BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29200.1 Length=1370 Score E Sequences producing significant alignments: (Bits) Value Ahg484689 jgi|Araly1|484689|fgenesh2_kg.5__681__AT3G29200.1 1834 0.0 > Ahg484689 jgi|Araly1|484689|fgenesh2_kg.5__681__AT3G29200.1 Length=1204 Score = 1834 bits (993), Expect = 0.0 Identities = 1141/1210 (94%), Gaps = 20/1210 (2%) Strand=Plus/Plus Query 2 TCTCTCCCTCTCTCACCAACTCTTTCTCTTTACCCACTGCACCTACCCCCAAACAATCCC 61 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTGTCTCTTACCAACTCTTTCTCTTTACCCACTGCACCTACCCCCAAACAATCCC 60 Query 62 ----T--TTTA-ACATCTCTCATTCCTCTGCTCATGATTCTTTGTCTCTTCCTCTGATTT 114 | |||| |||||||| |||||||| | |||||||| |||||||||||||||||| Sbjct 61 TTTATAGTTTATACATCTCTAATTCCTCTACAGATGATTCTCTGTCTCTTCCTCTGATTT 120 Query 115 CTCAATCCTCTGTTTTCTCCGTCTCCTCTGtttt-tttCACATCAATGGAAGCGTCATTG 173 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 121 CTCAATCCTCTGTTTTCTCCGTCTCCTCTGTTTTGTTTCACATCAATGGAGGCGTCATTG 180 Query 174 TTGATGAGATCGTCTTGTTGCTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAA 233 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGATGAGATCGTCTTGTTGTTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAA 240 Query 234 TTATCAACCTCAACACCCATTTCCACTCTTCTTCCTCTTCCATCAACCAAATCTTCTTTC 293 ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||| Sbjct 241 TTATCAACCTCCACACCCATTTCCACTCTTCTTCCTTTTCCATCATCCAAATCTTCCTTC 300 Query 294 TCTGTTCGTTG-----TT-CTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCAGCTCT 347 || ||||||| || |||||||||||||||||||||||||||||||||||| |||| Sbjct 301 GCTATTCGTTGTTCTCTTCCTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCATCTCT 360 Query 348 GTTCACGCCGTTATGACACTCGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGT 407 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTCACGCCGTTATGACACTTGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGT 420 Query 408 GAGAGTTTGACTCTTGAAGGTATTAGAAACTCTTTGATCCGTCAAGAGGACAGCATTATA 467 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 421 GAGAGTTTGACTCTTGAAGGTATTAGAAACTCATTGATCCGTCAAGAGGATAGCATTATA 480 Query 468 TTTGGGCTATTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCT 527 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTTGGGTTGTTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCT 540 Query 528 TTTGACATGGATGGTTTCAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAG 587 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTTGACATGGATGGTTTTAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAG 600 Query 588 CTTCACGCTAAGGTTGGTAGGTTTAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGAT 647 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 CTTCACGCTAAGGTTGGTAGGTTCAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGAT 660 Query 648 CTACCAGAGCCTATGTTGCCTCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGAT 707 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTACCAGAGCCTATGTTGCCGCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGAT 720 Query 708 TCGATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGACCTTGTTCCAAGACTT 767 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 721 TCAATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGATCTTGTTCCAAGACTA 780 Query 768 GTGAAGAAAGGCGATGATGGTAACTACGGCTCAACAGCTGTCTGTGACGCTATCTGCCTT 827 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 781 GTGAAGAAAGGCGATGATGGTAATTACGGATCAACAGCTGTCTGTGACGCTATCTGCCTT 840 Query 828 CAGTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCC 887 |||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||| Sbjct 841 CAGTGTCTATCAAAGAGGATCCATTACGGTAAATTTGTTGCAGAGGCCAAATTCCAAGCC 900 Query 888 TCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCACTGATGGATATG 947 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 901 TCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCATTGATGGATATG 960 Query 948 CTGACATTCCCGACTGTGGAAGATGCGATAAAGAAGAGAGTTGAGATGAAAACCCGAACA 1007 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 961 CTGACATTCCCGACTGTGGAAGATGCGATTAAGAAGAGAGTTGAGATGAAAACCCGAACA 1020 Query 1008 TACGGGCAAGAAGTGAAAGTTGGGATGGAGGagaaagaagaagaagaagaagaagGGAAT 1067 |||||||||||||||||||| |||||||| ||||||||||||||||||| ||| | | Sbjct 1021 TACGGGCAAGAAGTGAAAGTCGGGATGGAAGAGAAAGAAGAAGAAGAAG--GAA---A-T 1074 Query 1068 GAATCTCATGTTTACAAAATCAGTCCGATCTTAGTTGGTGACTTATATGGAGATTGGATC 1127 |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 1075 GAATCTCATGTTTACAAAATCAGTCCAATCTTAGTTGGTGACTTGTATGGCGATTGGATC 1134 Query 1128 ATGCCTTTAACAAAAGAGGTTCAAGTGGAGTACTTGCTCAGAAGACTGGACTGAGGCAAC 1187 ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 1135 ATGCCCTTAACAAAGGAGGTTCAAGTTGAGTACTTACTCAGAAGACTGGACTGAGACAAG 1194 Query 1188 AACAAAATAA 1197 || ||||||| Sbjct 1195 AAAAAAATAA 1204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51275323365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5