BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28740.1 Length=1597 Score E Sequences producing significant alignments: (Bits) Value Ahg484649 jgi|Araly1|484649|fgenesh2_kg.5__641__AT3G28740.1 2156 0.0 Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279 643 0.0 Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281 553 2e-156 > Ahg484649 jgi|Araly1|484649|fgenesh2_kg.5__641__AT3G28740.1 Length=1523 Score = 2156 bits (1167), Expect = 0.0 Identities = 1410/1529 (92%), Gaps = 9/1529 (1%) Strand=Plus/Plus Query 21 TAATGGAAACTATATACCTAAttctctctctcttcttcttcttcatcttcctatctctca 80 ||||||||||||||||||||||||||| |||||||||| | || ||||| | |||||| Sbjct 1 TAATGGAAACTATATACCTAATTCTCTGTCTCTTCTTC--C-TCCTCTTCTTCTCTCTCG 57 Query 81 aactcttGTTCGGACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAGTCGACCAT 140 ||||||||||| ||||||||| || ||||||||||||||||||||||| | || |||| Sbjct 58 AACTCTTGTTCCGACCACGGCGGCCCAAACTAAACCTACCGCCGAGTCCTACACGGCCAT 117 Query 141 TTCCGATCATCGGACACCTCCACCTTCTAAAGCTACCACTCCACCGTAGATTtctctctc 200 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 118 TTCCGGTCATCGGACACCTCCACCTCCTAAAGCTACCACTCCACCGTAGATTTCTCTCGC 177 Query 201 tctcAGAATCTTTAAACAACGCCAAGATTTTCTCTC-TCAGCCTCGGCTCTCGTCTAGTT 259 ||||| |||||||||||||||||||||||||||||| || |||| ||| ||||||||||| Sbjct 178 TCTCAAAATCTTTAAACAACGCCAAGATTTTCTCTCTTC-GCCTTGGCACTCGTCTAGTT 236 Query 260 TTTGTTGTTTCTTCTCACGCCGTCGCGGAAGAATGTTTCACTAAGAACGACGTCGTGTTA 319 ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| Sbjct 237 TTTGTTGTTTCTTCTCATGCCGTCGCTGAAGAATGTTTCACCAAGAACGACGTCGTTTTA 296 Query 320 GCTAACCGGCCGGAGTTTCTCGTCGGGAAACATATAGGGTACAACTCTACGACCATGGTT 379 ||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct 297 GCTAACCGGCCGGAGTTTCTCGTCGGGAAACATATAGCGTACAACTCCACCACCATGGTT 356 Query 380 GGTGCGGCTTATGGAGATAGTTGGAGGAATCTTCGACGTATTGGCACCATTGAGATCTTC 439 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 357 GGTGCGGCTTATGGAGATAGTTGGAGGAATCTTCGACGTATTGGTACCATTGAGATCTTC 416 Query 440 TCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAAGATGAGATCCGACGGCTCATA 499 ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| Sbjct 417 TCGTCTCTTAGGCTTAAGAGCTTCTTATCTATCCGTAAAGATGAGATCCGACGGCTCATA 476 Query 500 ATTTGTCTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGAGATGAAACCATTGTTT 559 ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 477 ATTTGTCTATCGAAAAACTCTCAACAAGAGTTTGTGAAAGTGGAGATGAAACCATTGTTT 536 Query 560 ATGTGTTTAACTATCAACAACATCATTAGAATGGTGGCCGGAAAAAGATTCTACGGTGAT 619 