BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28710.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484645 jgi|Araly1|484645|fgenesh2_kg.5__637__AT3G28710.1 2065 0.0
Ahg484647 jgi|Araly1|484647|fgenesh2_kg.5__639__AT3G28715.1 1724 0.0
> Ahg484645 jgi|Araly1|484645|fgenesh2_kg.5__637__AT3G28710.1
Length=1398
Score = 2065 bits (1118), Expect = 0.0
Identities = 1327/1423 (93%), Gaps = 34/1423 (2%)
Strand=Plus/Plus
Query 14 AAACAAATCCAATCAATTCGAAGCTATCTTCTTCTTCGCGTTGATCTCTGTATCGATTTC 73
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAACAAATCCAATCAATTCGAAGCTATCTTCTTCTTCGCGTCGATCTCTGTATCGATTTC 60
Query 74 TTCTTCAGATCTC-CGGCGACAATCATTGAGATCTGAAT-ATCTTACGTTAAGGA-GAGA 130
||||||||||||| | |||||||| ||||||||||||| ||| |||| | |||| || |
Sbjct 61 TTCTTCAGATCTCTC-ACGACAATCTTTGAGATCTGAATAATCCTACGATCAGGAGGA-A 118
Query 131 AAGATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATATTTGGAGGCGATC 190
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 AATATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATC 178
Query 191 GTTAGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAATAATCTATGTCAGTGT 250
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 179 GTCAGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGT 238
Query 251 GAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGCTCTTATCTCCAA 310
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 239 GAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAA 298
Query 311 AACGAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACTCTTAAGCTTGTT 370
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 299 AACGAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTT 358
Query 371 GATGACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTAC 430
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 GATGACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTAC 418
Query 431 ATCAGATATGGCCACATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCATGAG 490
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 419 ATCAGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAG 478
Query 491 AGAGATGTTCAAGAGTTGATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCT 550
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGAGATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCT 538
Query 551 ACACTAGCAGTTGCTCAGAACATGCGGGAACTCTACCGGTTGGTGCTTGTGGATACTCCT 610
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 539 ACACTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCT 598
Query 611 TTGGCTCCATACTTTTCTGAATGCTTAACGTCAGAGGATCTCGATGACATGAACATAGAG 670
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 CTGGCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAG 658
Query 671 ATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAA 718
Query 731 CTTGGTGGCGCAACAGCGGAGATTATGTCTGACCTTTTGGCCTTTGAGGCCGATAGAAGA 790
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 CTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGA 778
Query 791 GCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGAAAGAAA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 GCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAA 838
Query 851 CTGTACTCTAACTTTGGTCTACTCTATCCATATGGTCACGAAGAGCTTGCTATCTGCGAG 910
||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 839 TTGTACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAG 898
Query 911 GATATAGACCAGGTTCGTGGTGTTATGGAGAAATATCCTCCGTATCAAGCTATATTCTCG 970
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 899 GATATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCC 958
Query 971 AAGATGTCTTATGGAGAGAGCCAGATGCTCGACAAAGCATTTTATGAAGAAGAAGTCAGA 1030
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 959 AAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGA 1018
Query 1031 AGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGG 1090
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1019 AGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGG 1078
Query 1091 TTAAGAGAGCAGGAGATCAGGAACCTTATGTGGATATCTGAATGTGTTGCACAGAACCAG 1150
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1079 TTGAGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAG 1138
Query 1151 AAGTCCAGGATCCACGACAGTGTCGTCTACATGTTCTGATTCTGGTGGTGA-GTCAAAAA 1209
|||||||| |||||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 1139 AAGTCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAA-GAAGTCAAAAA 1197
Query 1210 CACATAAACAAATGTGAAATCTTGAGTCTGGTTTTCTTCATCGCTCCTCATGTACAATCG 1269
|||||||||||||||||||||| |||||||||| || ||| | | | ||||||
Sbjct 1198 CACATAAACAAATGTGAAATCT-GAGTCTGGTT--CT-CAT-G-T----A----CAATCG 1243
Query 1270 TTGGTTTTTACATTCCCTGTTTCTGTCGCTCTGTGTTT-ACCAGAGTGCGTGTATTGAGT 1328
