||| ||||| |||||| ||||||| ||||||||||| |||||||| || ||| ||
Sbjct 432 ACTGAAGGGTCTTCTAGGAGACTGTTTTACCTTGCACTTCCACCGTCTGTTTATCCTTCT 491
Query 610 GTAAGCAAGATGATCAAGGCATGGTGCACT-AACAAATCTGATCTTGGTGGATGGACTA- 667
||| |||||||||||||| | || |||| | |||||||||||||||||||||||||| |
Sbjct 492 GTATGCAAGATGATCAAGACGTGCTGCA-TGAACAAATCTGATCTTGGTGGATGGAC-AC 549
Query 668 GGATTGTTGTTGAGAAACCATTTGGAAAGGATTTGGAATCTGCAGAGCAGCTGAGTTCTC 727
|||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 550 GGATTGTTGTTGAGAAGCCATTTGGCAAGGACCTGGAATCTGCAGAGCAACTGAGTTCTC 609
Query 728 AGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCT-GGGAAAA 786
||||||||| |||||||| ||| ||||||| |||||||| || || ||||| ||||||
Sbjct 610 AGATTGGAGAGTTGTTTGATGAATCACAGATCTATCGTATAGACCATTATCTTGGGAAA- 668
Query 787 GAGTTAGTTCAAAACATGTTGGTTCTTCGGTTTGCCAATCGCTTGTTT-TTGCCACTATG 845
|| || ||||||||||||||||| || || |||||||||||||| ||| |||||||| ||
Sbjct 669 GAATTGGTTCAAAACATGTTGGTCCTCCGATTTGCCAATCGCTT-TTTCTTGCCACTTTG 727
Query 846 GAACCGCGACAATATTGCA-AACGTACAGATCGTTTTCAGAGAAGATTTTGGAACTGAAG 904
|||||| |||||||| | | ||||| ||||| |||||||| |||||||||||||||||||
Sbjct 728 GAACCGTGACAATATCG-AGAACGTGCAGATTGTTTTCAGGGAAGATTTTGGAACTGAAG 786
Query 905 GTCGCGGTGGATATTTTGATGAATACGGAATCATTCGTGATATTATTCAAAACCA-CTTG 963
| || || ||||||||||||||||| ||||| || |||||||||||||||||||| || |
Sbjct 787 GGCGTGGCGGATATTTTGATGAATATGGAATAATCCGTGATATTATTCAAAACCATCT-G 845
Query 964 CTCCAGGTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATC 1023
|| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 846 CTACAGGTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCACATC 905
Query 1024 CGGGATGAGAAAGTGAAGGTTCTTCAATCTGTGATTCCCATAAAAGATGAAGAGGTGGTT 1083
|||||||||||||||||||| |||||||| ||| |||| |||| ||||| ||||| |||
Sbjct 906 CGGGATGAGAAAGTGAAGGTGCTTCAATCGGTGGTTCCGATAAGCGATGACGAGGTAGTT 965
Query 1084 CTTGGACAATATGAAGGATATAGAGATGATCCAACTGTTCCAAATGACTCAAACACTCCA 1143
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||
Sbjct 966 CTTGGACAATATGAAGGATATAGGGATGATTCTACTGTTCCAAACGACTCAAACACTCCA 1025
Query 1144 ACGTTTGCCACAACAATTCTTCGCATTA-ACAATGAAAGATGGGAAGGTGTTCCTTTTAT 1202
|| ||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 1026 ACATTTGCCACAACGATTCTTCGCAT-ACACAATGAAAGATGGGAAGGTGTTCCATTTAT 1084
Query 1203 ACTGAAGGCCGGAAAGGCAATGAGTTCAAAGAAGGCAGATATTCGCATTCAGTTTAAAGA 1262
|| |||||||||||||| ||| ||||| ||||||||| ||| | |||||||| || ||
Sbjct 1085 TCTAAAGGCCGGAAAGGCGTTGAATTCAAGGAAGGCAGAAATTAGAATTCAGTTCAAGGA 1144
Query 1263 TGTTCCTGGCGACATATTCAAATGTCAAAACCAAGGGAGGAACGAGTTTGTTATACGCTT 1322
|||||| ||||| |||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 1145 TGTTCCAGGCGATATATTCAAATGTCAGAAGCAAGGAAGGAACGAGTTTGTGATACGCTT 1204
