BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28050.1 Length=1456 Score E Sequences producing significant alignments: (Bits) Value Ahg484590 jgi|Araly1|484590|fgenesh2_kg.5__582__AT3G28050.1 2122 0.0 Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 58.4 1e-07 > Ahg484590 jgi|Araly1|484590|fgenesh2_kg.5__582__AT3G28050.1 Length=1378 Score = 2122 bits (1149), Expect = 0.0 Identities = 1271/1329 (96%), Gaps = 12/1329 (1%) Strand=Plus/Plus Query 89 ctctgtttctctcatcttaaaattcatgtaaaaaaaatctacaaatcaaagagagaaaca 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 54 CTCTGTTTCTCTCATCTTAAAATTCATGTAAAAAAAATCTACAAATCAAAGAGA-AAACA 112 Query 149 gagtaaagagaaagagaagaagatggcgcggaaatactttcagagagaagTTTTGCCGGT 208 |||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 113 GAGTAAAGAG-AA-AGAAGAAGATGGCGCGAAAATACTTTCAGGGAGAAGTTTTGCCGGT 170 Query 209 AACGGCTTTGGTAATAATGGAATGTGCAAACGTTGGTTTAAACACTCTGTTTAAAGCAGC 268 |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 AACGGCGTTAGTGATAATGGAATGTGCAAACGTTGGTTTAAACACTCTGTTTAAAGCAGC 230 Query 269 AACTTTGAAAGGCATGAGCTTTCATGTCTTCATCGTTTACTCTTATGGTCTCGCTGCTCT 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 AACTTTGAAAGGCATGAGCTTTCATGTCTTCATCGTTTACTCTTATGGTCTCGCTGCTCT 290 Query 329 GCTTCTTCTTCCTTCTCTGTTTTGCTCTTTCAGATCAAGAACTCTTCCACCGATGAATTT 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 GCTTCTTCTTCCTTCTCTGTTTTGCTCTTTCAGATCAAGAACTCTTCCACCGATGAATTT 350 Query 389 CTCTATTCTCTACAAAATCGTGCTCTTAGGGATTATTGGATGCTGTTCAAACATAATGGG 448 ||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 351 CTCAATTCTCTACAAAATTGTGCTTTTAGGGATTATTGGATGCTGCTCAAACATAATGGG 410 Query 449 ATACACAGGGATAAATTATAGTTCTCCAACACTTGCTTCTGCAATCAGCAACCTCACTCC 508 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GTACACAGGGATAAATTATAGTTCTCCAACACTTGCTTCTGCAATCAGCAACCTCACTCC 470 Query 509 TGCTTTCACCTTCTTGCTTGCAGTCGTTTTCAGGATGGAGAGTGTGTCTTTTAAGAGAAC 568 |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 471 TGCTTTCACCTTCTTGCTCGCCGTCGTTTTCAGGATGGAGAGTGTGTCTTTCAAGAGAAC 530 Query 569 AAGTAGTGTGGCTAAAATGTTAGGAACCGTTGTTTCTATTGGAGGTGCATTTATAGTGAC 628 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 531 AAGTAGTGTAGCTAAAATGTTAGGAACCGTTGTTTCCATTGGAGGTGCATTTATAGTGAC 590 Query 629 TCTTTATAATGGTCCTGTTGTGATTGCTAAATCGCCACCGTCTGTTTCTTTGCGATCGCA 688 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 591 TCTTTATAATGGTCCTGTTGTGATTGCTACATCACCACCGTCTGTTTCTTTGCGATCGCA 650 Query 689 ATCGACTAACCCTAATTGGATACTTGGTGCGGGTTTCCTTGCGGTCGAGTATTTCTGTGT 748 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | Sbjct 651 ATCGACTAACCCTAATTGGATACTTGGTGCGGCTTTCCTTTCGGTCGAGTATTTCTGTCT 710 Query 749 TCCATTGTGGTACATTGTTCAGACTCAAATCATGAGAGAGTATCCGGCCGAGTTTACCGT 808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TCCATTGTGGTACATTGTTCAGACTCAAATCATGAGAGAGTATCCGGCCGAGTTTACCGT 770 Query 809 TGTTTGCTTTTATAGCATAGGCGTTAGCTTTTGGACCGCGCTAGTCACATTGTTCACTGA 