BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27750.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936543 jgi|Araly1|936543|scaffold_500734.1 1000 0.0
> Ahg936543 jgi|Araly1|936543|scaffold_500734.1
Length=704
Score = 1000 bits (541), Expect = 0.0
Identities = 642/690 (93%), Gaps = 10/690 (1%)
Strand=Plus/Plus
Query 11 TAATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCCATAGCCATACCCTTA 70
||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 20 TAATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCC-T-----TAACCTTA 73
Query 71 GCGTCATCGTTCCTAAGAGAACGTTCGTTTCGATCCGATGCGGTCCACGAGACAACCGCG 130
||||| ||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||
Sbjct 74 GCGTCGTCGTTCCTAAGAGAAGGTTAGTTTCAATCCGATGCGGTCCACGCGACAACCGCG 133
Query 131 GACCACTTCTCAAAGGCCGAATCCTAAGCACCGAAGCAATCCAATCAATCCAATCTCTCA 190
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 134 GACCACTTCTCAAAGGTCGAATCCTAAGCACCGAAGCAATCCAATCGATCCAATCTCTCA 193
Query 191 AACGAGCTCATCGAACCGGT-GTCTCCCTCTCCCTTACCCTCCGTCCTCTCCGCCGTCTC 249
||||||| |||||||||||| | ||| |||| |||||||||||||||||||||||||||
Sbjct 194 AACGAGCACATCGAACCGGTAG-CTCAATCTCTCTTACCCTCCGTCCTCTCCGCCGTCTC 252
Query 250 ATAAAATCCGATCTCATCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTATTGCACACTC 309
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 253 ATAAAATCCGATCTCGTCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTACTGCACACTC 312
Query 310 GCTGTCCATGTACTCTCCACTCTCCGTACAGAGTATCCTCCTCTTGACCTTGTTCTATAC 369
||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 313 GCTGTCCATGTTCTCTCCACTCTTCGTTCAGAGTATCCTCCTCTCGACCTTGTTCTATAC 372
Query 370 GCAGACATTGTTAATGCTCTTACGAGGAATAAAGAGTTCGATGAGATAGATCGTCTTATT 429
|| || || |||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 373 GCCGATATCGTTAATGCTCTTTCTAGGAACAAAGAGTTCGATGAGATAGATCGTCTTATT 432
Query 430 GGTGAAATTGATGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGG 489
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GGAGAAATTGAAGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGA 492
Query 490 GCTGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGGGAA 549
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 493 GCGGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGAGAA 552
Query 550 AGTGGTTGGGGGTCTGAGTCATGGGAGGCTGATGAGTATGTCGCTGAGGTTTTGAGTAAG 609
||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||| |||
Sbjct 553 AGTGGGTGGGGGTCTGAGTCGTGGGAGGCTGATGAGTATGTGGCTGAGGTTCTGAGCAAG 612
Query 610 GGTCTCTTGAGACTAGGAGAGCCAGACTTGGCTTCTCAAGTCTCACTCAAATCTTCAATT 669
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 613 GGTCTCTTGAGACTAGGAGAGCAAGACTTGGCTGCTCAGGTCTCACTCAAATCTTCAATT 672
Query 670 CTAAAACCTTGAAtttt-cgggtttt-cgg 697
||||| ||||||||||| |||||||| |||
Sbjct 673 CTAAACCCTTGAATTTTTCGGGTTTTTCGG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5