BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28920.1 Length=1388 Score E Sequences producing significant alignments: (Bits) Value Ahg484662 jgi|Araly1|484662|fgenesh2_kg.5__654__AT3G28920.1 1755 0.0 Ahg494014 jgi|Araly1|494014|fgenesh2_kg.7__3447__AT5G39760.1 449 2e-125 Ahg947918 jgi|Araly1|947918|scaffold_704147.1 364 7e-100 > Ahg484662 jgi|Araly1|484662|fgenesh2_kg.5__654__AT3G28920.1 Length=1352 Score = 1755 bits (950), Expect = 0.0 Identities = 1271/1411 (90%), Gaps = 82/1411 (6%) Strand=Plus/Plus Query 1 atttattattcacatttattaaca-tttttatatctctccctattaaattattttattct 59 |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 1 ATTTATTATTCACATTTATTAATATTTTTTATATCTCTCCCTATTAAATTATCTTATTCT 60 Query 60 ctcttaGCAACATTCATCAACCAGAGCAGATTCACTATCATCATCTTATAACACATCTTC 119 |||||||||||||||||||| | ||||||||| | ||||||||||||||||||||| Sbjct 61 CTCTTAGCAACATTCATCAA-C----CAGATTCAC--T-ATCATCTTATAACACATCTTC 112 Query 120 TTCCTCTAAAGTTTATTTTCTTAAA-CTTATTACAAAAAACATGATCTTCAAAAGTTGAt 178 ||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||| Sbjct 113 TTCCTCTAAAGTTTATTTTCTTAAACCTTATTAC-AAAAATATGATCTCCAAAAGTTGA- 170 Query 179 ttaatctctttttatccatcttcttcttcatttctcaatatcaaacttttctttttttGT 238 ||||||||||||||||||| ||||||||||||||||||| || || | Sbjct 171 TTAATCTCTTTTTATCCATTTTCTTCTTCATTTCTCAATCTC-AA--------------T 215 Query 239 AAGCTTAACATAAACCCTAATATTTTCTTGAtttttttCAAGAAAAT-AAAAAC---A-T 293 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 216 AAGTTTAACATAAACCCTAATATTTTCTTGATTTTTTTCAAGAAAATAAAAAACATAAGT 275 Query 294 -A-A-AGATGCTTGAAGTTAGATCAATGGATATGACTCCAAAATCACCAGAACCCGAATC 350 | | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 276 CATAGAGATGCTTGAAGTTAGATCAATCGATATGACTCCTAAATCACCAGAACCCGAATC 335 Query 351 CGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAA 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 CGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAA 395 Query 411 ACGccaccaccaccaccaccacAACAACAACAAAGTCACTTACAAAGAATGTCTCAAGAA 470 |||||||||||||||||||||||||| | | || || |||||||||||||||||||| Sbjct 396 ACGCCACCACCACCACCACCACAACA-C--C---GTTACATACAAAGAATGTCTCAAGAA 449 Query 471 CCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTTATGCCGTCTCC 530 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 450 CCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTCATGCCGTCTCC 509 Query 531 TTCGTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAA 590 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 TTCTTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAA 569 Query 591 CTTCCACCGCCGTGAAACTGACGATTCCTCCGCCGTTCCACCACCGTCTCTTCTTCCATC 650 ||| |||||||||||| ||||||| |||||| || ||||||||||||||||||||||||| Sbjct 570 CTTTCACCGCCGTGAACCTGACGACTCCTCCTCCCTTCCACCACCGTCTCTTCTTCCATC 629 Query 651 TTCAACAACAACCGCCGCAATTGAGTATCAGCCTCATCACCGTCATCATCCTCCTCCTCC 710 |||||| |||||| |||||||||||||||| |||||||||||||| || ||||||||||| Sbjct 630 TTCAACCACAACCACCGCAATTGAGTATCAACCTCATCACCGTCACCACCCTCCTCCTCC 689 Query 711 GCTAGCTCCTCCG-TTACCACGTAGTCCTAATTCATCTTCTCCGCCGCCTATCTCTTCCT 769 |||||||||||| || || |||||||||| ||||||||||||||| |||||||| |||| Sbjct 690 GCTAGCTCCTCCTCTT-CCTCGTAGTCCTAGTTCATCTTCTCCGCCACCTATCTCCTCCT 748 Query 770 