BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29670.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936786 jgi|Araly1|936786|scaffold_500977.1 1838 0.0
Ahg896925 jgi|Araly1|896925|Al_scaffold_0005_891 1194 0.0
> Ahg936786 jgi|Araly1|936786|scaffold_500977.1
Length=1404
Score = 1838 bits (995), Expect = 0.0
Identities = 1245/1366 (91%), Gaps = 16/1366 (1%)
Strand=Plus/Plus
Query 75 TCACCAATGACGCTACACGTCATTGAGACTGCCCGAGTCA-CCC--CCACCGA--C-TAC 128
||||||||||||||||| ||||||||||| || |||||| ||| || |||| | ||
Sbjct 16 TCACCAATGACGCTACAAATCATTGAGACTACCGGAGTCACCCCAGCCGCCGATTCGGAC 75
Query 129 TCAGTCATCAACTCAGCCAACT-TGCACA-AACTTCCTTTAACTTTCTTCGACCTTCCAT 186
|| ||| | ||||||||||||| | | || || | |||||||||||||||||||||||||
Sbjct 76 TCGGTCCTTAACTCAGCCAACTCT-CTCACAA-TCCCTTTAACTTTCTTCGACCTTCCAT 133
Query 187 GGCTACTATTCCAGCCAGTCAAAAGAGTCTTCTTCTACGAGCTCACCGAGTCTACTCGTG 246
||||||||||||| |||||||| || ||||||||||| | ||||||||||| |||||||
Sbjct 134 GGCTACTATTCCACCCAGTCAAGCGAATCTTCTTCTACAAACTCACCGAGTCGACTCGTG 193
Query 247 ACCATTTCCACTCCATTATCCTCCCTAAGCTCAAGGACTCTCTGTCCCTTATCCTCCGTA 306
| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 194 AGCATTTCCACTCCATCATCCTCCCTAAGCTCAAGCACTCTCTGTCCCTTGTCCTCCGTA 253
Query 307 ACTATCTCCCTCTCACTGGCCACATCACTTGGGAGCCAAACGAGCCAAAACCGAGCATAA 366
||||||| |||||||| ||||||||||||||||||||| ||||||| || || ||||||
Sbjct 254 ACTATCTTCCTCTCACCGGCCACATCACTTGGGAGCCAGACGAGCCTAAGCCTAGCATAG 313
Query 367 TCGTCTCGGAAAACGGCGTCGTTTTGGTGACTATAGCCGAGAGTGACGCTGACTTTTCTC 426
|||||| ||||| || |||||| || ||||||||||||||||| |||||||||||||
Sbjct 314 TCGTCTATCCAAACGACGCCGTTTTAGTTACTATAGCCGAGAGTGAAGCTGACTTTTCTC 373
Query 427 ATCTTTCCGGTTATGGACAGCGTCCTTTGTCAGAGTTACATGCCTTGGTTCCCAAGTTAC 486
|||||||| |||||||||| ||||||||||| |||||||| |||||| ||||||||||||
Sbjct 374 ATCTTTCCAGTTATGGACAACGTCCTTTGTCCGAGTTACACGCCTTGCTTCCCAAGTTAC 433
Query 487 CGGTTTCTGATGACTCAGCGACCGCTTTCTCCATACAAATCACGTTGTTTCCTAACCAAG 546
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 434 CGGTTTCTGATGACTCAGCGACCGCGTTCTCGATACAAATCACGTTGTTTCCAAACCAAG 493
Query 547 GATTCTCCATAGGTGTTGCAGCACACCATGCTGTTTTAGACGGGAAAACGTCAAGCACTT 606
|||||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||| |
Sbjct 494 GATTCTCCATCGGTGTTGCAGCACACCACGCTGTTTTGGATGGGAAGACGTCAAGCACGT 553
Query 607 TTATCAAAGCTTGGGCTCAAATCTGCAAACAAGAACTTCA-AAGCATGCCGGAGAATCTA 665
|||||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||
Sbjct 554 TTATCAAAGCTTGGGCTCAAATCTGCAAACAACAACTTGACAA-CATGCCGGAGAATCTA 612
Query 666 ACTCCGTCTTATGACCGGTCTTTGATCAAATATCCGACC-TATCTTGATGAAAAGATGAT 724
|||||||||||||||||||||||||||||| |||| ||| | || ||||||||||||||
Sbjct 613 ACTCCGTCTTATGACCGGTCTTTGATCAAAGATCCAACCGGA-CTCGATGAAAAGATGAT 671
Query 725 AGAGTTAGTGAGATCTCTCAAAGAGGACCAAACCAACATCAGAAGCTTGACTTCGCTTCC 784
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 672 AGAGTTAGTGAGATCTCTCAAAGAGGACAAAACCAACATCAGAAGCTTGACTTCTCTTCC 731
Query 785 CTCTAGTAAACTCGGAGACGATGTCGTGTTAGCCACGCTAGTTCTCTCTCGGGCTGATAT 844
| ||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 732 CGCTAGTGAACTCGGAGACGATATCGTGTTAGCCACGCTAGTTCTCTCTCGCGATGATAT 791
Query 845 TGAGAGACTTAGGGAACAAGTCAAGAACGTGTCACCGAGCCTCCACTTGTCGACTTTTGT 904