Query 1323 GCAGCCTTCAGAGGCCATGTACATGAAGCTAACTGTGAAGCAACCGGGTCTGGAGATGCA 1382
||| ||||||||||| ||||||||||| |||||||| |||||||| ||||| |||||| |
Sbjct 1205 GCAACCTTCAGAGGCAATGTACATGAAACTAACTGTTAAGCAACCAGGTCTAGAGATG-A 1263
Query 1383 A-ACCGTGCAGAGTGAACTAGACCTATCGTACAAGCAGCGTTACCAAGATGTCTCAATTC 1441
| || ||||| |||||||| ||| | ||||| ||| || || |||| |||| | || |
Sbjct 1264 ATACTGTGCAAAGTGAACTGGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCGATCC 1323
Query 1442 CAGAGGCTTACGAACGCCTTA-TTCTTGACACAATCAGAGGCGACCAACAACACTTT-GT 1499
| ||||| ||||| ||| ||| ||||||||||||||| |||||| |||||||| ||| ||
Sbjct 1324 CTGAGGCATACGAGCGC-TTAATTCTTGACACAATCAAAGGCGATCAACAACA-TTTCGT 1381
Query 1500 TCGCAGAGACGAATTAAAGGCAGCTTGGGAAATCTTCACTCCACTGCTTCACAGGATCGA 1559
||| |||||||||||||||| || ||||| |||||||| || || ||||||||||||||
Sbjct 1382 TCGTAGAGACGAATTAAAGGTTGCGTGGGAGATCTTCACGCCGCTACTTCACAGGATCGA 1441
Query 1560 CAAGGGAGAAGTGAAATCGGTCCCATACAAACAAGGTAGCCGTGGCCC-AGCGGAAGCAG 1618
||| ||||||||||| || |||||||||||| ||| ||||| || || | | |||| |
Sbjct 1442 CAAAGGAGAAGTGAAGTCAATCCCATACAAACCAGGAAGCCGAGGACCGAAAG-AAGCTG 1500
Query 1619 ATCAGCTACTT-AAGAAAGCTGGTTATATGCAGACTCATGGCTACATTTGGATCCCTCCT 1677
|||||||||| || |||||||||||| | || ||||||||||| || ||||||||||||
Sbjct 1501 ATCAGCTACTAGAA-AAAGCTGGTTATCTTCAAACTCATGGCTATATCTGGATCCCTCCT 1559
Query 1678 ACATTGTAAA 1687
||| | ||||
Sbjct 1560 ACACTATAAA 1569
> Ahg897151 jgi|Araly1|897151|Al_scaffold_0005_1117
Length=273
Score = 388 bits (210), Expect = 6e-107
Identities = 254/275 (92%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 1429 GATGTCTCAATTCCAGAGGCTTACGAACGCCTTATTCTTGACACAATCAGAGGCGACCAA 1488
|||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GATGTCTCGATTCTAGAGGCTTACGAACGCCTTATTCTTGACATAATCAGAGGCGACCAA 60
Query 1489 CAACACTTTGTTCGCAGAGACGAATTAAAGGCAGCTTGGGAAATCTTCACTCCACTGCTT 1548
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 CAACACTTTGTTCGCAGAGACGAATTAAAGACAGGTTGGGAAATCTTCACTCCACTGCTT 120
Query 1549 CACAGGATCGA-CAAGGGAGAAGTGAAATCGGTCCCATACAAACAAGGTAGCCGTGGCCC 1607
|||| ||| || |||||||||||||||||| |||||||||||||| | |||| ||||||
Sbjct 121 CACATGAT-GAACAAGGGAGAAGTGAAATCTATCCCATACAAACAAAGAAGCCCTGGCCC 179
Query 1608 AGCGGAAGCAGATCAGCTACTTAAGAAAGCTGGTTATATGCAGACTCATGGCTACATTTG 1667
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 180 AGCCGAAGCAGATCAACTACTTAAGAAAGCTGGTTATATGCAGGCTCATGGCTGCATT-G 238
Query 1668 GATCCCTCCTACATTGTAAATGGTATAAT-CATAG 1701
||| |||||||||||||||||||||||| |||||
Sbjct 239 GATACCTCCTACATTGTAAATGGTATAAAACATAG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73476082605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5