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 ATGGGTTTGACTATCAACAACATCATTAGAATGGTGGCCGGAAAAAGATTCTACGGTGAT 596 Query 620 GGAACAGAGAACGACAACGAGGCTAA-ACACGTGAGACAGCTAATTGCCGAGGTAGTTGT 678 ||||||||| |||||| |||||| || ||| || |||||| | ||||| ||||| ||||| Sbjct 597 GGAACAGAGGACGACACCGAGGC-AAGACATGTTAGACAGTTGATTGCGGAGGTGGTTGT 655 Query 679 TAGCGGCGGCGCAGGGAACGCAGCAGACTACTTCCCTATCCTTCGTTACGTAACGAACTA 738 ||| |||||||||||||| |||||||| || ||| ||||||||||||| ||||||| || Sbjct 656 TAGTGGCGGCGCAGGGAATGCAGCAGATTATTTCTCTATCCTTCGTTATATAACGAATTA 715 Query 739 TGAGAAACATGTTAAGAAGTTAGCAGGTCGTGTTGATGAGTTTTTGCAAAGTCTAGTTAA 798 ||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| || Sbjct 716 CGAGAAACATGTCAAGAAGTTAGCTGTTCGGGTTGATGAGTTTTTGCAAAGTCTAGTGAA 775 Query 799 CGAGAAACGTGTGGAGAAAGTAAAAGGTAACACAATGATCGATCATTTACTTTCTCTACA 858 ||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 776 CGAGAAACGTGAGGAGAAAGTAAAGGGTAACACGATGATCGATCATTTGCTTTCTCTACA 835 Query 859 AGAAACTCAGCCTGATTACTACACGGATGTGATCATCAAAGGAATCATACTTGTTATGAT 918 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 AGAAACTCAGCCTGACTACTACACGGATGTGATCATCAAAGGAATCATACTTGTTATGAT 895 Query 919 ACTTGCCGGGACTGATACATCAGCTGGAACGTTAGAATGGGCGATGTCGAATTTGTTGAA 978 ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 896 ACTTGCCGGGACTGACACATCAGCTGGAACTTTAGAATGGGCGATGGCGAATTTGTTGAA 955 Query 979 CCATCCAGAAGTATTACGAAAGGCAAAGACCGAAATCGACGACCAAATCGGTGTAGACCG 1038 |||| | |||||| ||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 956 CCATTCGGAAGTACTACGAAAGGCAAAGACCGAAATCGATGACCAAATTGGTGTAGACCG 1015 Query 1039 GTT-AGTAGAGGAACAAGACATTGTGAAACTTCCTTACCTTCAGCACATTGTGTCAGAGA 1097 ||| | ||||||||||||||||||||||||||||||| |||| | ||||||||||||||| Sbjct 1016 GTTGA-TAGAGGAACAAGACATTGTGAAACTTCCTTATCTTCGGAACATTGTGTCAGAGA 1074 Query 1098 CTTTACGGCTTTATCCGGTGGCTCCAATGCTTTTACCCCACTTAGCATCAGAAGATTGTA 1157 || | || |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1075 CTATGCGACTTTATCCGGTGGCTCCAATGCTTCTACCCCACTTAGCATCAGAAGATTGTA 1134 Query 1158 TAGTTGATGGCTATGACGTTCCACGCGGCACAATCATCTTGGTGAATGCATGGGCCATCC 1217 | || | ||||||||| || || || ||||||||||| ||||| |||||||||||||| | Sbjct 1135 TGGTGGCTGGCTATGATGTCCCGCGTGGCACAATCATATTGGTAAATGCATGGGCCATTC 1194 Query 1218 ATAGAGATCCAAAGTTATGGGAAGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAAAA 1277 |||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||| Sbjct 1195 ATAGAGATCCAAAGTTGTGGGAAGAGCCAGAAAAGTTTAGGCCAGAGAGGTTTGAGAAAG 1254 Query 1278 AAGGAGAGGATAAAAAGTTGATGCCATTTGGGATTGGACGACGATCTTGCCCTGGTTCAG 