BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27400.1 Length=1441 Score E Sequences producing significant alignments: (Bits) Value Ahg896646 jgi|Araly1|896646|Al_scaffold_0005_612 1845 0.0 > Ahg896646 jgi|Araly1|896646|Al_scaffold_0005_612 Length=1239 Score = 1845 bits (999), Expect = 0.0 Identities = 1165/1245 (94%), Gaps = 12/1245 (1%) Strand=Plus/Plus Query 1 ATGGTTTCGTATTCTAATAATCATTTTGCATACGCATTTCTACTTCTTCTAACAATCGGT 60 ||| |||||||||||| |||| |||||| || || ||||||||||||||| |||||||| Sbjct 1 ATGTTTTCGTATTCTAGTAATTGTTTTGCTTATGCTTTTCTACTTCTTCTATCAATCGGT 60 Query 61 AACAC-GCTTGCATTTTCTTCGAGT-TTGCCGGATCATGTTCAAGATCCAAATCTAGTCG 118 ||||| | ||||||| ||||||||| | | || |||||||||||||||||||||||||| Sbjct 61 AACACAG-TTGCATTGTCTTCGAGTACT-CTGGCTCATGTTCAAGATCCAAATCTAGTCG 118 Query 119 TTGACGACGTTAACAGAAGTGTATTCAATGCGTCAAGGAGGAGCTTGGCCTACCTATCTT 178 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTGAAGAAGTTAACAGAAGTGTATTCAATGCGTCAAGGAGGAGCTTGGCCTACCTATCTT 178 Query 179 GTAGAACCGGAAATCCTATTGACGATTGTTGGCGGTGTGACCCTAATTGGGAAACAAACC 238 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 179 GCAGAACCGGAAATCCTATTGACGATTGTTGGCGGTGTGACCCGAATTGGGAAACAAACC 238 Query 239 GCCAACGGTTAGCAGATTGTGCCATTGGATTTGGCAAAAATGCTATCGGAGGGCGCAAAG 298 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || | | Sbjct 239 GCCAACGTTTAGCAGATTGTGCCATTGGGTTTGGCAAAAACGCTATCGGAGGCCGTGATG 298 Query 299 GTCGAATCTATGTAGTTACGGATCCTGCCAACGACGATCCCGTAAACCCTAGACCTGGGA 358 |||||||||||||||| || ||||| |||||||||||||| |||||||||||||| || | Sbjct 299 GTCGAATCTATGTAGTAACAGATCCGGCCAACGACGATCCAGTAAACCCTAGACCCGGAA 358 Query 359 CTCTAAGATATGCAGTGACACAAGAAGAACCATTATGGATCATTTTCAAGAGAGATATGG 418 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 CTCTAAGATATGCAGTCACACAAGAAGAACCATTATGGATCATTTTCAAGCGAGATATGG 418 Query 419 TCATTAGGCTCAAAAAAGAACTTATCATCACATCTTTCAAGACCATTGATGGTAGAGGCT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TCATTAGGCTCAAAAAAGAACTTATCATCACATCTTTCAAGACCATTGATGGTAGAGGCT 478 Query 479 CGAGTGTTCACATTACCGATGGACCATGCTTAAAGATCCACTATGCAAC-TAACATCATA 537 | ||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||| Sbjct 479 CAAGTGTTCACATAACCAATGGACCATGCTTAAAGATTCACTATGC-ACATAACATCATC 537 Query 538 ATTCATGGCATTAACATCCATGACTGTAAACCAGGATCAGGTGGCATGATTAAAGAT-GG 596 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 538 ATTCATGGTATTAACATCCATGACTGCAAACCAGGATCAGGTGGCATGATTAAAGATCAG 597 Query 597 TCCACATCACACCGGG-TGGTGGAT-GCAGTCCGATGGAGACGCGGTGGCGATATTTGGA 654 ||||||||||||||| | || || || |||||||||||||| ||||||||||||||| Sbjct 598 -CCACATCACACCGGGAT-GTATATCCCA-TCCGATGGAGACGCCGTGGCGATATTTGGA 654 Query 655 GGGAAACACGTGTGGATTGACCATTGCTCGTTGTCGAACTGCGATGATGGACTCATAGAC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GGGAAACACGTGTGGATTGACCATTGCTCGTTGTCGAACTGCGATGATGGACTCATAGAC 714 Query 715 GCTATACATGGTTCCACGGCTATAACCATATCGAACAATCATATGACGCACCATGATAAG 774 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 715 GCTATACATGGGTCAACGGCTATAACCATATCGAACAATCACATGACGCACCATGACAAG 774 Query 775 GTCATGCTTTTAGGACATAGCGATAGTTACACGCAGGACAAGAACATGCAAGTCACAATT 834 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 775 GTCATGCTTTTAGGGCATAGTGATAGTTACACGCAGGACAAGAACATGCAAGTCACAATT 834 Query 835 GCGTTTAACCATTTCGGAGAAGGACTCGTTCAAAGAATGCCACGGTGCAGGCATGGATAT 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 GCGTTTAACCATTTCGGAGAAGGACTCGTTCAAAGAATGCCACGGTGCAGGCATGGATAT 894 Query 895 TTCCATGTAGTGAACAATGATTATACTCACTGGGAAATGTATGCAATCGGTGGAAGTGCT 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 TTCCATGTAGTGAACAATGATTATACTCACTGGGAAATGTATGCAATCGGTGGAAGTGCT 954 Query 955 TCTCCAACTATATACAGCCAAGGGAATAGATTTCTTGCTCCTAACACCCGCTTTAATAAA 1014 |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 955 TCTCCAACGATATACAGCCAAGGCAATAGATTTCTTGCTCCCAACACCCGATTTAATAAA 1014 Query 1015 GAGGTTACAAAACATGAAGATGCACCCGAAAGCAAATGGAGAGATTGGAATTGGAGATCG 1074 |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 1015 GAGGTTACGAAACATGAAGATGCACCCGAAAGCCAATGGAGAGACTGGAATTGGAGATCG 1074 Query 1075 GAAGGCGATATGTTGTTGAACGGAGCTTATTTCCGCGAGTCCGGTGCTGAAGCTCCGTCT 1134 ||||| |||||||| ||||||||||| |||||||||||||||||||||| | |||| ||| Sbjct 1075 GAAGGGGATATGTTATTGAACGGAGCCTATTTCCGCGAGTCCGGTGCTGGATCTCCCTCT 1134 Query 1135 ACTTATGCAAGAGCTTCAAGCCTGAGTGCGAGGCCATCGTCACTTGTGGGTTCCATCACC 1194 ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| Sbjct 1135 ACTTATGCAAGAGCTTCGAGCCTGAGTGCAAGACCATCGTCTCTTGTGGGTTCCATCACG 1194 Query 1195 ACGACAGCAGGCACTTTGAGTTGTCGGCGAGGCCGTCGCTGTTAA 1239 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1195 ACGACAGCAGGCACTTTGAGTTGTCGACGAGGCCGTCGCTGTTAA 1239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53897696675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5