BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27850.1 Length=875 Score E Sequences producing significant alignments: (Bits) Value Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1 1170 0.0 Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1 691 0.0 Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160 324 8e-88 > Ahg484575 jgi|Araly1|484575|fgenesh2_kg.5__567__AT3G27850.1 Length=833 Score = 1170 bits (633), Expect = 0.0 Identities = 784/852 (92%), Gaps = 29/852 (3%) Strand=Plus/Plus Query 1 ACTCACAGAGACACACAAAACAAATCCCAAAGCTTCAGAGGAAGAAGAAGAAGAGAGTGA 60 |||||||||||||||||||||||||||||||| ||| || | ||||||||||||| Sbjct 1 ACTCACAGAGACACACAAAACAAATCCCAAAGATTC------AG-A-AAGAAGAGAGTGA 52 Query 61 GA-AACAATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 119 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 53 AACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 112 Query 120 CACTTCCGCTTCCACTCATCACTTCCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG 179 |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 113 CACTTCCGCTACCACCCATCACTTCCCTTCCAAACCCACCGCAATCGAATTCCCATTTCG 172 Query 180 TCTCAGCTCTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCTATCTCCGCCGTCGAAGC 239 |||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 173 TCTC-G--GTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCAATCGCCGCCGTCGAAGC 229 Query 240 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTCGAAGAAGCTC 298 |||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||| Sbjct 230 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTCGAAGAGGCTC 288 Query 299 GTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCCTTAGCCCCCG 358 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 289 GTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGCCCCTG 348 Query 359 CAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAA 418 | |||||||| ||||||||||| || ||||||||||||||||||||||||||||| || | Sbjct 349 CTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGGCGGCTGTAGTGGAGGAACAGA 408 Query 419 CAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAG 478 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 409 CCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGATTAAAG 468 Query 479 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGGATTAC 538 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 469 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGGATTAC 528 Query 539 CAaagaagtttaaagaaggtatcactaaagatgaagctgaagaagctaagaagactcttg 598 | |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| Sbjct 529 CCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTGAAGAAGCTAAGAAGACCCTTG 588 Query 599 aagaagCTGGTGCTAAAGTCTCCATTGCTTAAGTTTCTTCAACAATCGGaaaaaaaaaaa 658 ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| Sbjct 589 AAGAAGCTGGTGCTAAAGTTTCCATTGCTTAAGTTTCTTCAACAATCG-ATAAAAA---- 643 Query 659 TGTGATATTTT-CGGAATTTATGAGTCTTTTTGT-T-GTTTAGTATAGTTTGTGTTTGAG 715 |||||| |||| |||||||||||| ||||||||| | ||||||||||||||||||||| | Sbjct 644 TGTGATCTTTTTCGGAATTTATGAATCTTTTTGTGTTGTTTAGTATAGTTTGTGTTTG-G 702 Query 716 T-TA-TTGATTCAGCTTTTGAGAAATTGTTGTACTTTGAATCAATTTGGTTTCGTATT-A 772 | | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | Sbjct 703 TATTGTTGATTCAGCTTT-GAGAATTTGTTGTACTTTGAATCAATTTGGTTTCGTATTTA 761 Query 773 CAG-TTTTAGTCTTCAACAAGTTCTTCCTCTAGATGCACATAACCTGTTTGTTGAAATGC 831 | | |||| |||||||||||||||||| | |||||||||||||| |||||||| |||||| Sbjct 762 CGGATTTT-GTCTTCAACAAGTTCTTCGTTTAGATGCACATAACGTGTTTGTTAAAATGC 820 Query 832 CTAGCTCAAAAA 843 |||||||||||| Sbjct 821 CTAGCTCAAAAA 832 > Ahg484572 jgi|Araly1|484572|fgenesh2_kg.5__564__AT3G27830.1 Length=763 Score = 691 bits (374), Expect = 0.0 Identities = 520/587 (89%), Gaps = 23/587 (4%) Strand=Plus/Plus Query 66 AATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCT-CTCACTT 124 |||||||||||||||||||||||||||||| ||||||||||| || ||| | || || | Sbjct 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCT-AC-T 58 Query 125 C-CGCTTCCACTC-ATCACTT-CCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG-- 179 | ||||||||| | | ||||| |||| || || ||||| | ||||||||||| | ||| Sbjct 59 CTCGCTTCCAC-CAACCACTTCCCTTCCCGAA-CCACCACCATCGAATTCCCCTCTCGCT 116 Query 180 TC--T-CAGC-TCTTCTT---C--T-AGCCACCGTGCAATCAACCTCCGTCCTATCTCCG 229 || | || || |||| | | | ||||||||||| | | |||||||| ||| ||| Sbjct 117 TCGGTGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCG 176 Query 230 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTC 288 |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 177 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTC 235 Query 289 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCC 348 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 236 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCT 295 Query 349 TTAGCCCCCGCAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTG 408 ||||| || || || ||||| || || ||||||||||||||||| |||||||||||||| Sbjct 296 TTAGCTCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTT 355 Query 409 GAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 468 || || || || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GAAGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 415 Query 469 GTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATC 528 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATT 475 Query 529 GAAGGATTACCAaagaagtttaaagaaggtatcactaaagatgaagctgaagaagctaag 588 |||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 476 GAAGGATTGCCCAAGAAGTTTAAAGAAGGTGTGACTAAAGATGAAGCTGAAGAAGCTAAG 535 Query 589 aagactcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAG-TTT 634 ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 536 AAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTT 582 > Ahg899510 jgi|Araly1|899510|Al_scaffold_0004_160 Length=258 Score = 324 bits (175), Expect = 8e-88 Identities = 222/243 (91%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 376 GCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTT 435 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 249 GCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAACCGAATTCGATGTGGTT 190 Query 436 A-T------CAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAGCTGTTAGGGC 488 | | |||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct 189 ACTGGTTATCAATGAAGTTCCAAGTAGTTCTCGTATTGCTGTGATTAAAGCTGTTAGGGC 130 Query 489 TTTGACTAGCTTGGCGTTGAAGGAAGCTAAG-GAGCTAATCGAAGGATTACCAaagaagt 547 |||||||| ||||||||||||||||||| | |||||||| ||||||||||| ||||||| Sbjct 129 TTTGACTACCTTGGCGTTGAAGGAAGCTT-GTGAGCTAATTGAAGGATTACCCAAGAAGT 71 Query 548 ttaaagaaggtatcactaaagatgaagctgaagaagctaagaagactcttgaagaagCTG 607 ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 70 TTAAAGAAGGTGTGACTAAAGATGAAGCTGAATAAGCTAAGAAGACTCTTGAAGAAGCTG 11 Query 608 GTG 610 ||| Sbjct 10 GTG 8 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32404479450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5