1337 |||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |||| Sbjct 1255 AAGGGGAGGATAAAAAGTTGATATCATTTGGGATCGGACGACGATCTTGCCCTGGATCAG 1314 Query 1338 GGCTAGCTCAACGGCTAGTGACTTTGGCTCTTGGATCATTGGTCCAATGTTTTGAGTGGG 1397 |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 1315 GGCTAGCTCAACGGCTAGTGACCTTAGCTCTTGGATCGTTGGTCCAATGTTTTGAGTGGG 1374 Query 1398 AGAGGGTTGAAGAAAAGTATCTAGACATGAGAGAAAGTGAAAAAGGAACCACAATGCGAA 1457 |||| || | |||||||||| ||||||||||||||||||||| ||||||||| ||||| | Sbjct 1375 AGAGAGTCGGAGAAAAGTATGTAGACATGAGAGAAAGTGAAAGAGGAACCACGATGCGCA 1434 Query 1458 AAGCTACATCGTTGCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTTTTAGATG 1517 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 1435 AAGCTACATCGTTGCAAGCTATGTGTAAAACTCGTCCCATTGTCCATAAGGTTTTGGATG 1494 Query 1518 CTTCTTGTCCATAACTTTCATCATACAGA 1546 |||||||||||||||| |||||||||||| Sbjct 1495 CTTCTTGTCCATAACTCTCATCATACAGA 1523 > Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279 Length=1560 Score = 643 bits (348), Expect = 0.0 Identities = 1171/1555 (75%), Gaps = 109/1555 (7%) Strand=Plus/Plus Query 21 TAATGGAAACT-ATATACCTAAttctctctctcttcttcttcttcatcttcctatctctc 79 ||||||||||| || | ||||||| | |||||| ||||||||| | ||| | ||||| Sbjct 59 TAATGGAAACTCAT-TTCCTAATTTTATCTCTCGCCTTCTTCTT--T-TTCATTTCTCTT 114 Query 80 aaactcttGTTCGG-ACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAG-TCGAC 137 ||||| ||||| || | | ||| || | |||||||| || ||||| || | | | Sbjct 115 AAACTTTTGTTTGGTA-AAAGGCATAACAAGTTTAACCTACCACCAAGTCC-AGCTAGGC 172 Query 138 CATTTCCGA-TCATCGGACACCTCCACCTTCTAAAGCTA-CCACTCCACCGTAGATTtct 195 || |||| | | || |||||||| ||||| |||||| | || || ||||||| ||| || Sbjct 173 CACTTCC-ATTTATTGGACACCTTCACCTCCTAAAG-AAGCCGCTTCACCGTACATTCCT 230 Query 196 ctctctctcAGAATCTTTAAACAACGCCAAGATTTTCTCTC-TCAGCCTCGG-CTCTCGT 253 |||| |||| |||| || |||| ||||||||| | || ||||||| | ||| Sbjct 231 CTCTTTCTCTCAATCCCTAGGTGGCGCCCCGATTTTCTC-CATCCGCCTCGGAAAC-CGT 288 Query 254 CT-AGTTTTTGTTGT-TTCTTCTCACGCCGTCGCGGAAGAATG-TTTCACTAAGAACGAC 310 || | ||||||| | || || || || |||| |||||||| ||| || || |||||| Sbjct 289 CTCA-CGGTTGTTGTCTCCTCCT-ACTCCATCGCTGAAGAATGCTTT-ACAAAAAACGAC 345 Query 311 GTCGTGTTAGCTAACCGGCCGGAGTTTC--TCGTCGGGAAACATATAGGGTACAAC-TCT 367 | || || || || |||| || ||| || ||||||||||||| | ||||||| || Sbjct 346 ATTGTTTTGGCCAATAGGCCAAAG-TTCATTC-TCGGGAAACATATTGAGTACAACTTC- 402 Query 368 ACGACCATGGTTGGTGCGGCTTATGGAGA-TAGTTGGAGGAATCTTCGACGTATTGGCAC 426 || || ||| ||||| ||||||| || || ||| | || || || ||||| || || Sbjct 403 