BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27690.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484556 jgi|Araly1|484556|fgenesh2_kg.5__548__AT3G27690.1 1282 0.0
Ahg936534 jgi|Araly1|936534|scaffold_500725.1 1240 0.0
Ahg930834 jgi|Araly1|930834|scaffold_303291.1 839 0.0
> Ahg484556 jgi|Araly1|484556|fgenesh2_kg.5__548__AT3G27690.1
Length=892
Score = 1282 bits (694), Expect = 0.0
Identities = 828/894 (93%), Gaps = 4/894 (0%)
Strand=Plus/Plus
Query 27 tttttttGTGTTCTTGTTTAGAAGAAGCAATGGCCACTTCAGCAATCCAACACTCTTCTT 86
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTTCTTTGTGTTCTTGTTTAGAAGAAGCAATGGCCACTTCAGCAATCCAATACTCTTCTT 60
Query 87 TCGCTGGCCAAACGA-CCCTAAAGCCATCCAACGATCTCCTCCGCAAAATCGGAGCCTCC 145
|| | |||||||| | |||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 TCACCGGCCAAAC-AGCCCTAAAGCCATCCAACGATCTCCTCCGTAAGGTCGGAGCCTCC 119
Query 146 AATGGCGGTGGCCGCATCATCATGCGTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGG 205
||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATGGTGGCGGCCGCGTCGTCATGCGTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGG 179
Query 206 TACGGACCAGACCGTCCCAAATACCTAGGACCATTTTCCGAAAACACACCATCATACCTA 265
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 180 TACGGACCAGACCGTCCCAAATACCTAGGACCATTCTCGGAAAACACACCATCATACCTA 239
Query 266 ACCGGAGAATACCCTGGAGACTACGGTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAA 325
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 240 ACCGGAGAATACCCTGGAGACTACGGCTGGGACACGGCCGGTCTCTCAGCCGATCCAGAA 299
Query 326 ACATTCGCAAAGAATCGTGAGCTCGAAGTGATCCACAGTAGATGGGCAATGTTGGGAGCT 385
|||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 300 ACATTCGCTAAGAACCGTGAGCTCGAGGTAATCCACAGTAGATGGGCAATGTTGGGCGCT 359
Query 386 TTAGGCTGCACCTTCCCTGAAATTCTCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTG 445
||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 360 TTAGGCTGCACCTTCCCAGAGATTCTCTCCAAGAACGGAGTCAAATTCGGTGAAGCCGTG 419
Query 446 TGGTTCAAGGCAGGATCTCAAATCTTCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCT 505
|||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct 420 TGGTTCAAGGCAGGATCTCAGATCTTCTCAGAAGGAGGACTTGATTACCTAGGAAACCCT 479
Query 506 AACTTGATCCACGCGCAAAGCATATTAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGA 565
||||||||||||||||||||||| ||||| || ||||| | |||||||||||| |||||
Sbjct 480 AACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTTCTCAAGTTGTGCTCATGGGC 539
Query 566 TTCATTGAAGGGTACAGAATCGGAGGTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTAC 625
||||||||||| ||||||||||||||||| || || || ||||||||||| |||||||||
Sbjct 540 TTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGGCTTGATCCGCTTTAC 599
Query 626 CCGGGCGGGGCCTTCGACCCGTTGAACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTG 685
|| |||||||| || ||||||||||||||||| || ||||||||||| || || || |||
Sbjct 600 CCAGGCGGGGCGTTTGACCCGTTGAACTTAGCAGAAGATCCAGAAGCATTCTCGGAATTG 659
Query 686 AAAGTGAAGGAGCTTAAAAACGGTCGTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTC 745
|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 AAGGTGAAGGAGCTCAAAAACGGTCGTCTTGCGATGTTCTCAATGTTTGGATTCTTTGTT 719
Query 746 CAAGCCATAGTTACCGGTAAAGGTCCGATCGAAAATCTGTTCGATCACATTGCAGACCCT 805
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 720 CAAGCCATTGTTACCGGTAAAGGTCCGATAGAGAATCTGTTCGATCACATTGCAGACCCT 779
Query 806 GTGGCTAACAATGCTTGGGCTTACGCCACCAACTTCGTCCCCGGAAAATAGAGTTTGATC 865
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 GTGGCTAACAACGCTTGGGCTTACGCCACCAACTTTGTCCCCGGAAAATAGAGTTTGATC 839
Query 866 GGATAATTTATGTAAATTATATCTTTTAA-ACATTTATCAATGCATTAAAGTTA 918
||||||||||||||||||||||||||||| | |||| |||||||| ||||||||
Sbjct 840 GGATAATTTATGTAAATTATATCTTTTAAGA-ATTTGTCAATGCACTAAAGTTA 892
> Ahg936534 jgi|Araly1|936534|scaffold_500725.1
Length=846
Score = 1240 bits (671), Expect = 0.0
Identities = 778/831 (94%), Gaps = 1/831 (0%)
Strand=Plus/Plus
Query 51 AAGCAATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGC 110
||| |||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 17 AAG-AATGGCAACTTCAGCAATCCAACACTCCTCTTTCGCCGGCCAAACGACCCTGAAGC 75
Query 111 CATCCAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGC 170
|||||||||||||| | || || |||||||||||||||| || |||||| || ||||||
Sbjct 76 CATCCAACGATCTCATTCGTAAGGTCGGAGCCTCCAATGGTGGCGGCCGCGTCGTCATGC 135
Query 171 GTCGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACC 230
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GACGTACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACC 195
Query 231 TAGGACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACG 290
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TAGGACCATTCTCGGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACG 255
Query 291 GTTGGGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCG 350
| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 256 GCTGGGACACCGCCGGTCTCTCAGCTGATCCAGAAACATTCGCAAAGAACCGTGAGCTCG 315
