BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27960.1
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484584 jgi|Araly1|484584|fgenesh2_kg.5__576__AT3G27960.1 3365 0.0
> Ahg484584 jgi|Araly1|484584|fgenesh2_kg.5__576__AT3G27960.1
Length=2355
Score = 3365 bits (1822), Expect = 0.0
Identities = 2201/2377 (93%), Gaps = 53/2377 (2%)
Strand=Plus/Plus
Query 16 AAAACATATAAGGACAGTGAAAGGGTTTGTGCATAAATG-TTGTTGCTTCATCTTTCTC- 73
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 AAAACATATAAGGACAGTGAAAGGGTTTGTTCATAAATGTTTGTTGCTTCATCTTTCTCA 60
Query 74 ---------ATA-ACATTAGCTATGAGATTATGAAAGTGAAGATATA-AAACAAACACCT 122
||| | |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 61 TTATAGAGAATATATATTAGCTATGAGATTATGAAAGTGAAGATATACAAACGAACACCT 120
Query 123 AAAAGTGAAAAGTACAAGACACCAAATCCTTCATTTTCATCTCTTACAC-AACCACACTA 181
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 121 AAAAGTGAAAAGTACAAGACACCAAATCCTTCATTTTTTTCTCTTACACAAACCACACTA 180
Query 182 AGTTACCAAAAAACAGAATCTGTTCt-ttttttGCCTTCTTGCAGATTTCTTCAGAGTCA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AGTTACCAAAAAACAGAATCTGTTCTGTTTTTTGCCTTCTTGCAGATTTCTTCAGAGTCA 240
Query 241 AAGACACATAAAGATTTATAA--TT-GAGTTGTGAGT-T-TTGGA-GGCCATGGACGTAG 294
||| | | ||| | || || || || || | | | | || | ||||||||||||||
Sbjct 241 GAGAGAGACAAACA--TA-AAGGTTCGA-TTTTTA-TCTCTT-AACGGCCATGGACGTAG 294
Query 295 GAGAGAGCAATGAGAGGGTAAAAGACGATTCTGCCCTTCAAGCTTCACCGAGGAGTCCTC 354
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 295 GAGAGAGCAATGAGAGGGGAAAAGACGATTCTGCCCTTCAAGCTTCTCCGAGGAGTCCTC 354
Query 355 TGAGTTCTATAGATCTTGCAATTGATGGAGCTATGAATGCTTCTATTGAGCAGTTGTATC 414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGAGCTCTATAGATCTTGCAATTGATGGAGCTATGAATGCTTCTATTGAGCAGTTGTATC 414
Query 415 ATAACGTTTGTGAAATGGAGAGTTCTGATGATCAGTCTCCGTCCAGGGCGAGTTTTATTT 474
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 415 ATAACGTTTGTGAAATGGAGAGTTCTGATGATCAGTCTCCGTCGAGGGCGAGTTTTATTT 474
Query 475 CGTATGGAGCTGAATCTAGGATTGATTTGGAGTTGAGGCATTTGGTTggagatgtaggag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 CGTATGGAGCTGAATCTAGGATTGATTTGGAGTTGAGGCATTTGGTTGGAGATGTGGGAG 534
Query 535 aagaaggagagagcaagaaagagattatcttggagaagaaggaagaaagtaatggagaag 594
|||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 535 GAGAAGGAGAGAGGAAGAAAGAGATTATCTTGGAGAAGAAGGAAGAGAGTATTGGAGGAG 594
Query 595 GTAGCTTGAGTCAGAAGAAACCTCTTTCGAA--TGGTAAGAAGGTTGCG-AA-AACGAG- 649
||||||||||||||||||||||| || ||| | | ||| || | || || | |
Sbjct 595 GTAGCTTGAGTCAGAAGAAACCT-GTT-GAATCTCTTTCGAA---TG-GTAAGAA-G-GT 646
Query 650 TCCTAATAATCCGAAGATGCCGGGTTCGAGGATCTCTTCGAGGAAATCACCGGATTTGGG 709
| | || || ||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 647 TGCGAA-AA--CGAAGATTCTTGGTTCGAGGATCTCTTCGAGGAAATCGCCGGATTTGGG 703
Query 710 GAAGGTTTCTGTTGATGAGGAGAGTCCTGAGCTTGGTGTGGTGTTGTTGAAGCAAGCCAG 769