ACCACTATGACAAGTGCGCCTTATGGTGACTA-CTGGCGAAACCTGCGCCGTATCGGTAC 461 Query 427 CATTGAGATCTTCTCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAA-GATGAGA 485 | | ||||| || || || | | ||| ||| |||| ||||||||||| || ||||||| Sbjct 462 CCTCGAGATATTTTCTTCACACAAGCTCAATGGCTTTTTATCTATCCGT-AAGGATGAGA 520 Query 486 TCCGACGGCTCATAATTTG-T-CTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGA 543 |||||| || | | ||| | ||| | |||||||| ||||||||||||| ||| ||||| Sbjct 521 TCCGAC-ACTTGTTA-TTGCTCCTATCAAAAAACTCGCAACATGGGTTTGCGAAGGTGGA 578 Query 544 GATGAAACCATTG-TTTATGTGTTTAACTATCAACAACA-TCATTAGAATGGTGGCCGGA 601 ||||| || |||| |||||| ||| ||||||||||||| || || ||||| | ||||| Sbjct 579 GATGAGACAATTGTTTTATG-ATTTGACTATCAACAACATTC-TTCGAATGATAGCCGGG 636 Query 602 AAAAGAT-TCTACGGTGATGGAACAGAG-AACGACAACGAGGCTAAAC-ACGTGAGACAG 658 ||| ||| | || || || ||||||||| || || ||| || | | ||||| ||| Sbjct 637 AAACGATAT-TATGGAGAGGGAACAGAGCAA-GATGACGTTGCGCGGCGA-GTGAGCCAG 693 Query 659 CTAATTGCCGAGGTAGTTGT-TAGCGGC-GGCGCAGGGAACGCAGCAGACTACTTCCCTA 716 | |||| |||| | ||| | || ||| ||||| ||||| ||||| || || || || | Sbjct 694 TTGATTGACGAGATTGTT-TACAG-GGCTGGCGCTGGGAATGCAGCCGATTATTTACCGA 751 Query 717 TCCTT-CGTTACG-TAACGA-ACTATGAGAAACATGTTAAGAAGTTAGCAG-GTCGTGTT 772 | || |||| | | || | | | ||||||| || ||| ||||||| | |||| ||| Sbjct 752 T-TTTGCGTT-GGATTAC-AGATTTTGAGAAAGGGGTCAAGGAGTTAGC-GAGTCGAGTT 807 Query 773 GATGAGTTTTTGCAAAGTCTAGTTAACGAGAAACGTGTGGAGAAAGTAAAA-GGTAACAC 831 |||||||||||||| ||||| || | |||||||||||||| |||| |||| |||||||| Sbjct 808 GATGAGTTTTTGCAGAGTCTGGTCGATGAGAAACGTGTGGATAAAG-AAAAGGGTAACAC 866 Query 832 AATGATCGATCATTTAC-TTTCTCTACAAGAAACTCAGCCTGATTACTACACGGATGTGA 890 ||||| ||||| |||| |||| || ||||| ||||||||||||||||| || ||||| | Sbjct 867 TATGATGGATCACTTACTTTTC-CTCCAAGAGACTCAGCCTGATTACTATACAGATGTCA 925 Query 891 -TCATCAAAGGAATCATACTTGTTATGATACTTGCCGGGACTGATACATCAGCTGGAACG 949 || | |||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| Sbjct 926 CTC-TTAAAGGAATCATAATTGTTATGATACTTGCCGGGACTGAAACATTAGCAGGAACT 984 Query 950 TTAGAATGGGCGATGTC-GAATTTGTTGAACCATCCAGAAGTATTACGA-AAGGCAAAGA 1007 ||||||||||||||| | ||||||||||||||||||||||||| || || || || | || Sbjct 985 TTAGAATGGGCGATG-CTGAATTTGTTGAACCATCCAGAAGTACTA-GAGAAAGCGAGGA 1042 Query 1008 CCGAAATCGACGACC-AAATCGGTGTAGACCGGTTAGTAGAGGAA-CAAGACATTGTGAA 1065 |||||||||| ||| |||||||| | ||||||||| |||| ||| | || | | || Sbjct 1043 CCGAAATCGA-TACCAAAATCGGTTTTGACCGGTTAATAGATGAAGC-CGATACT-AAAA 1099 Query 1066 A-CTTCCTTACCTTCAGCACATTGTGTCAGAGACTTTACGGCTTTATCCGGTGGCTCCAA 1124 | || ||||| || || || |||| ||||| |||| ||| |||| | ||||||| Sbjct 1100 ATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCATCCAGCAGCTCCAA 1159 Query 1125 TGCTTTTACCCCACTTA-G-CATCAGAAGATTGTATAGTT-G-ATGGCTATGACGTTCCA 1180 | | |||| || | | ||||| |||||||| ||| | | || || ||||||||| Sbjct 1160 --CAAATGTTCCACATATGACGTCAGATGATTGTAT-GTTGGCA-GGATACGACGTTCCA 1215 Query 1181 CGCGGCACAATCATCTTGGTGAATGCATGGGCCATCCATAGAGATCC-AAAGTTATGGGA 1239 || || | || | |||||||| ||||||||| |||||||| || || ||||||| Sbjct 1216 CGTGGTTCGATGTTATTGGTGAACATATGGGCCATGCATAGAGACCCGTCAG-TATGGGA 1274 Query 1240 AGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAA--AAAAGGAGAGGATAAAAAGTTG 1297 ||| || |||| || ||||| |||||||| || || ||||| | || |||||||| Sbjct 1275 AGACCCCGAAATGTTCAAGCCAGAGAGGTTCGAAAATCAAAAGCTTA--ATCAAAAGTTG 1332 Query 1298 ATGCCATTTGGGATTGGACGACGATCTTGCCCT--GGTTCAGGGCTAGCTCAACGGCTAG 1355 || | ||||||||||||||| || |||| ||| |||| || |||||||| ||| || Sbjct 1333 TTGTCGTTTGGGATTGGACGAAGAGCTTGTCCTGGGGTT--GGCCTAGCTCATCGGTTAC 1390 Query 1356 TGA-CTTTGGCTCTTGGATC-ATTGGTCCAATGTTTTGAGTGGGAGAGGGTTGAAGAA-A 1412 ||| | |||||||||||||| | |||| || |||||||| ||| |||| ||| |||| | Sbjct 1391 TGAGC-TTGGCTCTTGGATCGA-TGGTTCAGTGTTTTGAATGGCAGAGAATTGGAGAAGA 1448 Query 1413 AGTATCTAGACATGAGAGAAAGTGAA--AAAGGAACCACAATGCGAAAAGCTACATCGTT 1470 | ||| | |||| ||||| || ||| | || ||| ||||| || ||| | || Sbjct 1449 A-TATGTTGACACGAGAG-AA--GAACTTATGG--CCATGATGCGTCCTGCGACACCATT 1502 Query 1471 GCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTT-TTAGATGCTTCTTG 1524 || ||| |||||||||||||||||||||||||||||| || ||| |||||| ||| Sbjct 1503 GCTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCTTA-ATGCTT-TTG 1555 > Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281 Length=1545 Score = 553 bits (299), Expect = 2e-156 Identities = 1159/1560 (74%), Gaps = 116/1560 (7%) Strand=Plus/Plus Query 21 TAATGGAAACT-ATATACCTAAttctctctctcttcttcttcttcatcttcctatctctc 79 ||||||| ||| || | ||||||| | | |||| || ||||||| | ||| | ||||| Sbjct 41 TAATGGAGACTCAT-TTCCTAATT-T-TATCTC-TCATCTTCTTTGTTTTCATTTCTCTT 96 Query 80 aaactcttGTTCGG-ACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAG-TCGAC 137 ||||| ||||| || | ||||| | || | |||||||| || |||||| | | | | Sbjct 97 AAACTTTTGTTTGGTA-AACGGCATAGCAAGTTTAACCTACCACCAAGTCCG-GCTTGGC 154 Query 138 CATTTCCGATCATCGGACACCTCCACCTTCTAAAGCTACCACTCCACCGTAGATTtctct 197 | || ||| | || |||||||| ||||| || ||||| || || ||||| | ||| |||| Sbjct 155 CCTTGCCGTTGATTGGACACCTTCACCTCCTGAAGCTCCCGCTTCACCGCACATTCCTCT 214 Query 198 ctctctcAGAATCTTTAAACAACG-CCAAGATTTTCTCTCTCAGCCTCGG-CTCTCGTCT 