BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27310.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936467 jgi|Araly1|936467|scaffold_500658.1 1260 0.0
> Ahg936467 jgi|Araly1|936467|scaffold_500658.1
Length=796
Score = 1260 bits (682), Expect = 0.0
Identities = 751/785 (96%), Gaps = 2/785 (0%)
Strand=Plus/Plus
Query 17 CGGGTCTGATGTTTGTTGATGACCCTTCTCTACACACCTTGAAACGCAGACGACTCGAGA 76
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 13 CGGGTCTGATGTTTGTTGATGACCCTTCTCTTCACACCTTGAAACGGAGACGACTCGAGA 72
Query 77 TCACCGATTCCATGGAAGCTTCTTCTTCAGCTCAGGCTAAAATTGCTGATATGCGAGAGA 136
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TCATCGATTCCATGGAAGCTTCTTCTTCAGCTCAGGCTAAAATTGCTGATATGCGAGAGA 132
Query 137 AATTAGGGCGAGAGGTTCGTGTTTTCGAGACTTCGAGTATCTCACAGAGACCAAGTCAAG 196
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 133 AATTAGGGCGAGAGGTTCGTGTTTTCGAGACTTCGAGTAACTCTCAGAGGCCAAGTCAAG 192
Query 197 TTTCTAGTGCTGACGATGAATCTGATGATTTCTACGAGTTCACACCTGCAGATTTTTACC 256
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 193 TTTCTAGTGCTGAAGATGAATCTGATGATTTCTACGAGTTCACACCTGCAGATTATTACC 252
Query 257 GCCTTTTGGCTACTAAGAAAGAAGATAAATCGTTGAAGACAAGAAAAATCCGGGAAGCAG 316
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 253 GCCTTTTAGCTACTAAGAAAGAAGATAAATCGTTGAAGACAAGAAAACTCCGGGAAGCAG 312
Query 317 AAGAAGCTGCTCGTCGATCAAAGCTCACTAAGGCTGTAATCCGGGTTCGTTTTCCTGATA 376
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 313 AAGAAGCTGCTCGTCGATCAAAGCTGACTAAGGCTGTAATCCGGGTTCGTTTTCCTGATA 372
Query 377 ATCACACATTGGAGGCAACATTTCATCCATCAGAAAAGATCCAAGGCTTGATTGATCTTG 436
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 373 ATCACACATTGGAGGCAACATTTCATCCCTCAGAAAAGATCCAAGGCTTGATTGATCTTG 432
Query 437 TCAAAAGAGTAGTTGCCCACCCAGATGTTCCTTTCTACTTGTATACAACTCCTCCCAAGA 496
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 433 TCAGAAGAGTAGTTGCCCACCCAGATGTTCCTTTCTACTTGTACACAACTCCTCCCAAGA 492
Query 497 AACAGATAAAAGATTTCTCACAAGACTTCTACTCAGCTGGGTTTGTTCCTGGAGCCATTG 556
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 493 AGCAGATAAAAGATTTCTCACAAGACTTCTACTCAGCTGGGTTTGTTCCTGGAGCAATTG 552
Query 557 TCTACTTTTCAAACGATCAACCTAAAGATGATGGTG-GTAGTTCAACTCCTTATCTTAAT 615
|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 553 TCTACTTTGCAAACGATCAACCTAAAGATGATGGTGCG-AGTTCAACTCCTTATCTTAAT 611
Query 616 GAAGAGATTTTGTCACTGAAAGATTTAGAGGCCATGACCAAAGCCGTGGAACCGGTTGAA 675
|||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 612 GAAGAGATCTTGTCACTGAAAGATTTAGAGGTCATGACCAAAGCGGAGGAACCGGTTGAT 671
Query 676 TCGTCATCAGAGCCAGCCACGGTTGACTCTAGTGCTGTACCTGTTGAACACGAGCGTAAA 735
||||| |||||||||||||| ||||||||| || ||||||||||||||||||||| ||||
Sbjct 672 TCGTCTTCAGAGCCAGCCACTGTTGACTCTGGTTCTGTACCTGTTGAACACGAGCCTAAA 731
Query 736 TCCACAGAGAAGAAGACCACAAAGCCTAAGTGGTTTAAAATGTGATTTCACTTTGTTTCT 795
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 732 ACCACAGAGAAGAAGACCACAAAGCCTAAGTGGTTTAAAATGTGATTTCACTGCGTTACC 791
Query 796 CACAT 800
|||||
Sbjct 792 CACAT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5