868 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 771 TGTTTGCTTTTATAGCATAGGTGTTAGCTTTTGGACCGCGCTCGTCACATTGTTCACTGA 830 Query 869 AGGGAATGACTTGGGTGCATGGAAGATAAAACCGAATATAGCTTTAGTGTCGATCGTTTG 928 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 AGGGAGTGACTTGGGTGCATGGAAGATAAAACCGAATATAGCTTTAGTGTCGATCGTTTG 890 Query 929 CTCGGGATTGTTTGGATCTTGCATAAACAATACTATCCACACGTGGGCATTGCGGATCAA 988 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 891 CTCGGGATTCTTTGGATCTTGCATAAACAATACTATTCACACGTGGGCATTGCGGATCAA 950 Query 989 GGGGCCTTTATTTGTTGCAATGTTCAAGCCATTGTCTATTGCAATTGCTGTTGCAATGGG 1048 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 951 GGGGCCTTTATTTGTTGCAATGTTCAAGCCATTGTCGATTGCGATTGCCGTTGCAATGGG 1010 Query 1049 AGTTATCTTCCTGCGAGATTCTCTCTACATCGGCAGCTTGATCGGGGCAACGGTAATAAC 1108 ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1011 CGTTATCTTCCTTCGGGATTCTCTCTATATCGGCAGCTTGATCGGGGCAACGGTAATAAC 1070 Query 1109 AATCGGGTTTTACACGGTAATGTGGGGAAAAGCCAAGGAAGTGGCCTTGGTCGAAGATGA 1168 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1071 AATCGGGTTTTACACGGTGATGTGGGGCAAAGCCAAGGAAGTGGCCTTGGTCGAAGATGA 1130 Query 1169 TAACAAGGCTAACCACGAGGAGGCCAATGAAGCTGACCTTGATTCTCCATCGGGTTCACA 1228 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1131 CAACAAGGCTAACCACGAGGAGGCCAATGAAGCTGACCTTGATTCTCCATCAAGTTCACA 1190 Query 1229 GAAGGCTCCTCTCTTGGAAAGTTACAAGAACGATGAACATGTATGAGTATCATCAACTAG 1288 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1191 GAAGGCTCCTCTCTTGGAAACTTACAAGAACGATGAACATGTCTGAGTATCATCAACTAG 1250 Query 1289 TGAAGATCACGCTATATATATATGT------GTGAAAAAATT-CATATGTGAATTGTCTT 1341 ||||||||||||||||||||||| | ||| ||||| ||||||||||||||||| Sbjct 1251 TGAAGATCACGCTATATATATATATATATATGTGTGGAAATTTCATATGTGAATTGTCTT 1310 Query 1342 TGTAATTTATTTGATGAGACAAATGTGATCTTTAATTTTAGGA-TCCAAGTGTTTTCTAA 1400 |||||||||||||| ||||||||||||||||| |||||||||| || | ||||||||||| Sbjct 1311 TGTAATTTATTTGACGAGACAAATGTGATCTTCAATTTTAGGAATC-ATGTGTTTTCTAA 1369 Query 1401 TCACAATCT 1409 ||||||||| Sbjct 1370 TCACAATCT 1378 > Ahg493329 jgi|Araly1|493329|fgenesh2_kg.7__2762__AT4G15540.1 Length=1170 Score = 58.4 bits (31), Expect = 1e-07 Identities = 106/141 (75%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 1009 TGTTCAAGCCATTGTCTATTGCAATTGCTGTTGCAATGGGAGTTATCTTCCTGCGA-GAT 1067 |||||||||||||||||||||||||||| || || |||| | ||| ||||| || ||| Sbjct 841 TGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGCTATATTCCT-CGGCGAT 899 Query 1068 TCTCT-CTACATCGGCAGCT-TGATCGGGGCAACGGTAATAA-CAATCGGGTTTTACACG 1124 || || | || | || || | |||| || || | || | | | | ||||||||||| Sbjct 900 TCGCTTC-ACCTTGGGAG-TGTGATTGGATCAGTGATATTGAGCTTT-GGGTTTTACACT 956 Query 1125 GTAATGTGGGGAAAAGCCAAG 1145 || || ||||| ||||| ||| Sbjct 957 GTGATTTGGGGCAAAGC-AAG 976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54469050350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5