BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29240.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484691 jgi|Araly1|484691|fgenesh2_kg.5__683__AT3G29240.1 1866 0.0
> Ahg484691 jgi|Araly1|484691|fgenesh2_kg.5__683__AT3G29240.1
Length=1194
Score = 1866 bits (1010), Expect = 0.0
Identities = 1119/1172 (95%), Gaps = 6/1172 (1%)
Strand=Plus/Plus
Query 1 ACTAGGGTTACACATCATCaaaaaaaaGGTGATAAAAGATTTGTCTCTTATCCAAAATCC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ACTAGGCCTACACATCATCAAAAAAAAGGTGATAAAAGATTTGTCTCTTATCCAGAATCC 60
Query 61 AAAGGCATATGGAAATGTTTATCTTTAAATACATCAACACCTTAAAGGTTACGGAACTAA 120
||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 61 AAACGCATATGGAAATGTTTATCTTTAAATACATCAACGCCTTAAAGGCTA-AGAACTAA 119
Query 121 AGTGAA-TTGAGTCAGAGAAAAAGAGAAAGAGAGAAGGTAACATGGATGCTTGTTTTCTT 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTGAATTTGAGTCAGAGAAAAAGAGAAAGAGAGAAGGTAACATGGATGCTTGTTTTCTT 179
Query 180 ACCTCAAGATCAATCTCTGGTGTTAAAGAGCTTGTCCCGTTCATCAAAGCGAGAATCTTT 239
|| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 180 ACATCAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCGTTTATGAAAGCAAGAATCTTT 239
Query 240 ACTTGCCCCAAGAGAAATTCTGGCCAATTTGTTACCAGGAAGGTTGCTTCTCCGATCTCT 299
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 240 ACTTGCCCCAAGAGAAATTCTGGCCAATTTATCACCAGGAAGGTTGCTTCTCCGATCTCT 299
Query 300 GTAAATTGTTCTCTTTCGGATTCATGGAAGCCACTGGAAGATGATGCTGATCTCTTCAAG 359
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 300 GTAAATTGTTCTCTTTCGGATTCATGGAAGCCACTGGATGATGATTCTGATCTTTTCAAG 359
Query 360 GATTGTGTCAACAATTCTACATCAGATGCTGATTGGAGGGAGTTCAGGGCAAGGCTTGTT 419
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 360 GATTGTGTCAACAATTCTACAGAAGATGCTGATTGGAGGGAATTCAGGGCAAGGCTTGTT 419
Query 420 GCAGGGGAACAAGCTGCAACGTCCGAGAAGGATCAGCCCTCGTGGTCTAACCCGGACATG 479
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GTAGGGGAACAAGCTGCAACGTCCGAGAAGGATCAGCCCTCTTGGTCTAACCCGGACATG 479
Query 480 GTGGTGGACTATCAGCCATCATCGTCCTCACTGATCACAATTGGAAGCAAATGGGCACAC 539
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 480 GTGGTGGACTATCAGCCATCATCTTCCTCACTGATCACAATTGGAAGCAGATGGGCACAC 539
Query 540 AAGATCCATGAGCCAGAGACAGGCTGCCTCCTAATCGCCACAGAGAAGCTAGACGGTGTC 599
|||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 540 AAGATCCATGAGCCTGAAACAGGCTGCCTTCTAATCGCCACAGAGAAGCTAGATGGTGTC 599
Query 600 CACATCTTCGAAAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGA 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CACATCTTCGAAAAGACGGTGATCCTTCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGA 659
Query 660 GTCATCCTAAACCGTCCATCTCTGATGTCTATTAAGGAGACCAAGTCAACGATATTAGAC 719
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GTCATCTTAAACCGTCCATCGCTGATGTCGATTAAGGAGACCAAGTCAACGATATTAGAC 719
Query 720 ATGGCAGGAACGTTTTCAGACAAAAGACTCTTCTTTGGTGGACCTTTGGAAGAAGGGTTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGGCAGGAACGTTTTCAGACAAAAGACTCTTCTTTGGTGGACCTTTGGAAGAAGGGTTG 779
Query 780 TTCTTGGTGAGTCCAAGGA-GTGGTGGAGACAACGAGGTTGGTAAGAGCGGAGTATTCAG 838
||||||||||||||||| | ||||||||| |||||| ||||||||||||||||| |||||
Sbjct 780 TTCTTGGTGAGTCCAAG-ATGTGGTGGAGGCAACGAAGTTGGTAAGAGCGGAGTGTTCAG 838
Query 839 ACAAGTGATGAAAGGATTGTACTATGGAACGAGAGAGAGTGTAGGATTGGCTGCAGAGAT 898
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 839 ACAAGTAATGAAAGGATTGTACTATGGAACAAGAGAGAGTGTAGGATTGGCTGCAGAAAT 898
Query 899 GGTGAAGAGGAATTTGGTTGGAAGAAGTGAGCTTAGATTCTTTGATGGGTATTGTGGTTG 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GGTGAAGAGGAATTTGGTTGGAAGAAGTGAGTTTAGATTCTTTGATGGGTATTGTGGTTG 958
Query 959 GGAAAAAGAGCAGTTAAAAGCAGAGATCTTGGGAGGGTATTGGACTGTTGCTGCTTGTAG 1018
||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 959 GGAAAAAGAGCAGCTAAAAGCAGAGATCTTGGGAGGTTATTGGACAGTTGCTGCTTGTAG 1018
Query 1019 CTCCACTGTTGTTGAGCTTGGTTCAGCTGTCCAAAGTCATGGTCTTTGGGATGAGGTTCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCCACTGTTGTTGAGCTTGGTTCAGCTGTCCAAAGTCATGGTCTTTGGGATGAGGTTCT 1078
Query 1079 TGGGCTTATTGGGCCTCAAACGGGCTCTGTTATCTAAAC-CTTGTTTTTGTACTGCATTT 1137
||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||
Sbjct 1079 TGGGCTTATTGGGCCTCAAACTGGCTCTGTTATCTAAAATCTTGTTTTTGTAATGCTTTT 1138
Query 1138 CACTAATGGTTTATGGTATGACTATGTGTATG 1169
||||||||||||||||||| ||||| ||||||
Sbjct 1139 CACTAATGGTTTATGGTATAACTAT-TGTATG 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5