BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29075.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896860 jgi|Araly1|896860|Al_scaffold_0005_826 1044 0.0
> Ahg896860 jgi|Araly1|896860|Al_scaffold_0005_826
Length=909
Score = 1044 bits (565), Expect = 0.0
Identities = 779/875 (89%), Gaps = 43/875 (5%)
Strand=Plus/Plus
Query 66 ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGATG 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGTTG 60
Query 126 CCTTATAGTGGAGGCTACGACATCACCGTGACATACGGCCGTTCAATTCCACCGTCCGAC 185
|| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 CCGTATAGTGGAGGCTATGACATCACCGTAACATACGGCCGCTCAATTCCACCGTCCGAC 120
Query 186 GAGACTTGTTACCctctctcctctctctcCGGCGACGCCTTTGAGTATCAGCGACCTAAT 245
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 121 GAGACTTGTTACCCTCTCTCGTCTCGCTCCGGCGACGCCTTTGAGTATCAGCGACCTAAC 180
Query 246 TTCTCTTCTA-ACCACGATTCTTCTGCTTATGACGACCAAGCTCTTAAAACCGAGTACAG 304
|||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTCTTC-ATACCACGAATCTTCTACTTATGACGACCAAGCTCTTAAAACCGAGTACAG 239
Query 305 TAGCTATGCACGACCCGGACCC----G-T-TGGAT-C--TGGATCTGATTTTGGCCGGAA 355
||||||||| |||||||||||| | | ||||| | ||| |||||||||||||||||
Sbjct 240 TAGCTATGCCCGACCCGGACCCATTGGATCTGGATCCGGTGGTTCTGATTTTGGCCGGAA 299
Query 356 ACCTAATTCTGGATATGGAGGGAGAACGGAGGTTGAGTATGGCCGGAAAACTGAATCGGA 415
|||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||
Sbjct 300 ACCTAATTCTGGATATGGCGGAAGAACGGAGGTTGAGTATGGCCGGAAACCAGAATCGGA 359
Query 416 GCATGGATCTGGCTATGGTGGAAGAATTGAGAGCGATTACGTGAAGCCTAGCTATGGCGG 475
||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 360 GCACGGATCTGGCTATGGTGGGAGAATTGAGAGCGATTACATGAAGCCTAGCCATGGCGG 419
Query 476 TCACGAGGATGATGGTGACGATGGTCACAAAAAACATAGTGGTAAGGATTATGATGATgg 535
|| ||||||||| | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 420 TCGTAAGGATGATGATAACGATGGTCACAAAAAAAAAAGTGGTAAGGATTATGATGATGA 479
Query 536 agatgagaagagtaagaagaaggagaaggagaagaagaaggataagaagaaagatggtaa 595
|||||||||||||||||||||||||||| | | |||| | |||||||||||||||||||
Sbjct 480 AGATGAGAAGAGTAAGAAGAAGGAGAAG-A-A-GAAG--G-ATAAGAAGAAAGATGGTAA 533
Query 596 taactctgaagatgatgagtttaagaagaagaagaagaaaga-GCAGTACAAGGAGCATC 654
|||||||||||| |||||||| |||||||||||||||||||| | |||||||||| ||||
Sbjct 534 TAACTCTGAAGAAGATGAGTTCAAGAAGAAGAAGAAGAAAGATG-AGTACAAGGACCATC 592
Query 655 atgatgatgatgattatgatgagaagaagaagaagaagaaagactataatgatgatgatg 714
||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 593 ATGATGATGAT--T-ATGATGAGAAGAAGAAGAAGAAGAAGGACTATGATGATGATGATG 649
Query 715 agaagaagaagaagaa-gcattataatgatgatgatgatgagaagaagaagaagca-taa 772
|||||||||||||||| | | ||| |||||||||| || |||||||||||||| | ||
Sbjct 650 AGAAGAAGAAGAAGAAAG-AGTATCATGATGATGA-GA--AGAAGAAGAAGAAGGAATA- 704
Query 773 ttacaatgatgatgatgatgagaagaagaagaagaagga-gtatcatgatgatgaggata 831
| || ||||||||||| ||| |||||||||||| | | | || ||||||||||| | |
Sbjct 705 T--CA-TGATGATGATGGTGATAAGAAGAAGAAGCACTATG-ATTATGATGATGAGAAGA 760
Query 832 agaagaagaagaagcactatgataatgatgatgatgagaagaagaagaagaaggatcatc 891
|||||||||| | | ||||| || ||||||||| ||| ||||||||| || | || ||
Sbjct 761 AGAAGAAGAA-A-G-ACTATCATGATGATGATGGTGATAAGAAGAAGTAGCACTATGAT- 816
Query 892 gtgatgatgatgatgagaagaagaagaagaaggat 926
| ||||||| || ||||||||||||||||||||
Sbjct 817 -T-ATGATGA-GA--AGAAGAAGAAGAAGAAGGAT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5