|||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1244 TTGGTTTT-ACATTCCCTGTTTCTGTCGCTCTGCATTTTACCAG--TGCGTGTATTGAGT 1300
Query 1329 ATCTCCC-AATAAGAATCTCTTTTATTTGTTTGTTTGTTGTTGGCCATACACTCTTG-TA 1386
|| |||| ||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 1301 AT-TCCCCAATAAGAATCTCTCC-ATTTGTTTGTTTGTTGTTGGCCATAT--TCTTGATT 1356
Query 1387 AGAT-CAAATTT-ATTTATGATGCATACGAATTACTTTCGCGG 1427
||| | ||| || |||||||||||||||||||||||||||
Sbjct 1357 -GATACTCTTTTTATATATGATGCATACGAATTACTTTCGCGG 1398
> Ahg484647 jgi|Araly1|484647|fgenesh2_kg.5__639__AT3G28715.1
Length=1411
Score = 1724 bits (933), Expect = 0.0
Identities = 1057/1119 (94%), Gaps = 0/1119 (0%)
Strand=Plus/Plus
Query 78 TCAGATCTCCGGCGACAATCATTGAGATCTGAATATCTTACGTTAAGGAGAGAAAGATGT 137
|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 58 TCAGATCTCCGGCGACAATCTTTGAGATCTGAATATCTTACAATCAGGAGAGAAAGATGT 117
Query 138 ACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATATTTGGAGGCGATCGTTAGAG 197
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 118 ACGGATTCGAGGCGCTTACGTTCAACATCCATGGCGGATACTTGGAGGCGATCGTCAGAG 177
Query 198 GCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAATAATCTATGTCAGTGTGAGAACC 257
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 178 GCCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGTGAAAACC 237
Query 258 TAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGCTCTTATCTCCAAAACGAAC 317
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 238 TAGACGACATCAAGATGCATCTCTCTGCTACCAAATACGGTTCTTATCTCCAAAACGAAC 297
Query 318 CGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACTCTTAAGCTTGTTGATGACT 377
|||||||||||||||| || || |||||||||||||||||||| |||||||||||||| |
Sbjct 298 CGTCACCTCTGCATACAACTACAATTGTGGAGAAGTGTACTCTCAAGCTTGTTGATGATT 357
Query 378 ACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATCAGAT 437
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 ACAAGCATATGCTTTGTCAAGCTACTGAACCAATGTCTACCTTTTTAGAGTACATCAGAT 417
Query 438 ATGGCCACATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCATGAGAGAGATG 497
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 418 ATGGCCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAAAGAGATG 477
Query 498 TTCAAGAGTTGATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACACTAG 557
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCAAGAGTTAATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACACTAG 537
Query 558 CAGTTGCTCAGAACATGCGGGAACTCTACCGGTTGGTGCTTGTGGATACTCCTTTGGCTC 617
||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||
Sbjct 538 CAGTTGCTCAGAACATGCGTGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTGGCTC 597
Query 618 CATACTTTTCTGAATGCTTAACGTCAGAGGATCTCGATGACATGAACATAGAGATTATGA 677
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 CATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAGATTATGA 657
Query 678 GGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTTGGTG 737
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTTGGTG 717
Query 738 GCGCAACAGCGGAGATTATGTCTGACCTTTTGGCCTTTGAGGCCGATAGAAGAGCAGTGA 797
|||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 718 GCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCAGACAGAAGAGCAGTGA 777
Query 798 ATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGAAAGAAACTGTACT 857
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 ATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAACTGTACT 837
Query 858 CTAACTTTGGTCTACTCTATCCATATGGTCACGAAGAGCTTGCTATCTGCGAGGATATAG 917
| |||||||| || |||||||| ||||| ||||| |||||||||||||| || || ||||
Sbjct 838 CCAACTTTGGCCTCCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGTGAAGACATAG 897
Query 918 ACCAGGTTCGTGGTGTTATGGAGAAATATCCTCCGTATCAAGCTATATTCTCGAAGATGT 977
| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 898 ATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCCAAGATGT 957
Query 978 CTTATGGAGAGAGCCAGATGCTCGACAAAGCATTTTATGAAGAAGAAGTCAGAAGGCTTT 1037
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 958 CTTATGGAGAAAGCCAGATGCTGGACAAGGCATTTTATGAAGAAGAAGTCAGAAGGCTTT 1017
Query 1038 GCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGGTTAAGAG 1097
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1018 GCTTAGCCTTTGAGCAACAGTTCCATTACGCGGTATTCTTTGCCTATATGAGGTTGAGGG 1077
Query 1098 AGCAGGAGATCAGGAACCTTATGTGGATATCTGAATGTGTTGCACAGAACCAGAAGTCCA 1157
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 AGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAATCAGAAGTCCA 1137
Query 1158 GGATCCACGACAGTGTCGTCTACATGTTCTGATTCTGGT 1196
|||||||||| ||||||||||||||||||||| ||||||
Sbjct 1138 GGATCCACGATAGTGTCGTCTACATGTTCTGAGTCTGGT 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5