Query 351 AAGTGATCCACAGTAGATGGGCAATGTTGGGAGCTTTAGGCTGCACCTTCCCTGAAATTC 410
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 316 AAGTAATCCACAGTAGATGGGCAATGTTGGGCGCTTTAGGCTGCACCTTCCCAGAAATTC 375
Query 411 TCTCAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCT 470
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 376 TCTCCAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCACAGATCT 435
Query 471 TCTCAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATAT 530
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TCTCAGAAGGAGGACTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATAT 495
Query 531 TAGCTATATGGGCGTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAG 590
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAG 555
Query 591 GTGGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGA 650
|||| |||||||| ||||| |||||||| |||||||| ||||| || || ||||||||||
Sbjct 556 GTGGGCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGCGGAGCGTTTGACCCGTTGA 615
Query 651 ACTTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTC 710
|||||||||||||||||||||| || || || ||||| ||||||||||| ||||||||||
Sbjct 616 ACTTAGCGGAGGATCCAGAAGCATTCTCGGAATTGAAGGTGAAGGAGCTCAAAAACGGTC 675
Query 711 GTCTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTC 770
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 676 GTCTTGCGATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGTAAAGGTC 735
Query 771 CGATCGAAAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAATGCTTGGGCTTACG 830
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 736 CGATAGAGAATCTGTTCGATCACATTGCAGACCCTGTGGCTAACAACGCTTGGGCTTACG 795
Query 831 CCACCAACTTCGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAA 881
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CCACCAACTTTGTCCCCGGAAAATAGAGTTTGATCGGATAATTTATGTAAA 846
> Ahg930834 jgi|Araly1|930834|scaffold_303291.1
Length=859
Score = 839 bits (454), Expect = 0.0
Identities = 688/802 (86%), Gaps = 11/802 (1%)
Strand=Plus/Plus
Query 55 AATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATC 114
|||||| || ||||| ||||| || || || ||||| ||||||||| |||| ||||| ||
Sbjct 34 AATGGCTACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTC 93
Query 115 CAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCG 174
|||||| ||||||||||| | || | ||| || |||||||| | | |||||||||
Sbjct 94 CAACGACCTCCTCCGCAAGGTTGGTGTTTCC---GGTGGTGGCCGTGTGACCATGCGTCG 150
Query 175 TACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGG 234
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||
Sbjct 151 TACCGTCAAGTCTACTCCTCAAAGCATCTGGTATGGACCAGACCGTCCCAAATACTTGGG 210
Query 235 ACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTG 294
|||||| || || ||||||||||| ||| |||||||||||||||| ||||||||||| ||
Sbjct 211 ACCATTCTCGGAGAACACACCATCGTACTTAACCGGAGAATACCCCGGAGACTACGGCTG 270
Query 295 GGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGT 354
|||||||||||| |||||||| || || || |||||||| ||||| |||||||| || ||
Sbjct 271 GGACACCGCTGGACTCTCAGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAGGT 330
Query 355 GATCCACAGTAGATGGGCAATGTTGGGAGCT-TTAGGCTGCACCTTCCCTGAAATTCTCT 413
|||||||| |||||||| |||||||| ||| || |||||||| |||||||| |||||||
Sbjct 331 AATCCACAGCAGATGGGCTATGTTGGGTGCTCTT-GGCTGCACATTCCCTGAGATTCTCT 389
Query 414 CAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCT 473
| || ||||| || |||||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 390 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCGGGTTCTCAGATCTTCT 449
Query 474 CAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 533
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 450 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 509
Query 534 CTATATGGGCGTG-TCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 592
| || ||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 510 CCATCTGGGC-TACTCAAGTTGTGCTCATGGGCTTCATTGAAGGCTACAGAATCGGAGGT 568
Query 593 GGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAAC 652
|| || || || |||||||||||||| |||||||| || || || |||||||| ||||||
Sbjct 569 GGACCACTCGGAGAAGGGCTTGACCCACTTTACCCCGGAGGTGCGTTCGACCCTTTGAAC 628
Query 653 TTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGT 712
|| || ||||||||||| || || || ||| |||| ||||||||||| || |||||||||
Sbjct 629 TTGGCAGAGGATCCAGAGGCCTTCTCTGAGCTGAAGGTGAAGGAGCTCAAGAACGGTCGT 688
Query 713 CTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCG 772
||||| |||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 689 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTCACTGGTAAAGGTCCC 748
Query 773 ATCGAAAATCT-GTTCGATCACATTG-CAGACCCTGTGGCTAACAATGCTTGGGCTTACG 830
|| || || || ||| |||||| ||| | || |||||||||||||| || |||||||| |
Sbjct 749 ATTGAGAA-CTTGTTTGATCAC-TTGGCTGATCCTGTGGCTAACAACGCCTGGGCTTATG 806
Query 831 CCACCAACTTCGTCCCCGGAAA 852
| || ||||| |||||||||||
Sbjct 807 CTACTAACTTTGTCCCCGGAAA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5