CCTACATGCTTTTAGCTCTCTCCGGTAATAATAAAACCGCACCGTTCTCAGATCTAAACT 829 |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| Sbjct 749 CCTACATGCTTTTAGCTCTCTCTGGTAACAATAAAACCACACCGTTCTCAGATCTAAACT 808 Query 830 TCGCCGCCGCGGCTAACCATCTCTCCGCCACGCCTGGCTCGA-GGAAGCGATTCAGGACG 888 ||||||||||||||||| ||||||||||| |||||||||| | |||| ||||||||||| Sbjct 809 TCGCCGCCGCGGCTAACAATCTCTCCGCCGCGCCTGGCTC-ACGGAAACGATTCAGGACA 867 Query 889 AAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAG 948 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 868 AAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGCTCGAATCGGTTGGAAG 927 Query 949 ATTCAGAAACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAA 1008 ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 928 ATTCAGAAACGCGACGAGGACGAGGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAA 987 Query 1009 GGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGA 1068 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 GGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGT 1047 Query 1069 GCAACCACCGTGCAGAGAAACGATAACGGTATCGGCGGCGAGAACAGTAACGATGATGGA 1128 || | |||| | || ||||||||||||||||||||||| ||||||||||||| Sbjct 1048 GC--C-ACCG--C-------CGTTAACGGTATCGGCGGCGAGAACAATAACGATGATGGA 1095 Query 1129 GTTCGCGGTTTA-GC--TA-A-CGA-CGGTGACGGTGGTGGTGG-GAGATTTGAGAGTGA 1181 ||||||||| | || | | | | | |||||||||||||| | | | ||| || Sbjct 1096 GTTCGCGGTGGAAGCGGTTTAGCTAACAAAGACGGTGGTGGTGGTG-G-TGGGAG-GT-- 1150 Query 1182 TAGTGGAGGAGCTGATGGTGGCGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAG 1241 | || || || |||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1151 T--TG-AG-AG-TGATAGTGGAGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAG 1205 Query 1242 AAAACATCATGTCGTTTTGCAGGGAAAGAGTTATAATAATGGAAGCTTAAGCTTT-GTTT 1300 ||||||| |||||||||||||||||||||| | | ||||||||||||||||||| | || Sbjct 1206 GAAACATCTTGTCGTTTTGCAGGGAAAGAGT-A-A-TAATGGAAGCTTAAGCTTTTGGTT 1262 Query 1301 TTAGCTTT-AGATCATAGAGAGTAAGCACTGGTATTATTATCGTTAATACGTTTT-ATTA 1358 | |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1263 T-AGCTTTTAGATCATAGAGAGTAAGCACTGGTATTACTATCGTTAATACGTTTTTATTA 1321 Query 1359 ATATTAATTAAA-CTCTTTTAGCTCTTTTTT 1388 |||||||||||| |||||||||||| ||||| Sbjct 1322 ATATTAATTAAAACTCTTTTAGCTCCTTTTT 1352 > Ahg494014 jgi|Araly1|494014|fgenesh2_kg.7__3447__AT5G39760.1 Length=1306 Score = 449 bits (243), Expect = 2e-125 Identities = 590/749 (79%), Gaps = 58/749 (8%) Strand=Plus/Plus Query 325 ACTCCAAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCA 384 ||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 115 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 174 Query 385 ATCT-CTTTCAGTAACGGAATCATCAAACGccaccaccaccaccaccacAACAACAACAA 443 || | |||| || ||||| ||||||||||||||||||||||| || | | | | Sbjct 175 ATTTCCTTT-AGCAACGGCATCATCAAACGCCACCACCACCA--TCCTC-TC--C-TC-- 225 Query 444 AGTCACTTACAAAGAATGTCTCAAGAACCACGCGGCGGCGATT-GGTGGTCACGCGCTTG 502 | |||||||||||||||||||| |||||||||||| || || |||||||| || || | Sbjct 226 -TTTACTTACAAAGAATGTCTCAAAAACCACGCGGCGTCG-TTAGGTGGTCATGCTCTCG 283 Query 503 ACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAA-CACCTTCCGATCCAACTTCTCTC 561 |||||||||||||||| ||||||||||| ||||||| | || |||||||||||||||||| Sbjct 