BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27380.1 Length=2424 Score E Sequences producing significant alignments: (Bits) Value Ahg936489 jgi|Araly1|936489|scaffold_500680.1 1428 0.0 Ahg493917 jgi|Araly1|493917|fgenesh2_kg.7__3350__AT5G40650.1 977 0.0 Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 470 3e-131 Ahg322865 jgi|Araly1|322865|fgenesh1_pm.C_scaffold_5000409 361 2e-98 Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1 348 1e-94 Ahg924337 jgi|Araly1|924337|scaffold_105618.1 233 4e-60 > Ahg936489 jgi|Araly1|936489|scaffold_500680.1 Length=881 Score = 1428 bits (773), Expect = 0.0 Identities = 846/881 (96%), Gaps = 6/881 (1%) Strand=Plus/Plus Query 69 GATTTCTCCGAG-G-aaaaaaaTGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 126 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTTCTCCGAGAGAAAAAAAATGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 60 Query 127 CCGTCGAAATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCG 186 |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| Sbjct 61 CCGTCGAAATTAGCCACGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCG 120 Query 187 GAGGCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 246 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAGGCGGAAACAAAAGCTTCGTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 180 Query 247 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAA-ATTACCAGATCGA 305 |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| Sbjct 181 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTT-AAAGATTACCAGGTCGA 239 Query 306 TCTCAAAGATTGTGGTCCAATGGTATTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 365 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 TCTCAAGGATTGTGGTCCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 299 Query 366 TCCATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 425 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 TCCATCGCTTACCTTCCGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 359 Query 426 CATTGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCATCGGAGAC 485 ||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| ||| Sbjct 360 CATTGATGGATGTAATGGACTTGCTTGTTTAACGAAGATTCAAGATGGAGCATCGGGGAC 419 Query 486 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGAT-TTGGTTGTTGATATGACTA 544 |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 420 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATCTT-GTGGTTGATATGACTA 478 Query 545 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTG 604 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 479 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTG 538 Query 605 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 598 Query 665 AATGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 724 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGTGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 658 Query 725 CTTACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATG 784 |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| Sbjct 659 CTTACCTTGGTCCAGCTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATG 718 Query 785 AGTACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATA 844 |||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| Sbjct 719 AGTACACTAAGGAAAGACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATA 778 Query 845 CAATCTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTC 904 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 779 CAATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCAC 838 Query 905 ACATCAAGCAACTTCAGCGTTGAAACAGCTAAGTTTGTGTG 945 |||||||||||||||| |||||||||||||||||||||||| Sbjct 839 ACATCAAGCAACTTCAACGTTGAAACAGCTAAGTTTGTGTG 879 > Ahg493917 jgi|Araly1|493917|fgenesh2_kg.7__3350__AT5G40650.1 Length=1029 Score = 977 bits (529), Expect = 0.0 Identities = 749/855 (88%), Gaps = 16/855 (2%) Strand=Plus/Plus Query 72 TTCTCCGAGGaaaaaaaTGGCGTCTGGTTTGATCGGAAGA-TTGGTTGGAACGAAACCGT 130 |||||||| | ||||||| ||| |||||||||||||||| || |||||||| ||| ||| Sbjct 36 TTCTCCGA-G--AAAAATGACGTTTGGTTTGATCGGAAGAGTT-GTTGGAACCAAATCGT 91 Query 131 CGA-AATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCGGAG 189 | | ||| ||||||||||| | || ||||||||| ||||||| || |||||| | || Sbjct 92 C-ACGGTTATCCACGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAA 150 Query 190 GCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAGATC 249 || || | |||||||| | |||||| | ||||| ||| |||||||| ||||||||| Sbjct 151 GCACAATCGAAAGCTTCAACCGGCGGC-G--GAGGAGCGAGTTTGAAGACGTTTCAGATC 207 Query 250 TATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAAATTACCAGATCGATCTC 309 ||||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||||| Sbjct 208 TATCGATGGAATCCAGATAATCCTGGAAAGCCTGAGCTTCAAGATTACCAAATCGATCTC 267 Query 310 AAAGATTGTGGTCCAATGGTAT-TAGATGCTTTGATTAAGATCAAAAACGAAATGGATCC 368 || ||||||||||||||||| | ||||||||||||||||||| || ||||| |||||||| Sbjct 268 AAGGATTGTGGTCCAATGGT-TCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCC 326 Query 369 ATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACAT 428 |||||| ||||||||| | || ||||||||||| || |||||||| |||||||||||||| Sbjct 327 ATCTCTCACTTTCCGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACAT 386 Query 429 TGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCAT-CGGAGACGA 487 |||||||||||| || ||||||||||| || |||||| || || | | | ||||||| Sbjct 387 TGATGGATGTAATGGTCTTGCTTGTTTAACGAAGATTGAATCTGGATC-TAAAGAGACGA 445 Query 488 CGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTTGATATGACTAATT 547 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 446 CGATTACGCCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTGGATATGACGAATT 505 Query 548 TTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTC 607 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 506 TTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTC 565 Query 608 CTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAAT 667 ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 566 CTGGGAAAGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGAATGTATGAAT 625 Query 668 GTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTT 727 ||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||| Sbjct 626 GTATTCTCTGTGCTTGTTGTAGCACGTCTTGTCCTAGCTATTGGTGGAACCCTGAGTCTT 685 Query 728 ACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGT 787 | ||||| |||||||||||||| || || || |||||||||||||| || || ||||||| Sbjct 686 ATCTTGGCCCAGCTGCTTTGCTTCATGCCAACAGGTGGATAAGCGATAGCCGAGATGAGT 745 Query 788 ACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAA 847 ||||||||||||||||||| || |||||||| ||||||||||| || || ||||| |||| Sbjct 746 ACACTAAGGAAAGACTTGAAGCCATTGACGATGAGTTCAAGCTGTATCGATGCCACACAA 805 Query 848 T-CTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTCAC 906 | || ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct 806 TTCT-GAACTGTGCTCGTGCATGTCCAAAGGGATTGAACCCAGGGAAACAGATTACACAC 864 Query 907 ATCAAGCAACTTCAG 921 |||||||| |||||| Sbjct 865 ATCAAGCAGCTTCAG 879 > Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 Length=605 Score = 470 bits (254), Expect = 3e-131 Identities = 294/313 (94%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 2113 ACAGTCTCAACAATCAAAAGCTTCAAATTTTTCATT-GTCAAGAATTCTCAAAATGGCTA 2171 ||| |||||||||||||||| ||| ||||||||||| | |||||||||||||||||||| Sbjct 1 ACAATCTCAACAATCAAAAGTTTC-AATTTTTCATTCG-AAAGAATTCTCAAAATGGCTA 58 Query 2172 GAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCAACTGGCGA 2231 |||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||| Sbjct 59 GAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAACTCGCGA 118 Query 2232 CGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 2291 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 178 Query 2292 GTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGAGCTTTTGA 2351 |||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||| Sbjct 179 GTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAGCTTTTGA 238 Query 2352 TCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTTCAAGACGGATC 2411 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 239 TCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTCAAGACGGATC 298 Query 2412 TTAGGTTTCAGAG 2424 | ||||||||||| Sbjct 299 TGAGGTTTCAGAG 311 > Ahg322865 jgi|Araly1|322865|fgenesh1_pm.C_scaffold_5000409 Length=231 Score = 361 bits (195), Expect = 2e-98 Identities = 219/231 (95%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 1380 ATGACACCGGCAACACTAGCTATATTCTTTGTCTCTTTGGTTACTATTGGAACAGCAACC 1439 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1 ATGACACCGGCAACACTAGCTATATTCTTTGTCTCTTTGGTCATTATTGGAACAGCAACC 60 Query 1440 GATGTTGCTCCAGCAACTAAACAACAGTTTGAGTTCTTTCCGAGCTTGCGGGAGCATCAG 1499 ||||||||||||||||| ||||||| | |||||||||||||||| |||| ||||||| | Sbjct 61 GATGTTGCTCCAGCAACCAAACAACCGATTGAGTTCTTTCCGAGTTTGCAGGAGCATGAC 120 Query 1500 AAGTCTCTATTTGTTACTGTGGAAGGCTGCAACAACCATTGCCTAACAGCTTGCTGTGAC 1559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 121 AAGTCTCTATTTGTTACTGTGGAAGGCTGCAACAACCATTGCCTAACAGCTTGCTTTGAC 180 Query 1560 TGCAACATAGAAAAACAGCCTCCCGTTTGTGTTCAGTGTTGCCCGATTTGA 1610 ||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 181 TGCAACATAGAGAAACAGCCTCCCGTTTGCGTTCAGTGTTGCCCGATTTGA 231 > Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1 Length=523 Score = 348 bits (188), Expect = 1e-94 Identities = 239/264 (91%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 2162 AAAATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAG 2221 ||||||||| | || |||||||||||| | ||||||||||||||||| ||||| || ||| Sbjct 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60 Query 2222 CAACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 2281 ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120 Query 2282 CACAGATTCCGTCCAGGAACAGTAGCGTT-ACGTGAAATCAGAAAGTATCAAAAAAGCAC 2340 |||||||||||||||||||| || ||||| | | |||||||| ||||||||||| || || Sbjct 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGA-GAGAAATCAGGAAGTATCAAAAGAGTAC 179 Query 2341 AGAGCTTTTGATCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTT 2400 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 180 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 239 Query 2401 CAAGACGGATCTTAGGTTTCAGAG 2424 |||||||||||| ||||| ||||| Sbjct 240 CAAGACGGATCTGAGGTTCCAGAG 263 > Ahg924337 jgi|Araly1|924337|scaffold_105618.1 Length=451 Score = 233 bits (126), Expect = 4e-60 Identities = 209/250 (84%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 2164 AATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCA 2223 ||||||| | || ||||| |||||||| ||||| || ||||| ||||| || || ||||| Sbjct 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79 Query 2224 ACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACA 2283 | | || || |||||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139 Query 2284 CAGATTCCGTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGA 2343 ||||||| | || ||||| || || ||| | |||||||| |||||||| || ||||| || Sbjct 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199 Query 2344 GCTTTTGATCCGTAAGCTTCCTTTCCAGAGA-TTGGTTCGTGAGATAGCTCAAGATTTCA 2402 |||| |||||||||| |||||||||||||| ||| | | ||||| |||||||| |||| Sbjct 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTCA 258 Query 2403 AGACGGATCT 2412 |||| ||||| Sbjct 259 AGACTGATCT 268 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91340407510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5