BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27830.1 Length=928 Score E Sequences producing significant alignments: (Bits) Value Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1 1070 0.0 Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1 798 0.0 Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160 326 2e-88 > Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1 Length=763 Score = 1070 bits (579), Expect = 0.0 Identities = 722/787 (92%), Gaps = 26/787 (3%) Strand=Plus/Plus Query 71 aaTGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCATCTTATCCTACTCT 130 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCTACTCT 60 Query 131 CGCTTCCATCAATCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 190 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGCTTCCACCAACCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 120 Query 191 TGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 250 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 180 Query 251 CGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCATCCCTAACCCTCGAAGA 310 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 181 CGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTTACCCTCGAAGA 240 Query 311 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCTTTAGC 370 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGC 300 Query 371 CCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGA 430 || || || ||||| || |||||||||||||||||||| |||||||||||||| || || Sbjct 301 TCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTTGAAGA 360 Query 431 GCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAAT 490 || || || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 361 ACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGAT 420 Query 491 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGG 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 421 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGG 480 Query 551 ATTACCAaagaagtttaaagaaggtatcactaaagatgaagctgaagaagctaagaagac 610 ||| || |||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 481 ATTGCCCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTGAAGAAGCTAAGAAGAC 540 Query 611 tcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTTATaaaaaaaaaaaaaG 670 ||||||||||||||||||||||||||||||||||||||||||| |||| |||| | Sbjct 541 TCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTT-ATAATAAAA------G 593 Query 671 AAGTTGTTATCTTTTCTGGAATTTGATTGG--TCTTTTGTGTTGTTTAGTATAGTTTGCG 728 || || |||||||||||| || | || |||||||||||||||||||||||||||| Sbjct 594 ---TTCTTCTCTTTTCTGGAAATT--TCGGGATCTTTTGTGTTGTTTAGTATAGTTTGCG 648 Query 729 TCTGGAATTGTTGAGAAATTGTTGTAATTTGAATCACATTTGGTTTCCCATTAGCTGATT 788 ||||||||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 649 TCTGGAATTGTTG-----T------AATTTGAATCACATTTGGTTTCCCATAAGCTGATT 697 Query 789 TCGCCATTGATGTGAGCTTTTTGGTAGCTGCACATAACATGTTTGTTGAAATGCCTAAAT 848 | |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 698 TTGCCATTGACATGAGCTTTT-GGTAGATGCACATAACATGTTTGTTGAAATGCCTAAAT 756 Query 849 GAGGCAA 855 ||| ||| Sbjct 757 GAGACAA 763 > Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1 Length=833 Score = 798 bits (432), Expect = 0.0 Identities = 692/809 (86%), Gaps = 52/809 (6%) Strand=Plus/Plus Query 58 agagtgaaacaaaaaTGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCAT 117 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 46 AGAGTGAAACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTT 105 Query 118 CTTATCCT-AC-TCTCGCTTCCATCAATCACTTCCCTTCCCGAA-CCACCACCATCGAAT 174 || | || || || |||| ||| | |||||||||||| || || ||||| | ||||||| Sbjct 106 CTCCT-CTCACTTC-CGCTACCACCCATCACTTCCCTT-CCAAACCCACCGCAATCGAAT 162 Query 175 TCCCCTCTCGCTTCGGTGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCC 234 |||| | ||| || | ||||| | | | | | ||||||||||| | | |||| Sbjct 163 TCCCATTTCG--TC--T--CGGTTC-T--T---C--T-AGCCACCGTGCAATCAACCTCC 207 Query 235 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCAT 294 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 208 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCAT 267 Query 295 CCCTAACCCTCGAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCT 354 |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 268 CCCTTACCCTCGAAGAGGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCT 327 Query 355 CCCCACTCTCTTTAGCCCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGG 414 ||||||||||||||||||| || |||||||| ||||| ||||| || ||||||||||||| Sbjct 328 CCCCACTCTCTTTAGCCCCTGCTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGG 387 Query 415 CGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 474 |||||||||||||||| || || || |||||||||||||||||||||||||||||||||| Sbjct 388 CGGCTGTAGTGGAGGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 447 Query 475 CTCGTATTGCAGTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 534 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 CTCGTATTGCAGTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 507 Query 535 AGGAGCTAATCGAAGGATTACCAaagaagtttaaagaaggtatcactaaagatgaagctg 594 |||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||| Sbjct 508 AGGAGCTAATTGAAGGATTACCCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTG 567 Query 595 aagaagctaagaagactcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTT 654 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 568 AAGAAGCTAAGAAGACCCTTGAAGAAGCTGGTGCTAAAGTTTCCATTGCTTAAG-TTTCT 626 Query 655 ATaaaaaaaaaa-aaaGAAGTTGTTATCTTTT-CTGGAATTTGATTGG-TCTTTT-GTGT 710 | || || | ||| || | || ||||||| | ||||||| || | |||||| |||| Sbjct 627 -TCAACAATCGATAAA-AA-T-GTGATCTTTTTC-GGAATTT-AT-GAATCTTTTTGTGT 679 Query 711 TGTTTAGTATAGTTTGCGTCTGGAATTGTTGA----G-----A-AATT-GTTGTAATTTG 759 |||||||||||||||| || ||| |||||||| | | |||| |||||| |||| Sbjct 680 TGTTTAGTATAGTTTGTGTTTGGTATTGTTGATTCAGCTTTGAGAATTTGTTGTACTTTG 739 Query 760 AATCACATTTGGTTTCCCATT-AGCTGATTTCGCCATTGATGTGAGCTTTTTGGT--AGC 816 ||||| |||||||||| ||| | | ||||| | | || | || || || || || Sbjct 740 AATCA-ATTTGGTTTCGTATTTA-CGGATTTTGTC-TTCAACA-AG-TTCTTCGTTTAGA 794 Query 817 TGCACATAACATGTTTGTTGAAATGCCTA 845 |||||||||| |||||||| ||||||||| Sbjct 795 TGCACATAACGTGTTTGTTAAAATGCCTA 823 > Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160 Length=258 Score = 326 bits (176), Expect = 2e-88 Identities = 223/244 (91%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 392 TGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGT 451 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 250 TGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACCGAATTCGATGTGGT 191 Query 452 TA-T------CAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAGCTGTTAGGG 504 || | |||||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 190 TACTGGTTATCAATGAAGTTCCAAGTAGTTCTCGTATTGCTGTGATTAAAGCTGTTAGGG 131 Query 505 CTTTGACTAGCTTGGCGTTGAAGGAAGCTAAG-GAGCTAATCGAAGGATTACCAaagaag 563 ||||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||||| Sbjct 130 CTTTGACTACCTTGGCGTTGAAGGAAGCTT-GTGAGCTAATTGAAGGATTACCCAAGAAG 72 Query 564 tttaaagaaggtatcactaaagatgaagctgaagaagctaagaagactcttgaagaagCT 623 |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 71 TTTAAAGAAGGTGTGACTAAAGATGAAGCTGAATAAGCTAAGAAGACTCTTGAAGAAGCT 12 Query 624 GGTG 627 |||| Sbjct 11 GGTG 8 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34424994051 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5