BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28220.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484604 jgi|Araly1|484604|fgenesh2_kg.5__596__AT3G28220.1 1827 0.0
> Ahg484604 jgi|Araly1|484604|fgenesh2_kg.5__596__AT3G28220.1
Length=1306
Score = 1827 bits (989), Expect = 0.0
Identities = 1180/1269 (93%), Gaps = 25/1269 (2%)
Strand=Plus/Plus
Query 5 ACTTAACCAAACATGTCTGAAAAGGGGTTGATaaaaaaaGAAGACCACATGTTTCAAGAG 64
|||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 3 ACTTAACCAAACATGTTTGAAAAGGGGTTGATAAAAAAAGAAGAAAACAAGTTTCAAGAG 62
Query 65 GAGAAGAGAAAGACAAACTATGGAGCAATTGGCTTGGCTTGCTTCATTT-CTTGTTTCTT 123
|||||||||||||||||||||||||||||| |||||| ||||||| ||| || ||| ||
Sbjct 63 GAGAAGAGAAAGACAAACTATGGAGCAATTTGCTTGGTTTGCTTCTTTTGTTTCTTT-TT 121
Query 124 TGCATTCCAATTCATGAAAATCGTaacaacacaaccttcaacaacaacaacaTCATCCAT 183
||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||
Sbjct 122 TGCATTCCAATTCATGAAACTTGTGACAACACAACCTT---TAACAACAACATCATCCAT 178
Query 184 TGCCGTTATCGATAGCCCAATGTCCTCCCATAAGCTATCTGATAGGAGAGAAATATGGAG 243
| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 179 TTCCGTTATCGATAGCCCAATGTCCTCCCATAAACTCTCTGATAGGAGAGAATTATGGAG 238
Query 244 AGTTA-TCCCACCATCTACCTATTGTCTCAAAATCGAATCTTTCATAAAATTCGCCACTT 302
||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 239 AGTTAGT-CCACCTTCTACCTATTGTCTCAAAATCGAATCTTTCAGAAAATTCGCCACTT 297
Query 303 CTCCAAACGCCGAGAAGTACGAATCCCGTCCTTTTGAATCCGGTGGATACAACTGGACAC 362
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 298 CTCCAAACGCCGAGAAGTACGAATCCCGTGCTTTTCAATCCGGTGGATACAACTGGACAC 357
Query 363 TTATTGTCTATCCTAAAGGAAACATTAAGGAAGGAGCTCCACTTAATTACGTTTCAATGT 422
||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 358 TTATTGTCTATCCTAAAGGAAACATTAAGGAAGGAGCTCCAGGTGATTGGGTTTCAATGT 417
Query 423 ACGTCCAAATAGACAATTCAACACTCCTTAACTCTCCAAAAGAAGTTTACGCAGAAGTCA 482
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGTCCAAATAGACAATTCAACACTCCTTAACTCTCCAAAAGAAGTTTACGCAGAAGTCA 477
Query 483 AATTCTTCATTTATAACCGGAAAGAGGACAAGTACTTAACATATCAAGAGACGGATGCAA 542
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 AATTCTTCATTTATAACCGGAAAGAGGACAAGTACTTCACATATCAAGAGACGGATGCAA 537
Query 543 AACGCTTTTTTCTGTTCAAACCATATTGGGGATATGGTAATGTTAGACCCTACACCGACG 602
| |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 538 AGCGCTTTTTTCTGTTCAAACCATATTGGGGATATGGTAACGTTAGATCCTACGGCGACG 597
Query 603 TGGCTAATCCCAATGCTGGTTGGCTTTTCGACGGTGACAATGTTTTATTCGGTGTGGACG 662
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 TGGCGAATCCCGATGCTGGTTGGCTTTTCGACGGTGACAATGTTTTATTCGGTGTCGACG 657
Query 663 TATTTGTCACTGAAGTTTTTAACAAATGGGAAGTGTTCTCATTCACTAAGAGTTTGCATG 722
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 658 TTTTTGTCACTGAAGTTTTTAACAAATGGGAAGTATTCTCCTTCACTAAGAGTTTGCATA 717
Query 723 ACCGCCTTTACAAATGGACGTTACCCAATTTCTCGTCACTAGAGAAACAGTACTATGTCT 782
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 718 ACCGCCTTTACAAATGGACGTTAACCAATTTCTCGTCACTAGAGAAACAATACTATGTAT 777
Query 783 CTGACAAGTTCGTGATCGGTGGGAGAAGCTGGGCTTTGAAAGTGTATCCAAGTGGCGATG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTGACAAGTTCGTGATCGGTGGGAGAAGCTGGGCTTTGAAAGTGTATCCAAGTGGCGATG 837
Query 843 GCGAAGGACAGGGTAACTCGTTGTCGTTATATGTTGTTGCGGTTGATGTTAAGCCGTATG 902
| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 838 GAGAAGGACAGGGTAACTCGCTGTCGCTATATGTTGTTGCGGTTGATGTTAAGCCGTACG 897
Query 903 ACAAGATTTACCTAAAAGCTAAGCTACGGATTATAAACCAGAGAGATTCTAAACACATGG 962
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 898 ACAAGATTTACCTAAAAGCTAAGCTACGAATTATAAACCAGAGAGATTCTAAACATGTGG 957
Query 963 AGAAGAAAGTTGAAAGCTGGTCGGATCAAGCAAACAGTTGGGGATTCCAGAAGTTTGTAC 1022
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGAAGAAAGTCGAAAGCTGGTCGGATCAAGCAAACAGTTGGGGATTCCAGAAGTTTGTAC 1017
Query 1023 CATTTGCTGATCTTAAGGATACTTCTAAAGGTCTTCTTGTGAATGATACATTGAAGATGG 1082
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 CATTTGCTGATCTTCAGGATACTTCTAAAGGTCTTCTTGTGAATGATACATTGAAGATAG 1077
Query 1083 AGATTGAATTTGAAGATTTCTCTAACACAAAATACTTTCCAAGTTAAGTTTTGCAT-A-- 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 AGATTGAATTTGAAGATTTCTCTAACACAAAATACTTTCCAAGTTAAGTTTTGCATTATG 1137
Query 1140 AT-GCAAAACCAGAGAGCTTGGAAC-CAATTGTGTTCTGT-TTTTTAAGTGTTTTTGTG- 1195
|| || ||||| | || | | | | ||| ||| | | ||||||||||||||||||
Sbjct 1138 ATTGCTCAACCA-A-AG-TCACA-CTCG-TTGCGTTTT-TCTTTTTAAGTGTTTTTGTGA 1191
Query 1196 CTAATAATTGGAGGATTGGTCTTCCTAAGGTTTAGGAGCCTAT----CTCCCACTTTTCC 1251
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1192 C-AATAATTGGAGGATTGGTCTTCCTAAGGTTTAGGAGCCTATATATCTCCCACTTTTCA 1250
Query 1252 CAATTCCCT 1260
|||||||
Sbjct 1251 TTATTCCCT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5