284 ACGGTTGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCC-TCCGATCCAACTTCTCTC 342 Query 562 AAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCTCC 621 || ||||| |||||||| || |||||||| |||||||||||||| | ||| | | | Sbjct 343 AAATGTGCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGACAACAACAAC 402 Query 622 GCCGTTCCA-CCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATCA 680 | | | || || || || | ||| || || | | ||||||| | |||||||| Sbjct 403 GAC--T-CATCC-CC-AATC--CATCC-TCCTC--CTTCTACCGCCG---TAGAGTATCA 449 Query 681 GCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCGTTACCACGTAGTCCTAA 740 ||||| |||||||||||||| || || || ||| |||| || |||||||||||||| Sbjct 450 ACCTCACCACCGTCATCATCCACCACCACCACTACCTCCACCACCGCCACGTAGTCCTAA 509 Query 741 TTCAT-CTTCTCCGCCGCCTATCTCTTCCTCCTACATGCTTTTAGCTCTCTCCGG---TA 796 || | ||||||| || || ||||||||||| |||||||| ||| |||||||||| || Sbjct 510 CTC-TGCTTCTCCTCCACCAATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGAACTA 568 Query 797 ATAATAA-AAC--C-GC--A-C--CGTTCTCAGATCTAAACTTCGCC-GCCGCGGCTAAC 846 |||| || ||| | | | | | ||||| ||||| || ||| || || | | ||| Sbjct 569 ATAACAACAACAACAACTTAGCTTCTTTCTCCGATCTCAATTTCTCCGGCGGAAAC-AAC 627 Query 847 CATC-TCTCCGCC-AC--GC-C-T---GGCTCGAGGAAGCGATTCAGGACGAAGTTTAGC 897 || | | || || || | | | || || | || ||||| | || || || || Sbjct 628 CACCACCACCACCAACATACTCTTCACGGTTCTCGTAAAAGATTCCGAACAAAATTCAG- 686 Query 898 TCA-AATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAGATTCAGAA 956 ||| |||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| Sbjct 687 TCAGTTTCAGAAAGAGAAGATGCATGAATTCGCCGAACGACTTGGTTGGAAGATGCAGAA 746 Query 957 ACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTG-AGATCGGAGTTGATAAAGGTGTTC 1015 ||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||| Sbjct 747 ACGTGACGAAGACGATGTTCGTGATTTTTGCCG-GCAGATCGGAGTTGATAAAAGTGTTC 805 Query 1016 TCAAAGTTTGGATGCATAATAACAAAAAC 1044 | ||||||||||||||||| ||||||||| Sbjct 806 TTAAAGTTTGGATGCATAACAACAAAAAC 834 > Ahg947918 jgi|Araly1|947918|scaffold_704147.1 Length=445 Score = 364 bits (197), Expect = 7e-100 Identities = 236/255 (93%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 500 TTGACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAACACCTTCCGATCCAACTTCTC 559 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1 TTGACGGTTGCGGAGAATTCATGCCGTCTCCTTCTTCAACACCTTCCGATCCAACTTCTC 60 Query 560 TCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCT 619 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 TCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAACCTGACGATTCCT 120 Query 620 CCGCCGTTCCACCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATC 679 || | |||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 121 CCTCTGTTCCACCACCGTCTCTTCTTCCATCTTCATCCACAACCGCCACAATTGAGTATC 180 Query 680 AGCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCG-TTACCACGTAGTCCT 738 | |||||||||||||| || ||||||||| |||||||||||| || || ||||||||| Sbjct 181 AACCTCATCACCGTCACCACCCTCCTCCTTTGCTAGCTCCTCCTCTT-CCTCGTAGTCCT 239 Query 739 AATTCATCTTCTCCG 753 | ||||||||||||| Sbjct 240 AGTTCATCTTCTCCG 254 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51878913690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5