255 || |||| |||| ||| ||| || | |||||||| ||| ||||||| | ||||| Sbjct 215 CTTTCTCTCAATCCTTAGGTGACGCCCCA-ATTTTCTCCCTCCGCCTCGGAAAC-CGTCT 272 Query 256 -AGTTTTTGTTGTTTC-TTCTCACGCCGTCGCGGAAGAATG-TTTCACTAAGAACGACGT 312 | |||| || || | || || || |||| |||||||| ||| || || |||||| | Sbjct 273 CA-CGGTTGTCGTCTCATCCT-ACTCCATCGCTGAAGAATGCTTT-ACAAAAAACGACAT 329 Query 313 CGTGTTAGCTAACCGGCCGGAGTT--TCTCGTCGGGAAACATATAGGGTACAACTCTACG 370 || || || || |||| ||||| | || ||||||||||||| | ||||||||| || Sbjct 330 TGTTTTCGCCAATAGGCCAGAGTTGAT-TC-TCGGGAAACATATTGAGTACAACTCCACC 387 Query 371 ACCATGGTTGGTGCGGCTTATGGAGA-TAGTTGGAGGAATCTT-CGACGTATTGGCACCA 428 || ||| | ||||| |||| || || | ||| ||| ||| || ||||| | |||| Sbjct 388 ACTATGACTAGTGCGCCTTACGGTGACCA-CTGG-CGAAACTTGCGCCGTATCGCCACC- 444 Query 429 TT-GAGATCTTCTCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAA-GATGAGAT 486 || ||||||||| |||| | || |||||| ||||| ||| | ||||| || |||||||| Sbjct 445 TTGGAGATCTTCGCGTCACATAAGCTTAACGGCTTCTTATATGTCCGT-AAGGATGAGAT 503 Query 487 CCGACGGC-TCATAATTTGTCTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGAGA 545 ||||| | | || | |||| | |||||||| | ||||| ||||| ||||||||||| Sbjct 504 CCGAC-ACTTGTTACTACGTCTCTCCAAAAACTCGCGACATGAGTTTGCGAAAGTGGAGA 562 Query 546 TGAAACCA-TTG-TTTATGTGTTTAACTATCAACAACATCATTAGAATGGTGGCCGGAAA 603 ||| | || ||| ||| || | || |||||||||||| | |||||||||| || || || Sbjct 563 TGAGA-CATTTGCTTTTTGAG-TTGACTATCAACAACGTTTTTAGAATGGTAGCGGGGAA 620 Query 604 AAGATTCTACGGTGATGGAACAGAG-AACGAC-AACGAGGCTAAACACGTGAGACAGCTA 661 | |||| || ||||| || |||||| || ||| || | || | || ||||||||||| Sbjct 621 ACGATTTTATGGTGAGGGCACAGAGCAA-GACGAA-GTTGCGCAGCAAGTGAGACAGCTG 678 Query 662 ATTGCCGAGGTAGTTGTTAGC-G-GC-GGCGCAGGGAACGCAGCAGACTACTTCCCTATC 718 || | ||| | | |||| | | | || ||||| ||||| ||||| ||||| || || ||| Sbjct 679 ATGGACGA-G-A-TTGTAACCAGCGCTGGCGCCGGGAATGCAGCCGACTATTTACCAATC 735 Query 719 CTTCGTTACG-TAACGA-ACTATGAGAAACATGTTAAGAAGTTAGCAG-GTCGTG-TTGA 774 | |||| | | || | | | |||||||| || ||||||||||| | ||| | | || Sbjct 736 ATGCGTT-GGATCAC-AGATTTTGAGAAACGCGTCAAGAAGTTAGC-GATTCG-GATCGA 791 Query 775 TGAGTTTTTGCAAAGTCTAGTTAACGAGAAACGTG-TGGAGAAAGTAAAA-GGTAACACA 832 | |||||||||| |||||||| | |||||||||| | || |||| |||| |||| |||| Sbjct 792 TAAGTTTTTGCAGAGTCTAGTGGATGAGAAACGTGCT-GATAAAG-AAAAGGGTACCACA 849 Query 833 ATGATCGATCATTTACTTTCTCTACAAGAAACTCAGCCTGATTACTACACGGATGTGA-T 891 ||||| ||||| || |||||||| |||| ||||||||||||||| || || ||||| | | Sbjct 850 ATGATAGATCACTTGCTTTCTCTCCAAGCAACTCAGCCTGATTATTATACAGATGTCATT 909 