|||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 704 GAAGGTTTATGTGGATGAGGAGAGTCCTGAGCTTGGGGTGTTGTTGTTGAAGCAAGCCAG 763
Query 770 AGAGTTGGTTTCTTCAGGTGAGAATTTAAACAAGGCTCTTGATTTAGCGTTGAGAGCGGT 829
||||||||||||||| ||||||||| | || |||||||||||||| ||||||||||||||
Sbjct 764 AGAGTTGGTTTCTTCTGGTGAGAATCTGAATAAGGCTCTTGATTTGGCGTTGAGAGCGGT 823
Query 830 GAAAGTGTTTGAGAAATGTGGGGAAGGAGAGAAACAACTTGGGTTGAATTTGGTGATGTC 889
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 824 GAAAGTGTTTGAGAAATGTGGGGAAGGAGAGAAACAATTTGGGTTGAATTTGGTGATGTC 883
Query 890 TTTGCATATCTTGGCAGCGATATATGCAGGGTTAGGGAGATACAATGACGCTGTGCCTGT 949
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 884 TTTGCATATCTTGGCAGCGATATATGCGGGGTTAGGGAGATACAATGATGCGGTGCCTGT 943
Query 950 TCTTGAACGTTCTATCGAGATACCGATGATTGAAGATGGTGAGGATCACGCGTTGGCGAA 1009
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 944 TCTTGAGCGTTCTATTGAGATACCGATGATTGAAGATGGGGAGGATCACGCGTTGGCGAA 1003
Query 1010 ATTTGCAGGGTGTATGCAGCTTGGTGACATGTATGGTTTGATGGGTCAAGTTGAAAATTC 1069
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1004 ATTTGCAGGGTGTATGCAGCTTGGTGACATGTATGGTTTGATGGGTCAGGTGGAAAATTC 1063
Query 1070 GATTATGCTATACACCGCGGGTTTGGAGATTCAAAGACAAGTTCTTGGAGAATCGGATGC 1129
|||| ||||||| || ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1064 GATTTTGCTATATACAGCGGGATTGGAGATCCAAAGACAAGTTCTTGGAGAATCGGATGC 1123
Query 1130 ACGAGTTGGCGAAACTTGTAGGTACTTAGCGGAAGCTCATGTTCAAGCAATGCAGTTTGA 1189
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1124 ACGAGTTGGAGAGACTTGTAGGTACTTAGCTGAAGCTCATGTTCAAGCAATGCAGTTTGA 1183
Query 1190 AGAAGCCTCAAGGCTTTGTCAAATGGCATTGGACATTCACAAAGAAAACGGTGCTGCCGC 1249
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1184 AGAAGCCTCGAGGCTTTGTCAAATGGCGTTGGACATTCACAAAGAAAACGGGGCTGCCAC 1243
Query 1250 TACAGCTTCTATTGAAGAAGCTGCGGATAGAAAACTGATGGGACTTATCTGCGATGCGAA 1309
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1244 TACGGCTTCGATTGAAGAAGCTGCGGATAGAAAACTCATGGGACTTATCTGCGATGCGAA 1303
Query 1310 AGGTGATTATGAAGTTGCGCTTGAGCATTATGTTTTAGCGAGCATGGCAATGTCATCTCA 1369
|| ||||| || |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1304 GGGAGATTACGAGGTTGCGCTGGAGCATTATGTTTTGGCAAGCATGGCAATGTCATCTCA 1363
Query 1370 GAACCATAGAGAAGATGTTG-CTGCTGTAGATTGCAGTATTGGTGATGCTTACATGTCGC 1428
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1364 GAACCAAAGAGAAGATGTTGCCT-CTGTAGATTGCAGTATTGGTGATGCTTACATGTCGC 1422
Query 1429 TAGCTAGGTTTGATGAAGCGATATTCGCATACCAGAAGGCTTTAGCTGTGTTTAAGCAAG 1488
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1423 TAGCTCGGTTTGATGAAGCGATATTCGCATATCAGAAGGCTTTGGCTGTGTTTAAGCAAG 1482
Query 1489 GAAAAGGTGAGACTCATTCCTCTGTTGCTTTGGTTTACGTTAGGCTTGCTGACTTGTACA 1548
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1483 CCAAAGGTGAGACTCATTCCTCTGTTGCTTTGGTTTACGTCAGGCTTGCTGACTTGTACA 1542
Query 1549 ACAAGATTGGGAAAACACGCGATTCCAAATCGTACTGCGAAAACGCTCTCAAGATTTACC 1608
