BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28715.1 Length=1515 Score E Sequences producing significant alignments: (Bits) Value Ahg484647 jgi|Araly1|484647|fgenesh2_kg.5__639__AT3G28715.1 1923 0.0 Ahg484645 jgi|Araly1|484645|fgenesh2_kg.5__637__AT3G28710.1 1766 0.0 > Ahg484647 jgi|Araly1|484647|fgenesh2_kg.5__639__AT3G28715.1 Length=1411 Score = 1923 bits (1041), Expect = 0.0 Identities = 1158/1213 (95%), Gaps = 13/1213 (1%) Strand=Plus/Plus Query 51 TTCAAAGTTAtcttcttcttcgcgatcacaatctctgcttcgatttcttcttcttcttcA 110 ||||||||||||||||||||||||||| ||| || || ||||||||||||| Sbjct 1 TTCAAAGTTATCTTCTTCTTCGCGATCGCAA--------TC---TT-TTCTTCTTCTTCA 48 Query 111 GAATTCAGATCAGATCTCCGGCGATAATCTTTGAGATCTGAAATTTCTTACAATCAGGAG 170 |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| Sbjct 49 GAATTCAGATCAGATCTCCGGCGACAATCTTTGAGATCTG-AATATCTTACAATCAGGAG 107 Query 171 AGAAAGATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCG 230 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 108 AGAAAGATGTACGGATTCGAGGCGCTTACGTTCAACATCCATGGCGGATACTTGGAGGCG 167 Query 231 ATCGTCAGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAG 290 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| Sbjct 168 ATCGTCAGAGGCCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAG 227 Query 291 TGTGAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTC 350 ||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||| Sbjct 228 TGTGAAAACCTAGACGACATCAAGATGCATCTCTCTGCTACCAAATACGGTTCTTATCTC 287 Query 351 CAAAACGAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTT 410 ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 288 CAAAACGAACCGTCACCTCTGCATACAACTACAATTGTGGAGAAGTGTACTCTCAAGCTT 347 Query 411 GTTGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAG 470 |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 348 GTTGATGATTACAAGCATATGCTTTGTCAAGCTACTGAACCAATGTCTACCTTTTTAGAG 407 Query 471 TACATCAGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCAC 530 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 408 TACATCAGATATGGCCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCAC 467 Query 531 GAGAGAGATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATT 590 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 468 GAAAGAGATGTTCAAGAGTTAATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATT 527 Query 591 GCTACACTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACT 650 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 528 GCTACACTAGCAGTTGCTCAGAACATGCGTGAACTCTATAGGTTGGTGCTTGTGGACACT 587 Query 651 CCTCTGGCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATA 710 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 588 CCTCTGGCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATA 647 Query 711 GAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAG 770 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 648 GAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAG 707 Query 771 AAACTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGG 830 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 708 AAACTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCAGACAGA 767 Query 831 AGAGCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAG 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 AGAGCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAG 827 Query 891 AAACTGTACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGT 950 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 828 AAACTGTACTCCAACTTTGGCCTCCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGT 887 Query 951 GAAGACATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTC 1010 |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 888 GAAGACATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTC 947 Query 1011 TCCAAGATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTC 1070 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 948 TCCAAGATGTCTTATGGAGAAAGCCAGATGCTGGACAAGGCATTTTATGAAGAAGAAGTC 1007 Query 1071 AGAAGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATG 1130 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1008 AGAAGGCTTTGCTTAGCCTTTGAGCAACAGTTCCATTACGCGGTATTCTTTGCCTATATG 1067 Query 1131 AGGTTGCGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAAC 1190 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 AGGTTGAGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAAT 1127 Query 1191 CAGAAGTCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGTGTAA 1250 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1128 CAGAAGTCCAGGATCCACGATAGTGTCGTCTACATGTTCTGAGTCTGGTAAGAACTGTAA 1187 Query 1251 TCTGTCTGaaaaa 1263 ||| ||||||||| Sbjct 1188 TCTTTCTGAAAAA 1200 Score = 326 bits (176), Expect = 4e-88 Identities = 201/213 (94%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 1293 GTTGTTGGTTTTCTTCATTACTCCATTTTTATTAGAGAATCTGCTGTACAATCTTGCGGT 1352 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1201 GTTGTTGGTTTTCTTCATTACTCCATTTTTACCCGAGAATCTGCTGTACAATCTTGCGGT 1260 Query 1353 CTACATTCACTGTTTATGTCGCTCTGCGTGTATCAAAAACTGCTCAATAAGAATCTATCC 1412 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1261 CTACATTCACTGTTTATGTCGCTCTGCGTGTATCAAAAACTCCTTAATAAGAATCTATCC 1320 Query 1413 AATTTGTTTGttttttttCTCCCACATATTCTTGCTTGGTTCCGGTAAACTCTTTGTAAT 1472 ||||||||||||| |||| | | ||||||||||||||| |||||||||||||||||||| Sbjct 1321 AATTTGTTTGTTTGTTTT-TGGC-CATATTCTTGCTTGGATCCGGTAAACTCTTTGTAAT 1378 Query 1473 GTCGAATAATTTACGATGTATACGAATTACTTT 1505 ||||||||||||||||||||||||||| ||||| Sbjct 1379 GTCGAATAATTTACGATGTATACGAATCACTTT 1411 > Ahg484645 jgi|Araly1|484645|fgenesh2_kg.5__637__AT3G28710.1 Length=1398 Score = 1766 bits (956), Expect = 0.0 Identities = 1073/1130 (95%), Gaps = 6/1130 (1%) Strand=Plus/Plus Query 120 TCAGATCTC-CGGCGATAATCTTTGAGATCTGAAAT-TTCTTACAATCAGGA-GAGAAAG 176 ||||||||| | ||| ||||||||||||||| ||| || ||| ||||||| || ||| Sbjct 65 TCAGATCTCTC-ACGACAATCTTTGAGATCTG-AATAATCCTACGATCAGGAGGA-AAAT 121 Query 177 ATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCGATCGTC 236 ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 122 ATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATCGTC 181 Query 237 AGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAGTGTGAG 296 ||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| Sbjct 182 AGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGTGAG 241 Query 297 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTCCAAAAC 356 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 242 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAAAAC 301 Query 357 GAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 416 ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 302 GAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 361 Query 417 GACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 476 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 362 GACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 421 Query 477 AGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCACGAGAGA 536 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 422 AGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAGAGA 481 Query 537 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 541 Query 597 CTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 656 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 CTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 601 Query 657 GCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 716 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 602 GCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 661 Query 717 ATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAGAAACTT 776 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 662 ATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTT 721 Query 777 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGGAGAGCA 836 ||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||| Sbjct 722 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGAGCA 781 Query 837 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAACTG 896 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 782 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAATTG 841 Query 897 TACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGTGAAGAC 956 ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || Sbjct 842 TACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAGGAT 901 Query 957 ATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTCTCCAAG 1016 |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 902 ATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCCAAG 961 Query 1017 ATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTCAGAAGG 1076 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 962 ATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGAAGG 1021 Query 1077 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGGTTG 1136 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1022 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGGTTG 1081 Query 1137 CGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1196 | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 AGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1141 Query 1197 TCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGT 1246 ||||| |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 1142 TCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAAGAAGT 1191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56716374805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5