Query 892 CATCAAAGGAATCATACTTGTTATGATACTTGCCGGGA-CTGATAC-ATCAGC-TGGAAC 948 | | |||||| ||||| ||||||||||| ||| | ||| |||| || || || ||| || Sbjct 910 C-TTAAAGGACTCATAGTTGTTATGATAATTG-CTGGATCTGAAACAAT-TGCATGG-AC 965 Query 949 GTTAGAATGGGCGATGTCGAATTTGTTGAACCATCCAGAAGTATT-ACGAAAGGCAAAGA 1007 |||||||||||||||| |||||||||||||||||||||||| || | |||| || | || Sbjct 966 TTTAGAATGGGCGATGTTGAATTTGTTGAACCATCCAGAAGTGTTAAAGAAA-GCTAGGA 1024 Query 1008 CCGAAATCG--ACGACCAAATCGGTGTAGACCGGTTAG-TAGAGGAA-CAAGACATTGTG 1063 ||||||||| |||| |||||||| | |||||||| | | || ||| | || | | Sbjct 1025 CCGAAATCGATACGA--AAATCGGTTTTGACCGGTT-GATTGATGAAGC-GGATACT-AA 1079 Query 1064 AAA-CTTCCTTACCTTCAGCACATTGTGTCAGAGACTTTACGGCTTTATCCGGTGGCTCC 1122 ||| || ||||| || || || |||| ||||| |||| ||| | |||| ||||| Sbjct 1080 AAATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCACCCGGCAGCTCC 1139 Query 1123 AATGCTTTTACCCCACTTA-G-CATCAGAAGATTGTATAGTT-G-ATGGCTATGACGTTC 1178 || | | |||| || | | ||||| ||||| || ||| | | || || ||| ||| Sbjct 1140 AA--CAAATGTTCCACATATGACGTCAGAGGATTGCAT-GTTGGCA-GGATACGACATTC 1195 Query 1179 CACGCGGCA-CAATCATCTTGGTGAATGCATGGGCCATCCATAGAGATCCAAAGT-TATG 1236 |||| || | | || | |||||||| ||||||||| |||||||| || | |||| Sbjct 1196 CACGTGG-ATCGATGTTATTGGTGAACATATGGGCCATGCATAGAGA-CCCGTCTATATG 1253 Query 1237 GGAAGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAAAAAAGGAGAGGATAA--A-AA 1293 |||||| ||||||| || ||||| |||||| || ||||| | | || ||| | || Sbjct 1254 GGAAGACCCAGAAATGTTCAAGCCAGAGAGG-TT--CAAAAATGAAAAGCTTAATCATAA 1310 Query 1294 GTTGATGCCATTTGGGATTGGACGACGATCTTG-CCCTGGTTCA-GGGCTAGCTCAACGG 1351 |||| || | |||||||||||||||||| | || ||| || | || |||||||| ||| Sbjct 1311 GTTGTTGTCGTTTGGGATTGGACGACGAGCCTGTCCC-GG-GAATGGCCTAGCTCATCGG 1368 Query 1352 CTAGTGA-CTTTGGCTCTTGGATC-ATTGGTCCAATGTTTTGAGTGGGAGAGGGTTGAAG 1409 |||||| | |||||||||||||| | |||| || ||||| || ||| |||| ||| || Sbjct 1369 GTAGTGAGC-TTGGCTCTTGGATCGA-TGGTTCAGTGTTTCGAATGGCAGAGAATTGGAG 1426 Query 1410 AA-AAGTATCTAGAC-ATGAGAGAAAG-TGAAAAAGGAACCACAATGCGAAAAGCT-ACA 1465 || || ||| | ||| || | || ||| ||||| | | ||||| | | ||| Sbjct 1427 AAGAA-TATGTTGACAAT-AAAG-AAGATGAAACTGTTGTCTTGATGCGTCCTG-TGACA 1482 Query 1466 TCGTTGCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTTT-TAGATGCTTCTTG 1524 ||||| ||| |||||||||||||||||||||||||||||| || | ||||||| ||| Sbjct 1483 CCGTTGTTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCGT-GATGCTT-TTG 1540 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839774895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5