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1543 ACAAGATTGGGAAATTACGCGATTCCAAATCGTACTGCGAAAACGCTCTTAAGATTTACC 1602
Query 1609 TAAAACCGACTCCAGGAACTCCTATGGAAGAGGTTGCGACTGGTTTTATAGAGATTTCTG 1668
||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1603 TAAAACCGAGTCCGGGAACTCCTATGGAAGAGGTTGCCACGGGTTTTATAGAGATTTCTG 1662
Query 1669 CGATATATCAGTCAATGAATGAACTTGATCAAGCTCTTAAGTTGTTG-AGACGGGCGTTG 1727
||||||||||||| ||||| |||||||||||| |||||||||||||| || |||||||||
Sbjct 1663 CGATATATCAGTCGATGAACGAACTTGATCAATCTCTTAAGTTGTTGAAG-CGGGCGTTG 1721
Query 1728 AAGATATATGCAAACGCTCCAGGTCAACAGAACACGATTGCAGGTATTGAAGCTCAAATG 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 AAGATATATGCAAACGCTCCAGGTCAACAGAACACGATTGCAGGTATTGAAGCTCAAATG 1781
Query 1788 GGTGTGGTTACTTATATGATGGGAAATTACTCCGAGTCCTACGACATATTCAAGAGCGCG 1847
|||||| || |||| |||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1782 GGTGTGATTTCTTACATGATGGGTAATTACCCCGAGTCCTACAACATATTCAAGAGCGCG 1841
Query 1848 ATATCAAAGTTCCGCAATAGCGGAGAGaaaaaaaCCGCTCTTTTCGGGATTGCTTTGAAT 1907
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 1842 ATATCAAAGTTCCGCAACAGCGGAGAGAAAAAAACAGCTCTTTTTGGGATTGCTCTGAAT 1901
Query 1908 CAGATGGGACTAGCTTGCGTTCAGCGTTACGCGATCAATGAAGCTGCAGATTTGTTTGAA 1967
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1902 CAGATGGGACTAGCTTGCGTTCAGCGTTATGCGATCAATGAAGCTGCAGATTTGTTCGAA 1961
Query 1968 GAAGCGAAAACTATTCTTGAGAAAGAGTGTGGACCGTACCATCCCGATACATTAGCGGTT 2027
||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1962 GAAGCAAAAACCATTCTCGAGAAAGAGTATGGACCGTACCATCCCGATACATTAGCAGTA 2021
Query 2028 TACAGTAACCTTGCTGGAACGTACGACGCAATGGGAAGGTTAGATGATGCTATAGAGATA 2087
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2022 TACAGTAACCTCGCCGGAACATACGACGCAATGGGAAGGTTAGATGATGCTATAGAGATA 2081
Query 2088 TTGGAGTATGTTGTTGGGACAAGAGAAGAGAAGCTCGGGACGGCAAATCCCGAGGTTGAG 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 TTGGAGTATGTTGTTGGGACAAGAGAAGAGAAGCTCGGGACGGCAAATCCCGAGGTTGAG 2141
Query 2148 GACGAGAAGCAGAGGCTTGCTGCGTTGTTGAAAGAAGCTGGAAGAGGAAGGAGTAAAAGA 2207
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2142 GACGAGAAACAGAGGCTTGCTGCGTTGTTAAAAGAAGCTGGAAGAGGAAGGAGTAAAAGA 2201
Query 2208 AACAGAGCACTTCTTACCCTTTTGGACAACAACCCTGAAATTGCAAATGGACAGAGACCG 2267
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2202 AACAGAGCACTTCTTACTCTTTTGGACAAAAACCCTGAAATTGCAAATGGACAGAGACCG 2261
Query 2268 GTTTATTGATTAACCGGATTATTGTCCGGTCTAAAATGTATATATATACAAAATAC-AAG 2326
|||||||||| |||||||||| ||||||| |||||||||||||||||| | |||| ||
Sbjct 2262 GTTTATTGATGAACCGGATTACGGTCCGGT-TAAAATGTATATATATACGATATACGAA- 2319
Query 2327 TTC-GAATACGGTACTT-ACACGGTCGAGGGAGAAGG 2361
||| | |||||||||| ||||||||||| |||||||
Sbjct 2320 TTCAGC-TACGGTACTTTACACGGTCGAGAGAGAAGG 2355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90769053835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5