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 792 CGAGAGACTAAGGGAGCAAGTCAAGAACGTGTCACCGAGCCTTCACTTGTCGACTTTTGT 851
Query 905 CATTGCTTACGCTTACGCGTGGACTTGTTTCGTGAAGGCACGTGGAGGTAATAAAGACAG 964
||| ||||| ||||||||||||| ||| ||||||||||| |||||||| || ||| ||
Sbjct 852 CATCGCTTATGCTTACGCGTGGAGTTGCTTCGTGAAGGCGCGTGGAGGAAACGGAGAGAG 911
Query 965 ATCAGTGAGTCTCTTGTTCGTAGGAGATTTCAGAGACCGGTTAGATCCGAAGCTCCCGGG 1024
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 912 GTCAGTGAGTTTCTTGTTCGTAGGAGATTTCAGAGACCGGTTAGATCCGAAGCTTCCGGG 971
Query 1025 GACTTACTTCGGAAACTGTATGATTCCGGTGGGCTGTTATAACCGTAAGGCGGCGGAGTT 1084
|| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 972 GAATTACTTCGGAAACTGTATGATTCCGGTGGGTTGTTACAACCGTAAGGCGGCAGAGTT 1031
Query 1085 TATGGAAGAGAAGGGATTTGTGACGGCGGCTGAGATTATTAGCGATTTGGTGAAAGGGTT 1144
||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||| ||
Sbjct 1032 TATGGAAGAGAAGGGATTTGTGACGGCGGTTGAGATTCTTAGTGATTTGGTAAAAGGATT 1091
Query 1145 GAGTTCAAGAAAGATAGAGACCATTGCGGACACTTTCGTGGAAGGATTTAGTTTTCAGAG 1204
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1092 GAGTTCAAGAAAGATAGAGACCATTGCGGACACTTTTGTGGAGGGATTTGGTTTTCAGAG 1151
Query 1205 TTGGAGTACACAGTTTGGGACGATAGCCGGGTCGACCCGGTTGGGAGTATACGAGGCGGA 1264
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1152 TTGGAGCACACAGTTTGGGACGGTAGCCGGGTCGACCCGGTTGGGAGTATACGAGGCGGA 1211
Query 1265 TTTCGGGTGGGGAAGACCCGTTAAAGTTGATATTGTCTCCATTGACCAAGGAGAAGCGAT 1324
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1212 TTTCGGGTGGGGAAGACCCGTTAAGGTTGATATTGTCTCCATTGACCAAGGAGAGGCGAT 1271
Query 1325 CGCAATGGCTGAGAGACGTGATGAGTCAGGTGGCGTTGAGATTGGAATGTGTTTGAAAAA 1384
| ||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1272 CTCAATGGCAGAGAGACGTGAGGAATCAGGTGGCGTGGAGATTGGAATGTGTTTGAAAAA 1331
Query 1385 GACTGAAATGGAT-TCGGTCGTGTCTTTTTTCAACAATGGTTTACA 1429
||||||||||||| | |||| |||||||||| ||||||||||||||
Sbjct 1332 GACTGAAATGGATAT-GGTCATGTCTTTTTTTAACAATGGTTTACA 1376
> Ahg896925 jgi|Araly1|896925|Al_scaffold_0005_891
Length=1362
Score = 1194 bits (646), Expect = 0.0
Identities = 1144/1378 (83%), Gaps = 59/1378 (4%)
Strand=Plus/Plus
Query 81 ATGACGCTACACGTCATTGAGACTGCCCGAGTCA-CCC--CCACCGACT---ACTCAGTC 134
||||| |||||| ||||||| | |||| | |||| ||| ||| |||| |||| |||
Sbjct 1 ATGACACTACACATCATTGACATTGCCGGCGTCATCCCTGCCATAGACTCGGACTCGGTC 60
Query 135 ATCAACTCAGCCAACTTG--CACAAACTTCCTTTAACTTTCTTCGACCTTCCATGGCTAC 192
| ||||| | ||||||| | | || | |||||||||||||| || || ||||||||||
Sbjct 61 CTGAACTCGGTCAACTTGTTCGC-AA-TCCCTTTAACTTTCTTTGATCTACCATGGCTAC 118
Query 193 TATTCCAGCCAGTCAAAAGAGTCTTCTTCTACGAG-CTCACCGAGTCTACTCGTGACCAT 251
| |||||||||||||| ||||||||||||| || ||||||||||| | | |||||||
Sbjct 119 TGTTCCAGCCAGTCAAGCGAGTCTTCTTCTA-TAGACTCACCGAGTCGAAGCATGACCAT 177
Query 252 TTCCACTCCATTATCCTCCCTAAGCTCAAGGACT--CTCTGTCCCTTATCCTCCGTAACT 309
||||||||||| ||||||||||||||||| ||| |||| |||||| ||||||| ||||
Sbjct 178 TTCCACTCCATCATCCTCCCTAAGCTCAA--ACTCCCTCTCTCCCTTGTCCTCCGCAACT 235
Query 310 ATCTCCCTCTCACTGGCCACATCACTTGGGAGC-CAAACGAGCCAAAACCGAGCATAATC 368
||||||||||| |||||| |||||||||||| | ||||||||| ||||| |||||| ||
Sbjct 236 ATCTCCCTCTCTCTGGCCGCATCACTTGGGA-CACAAACGAGCTTAAACCTAGCATAGTC 294
Query 369 GTCTCGGAAAACGGCGTCGTTTTGGTGACTATAGCCGAGAGTGACGCTGACTTTTCTCAT 428
||||| ||||| || |||||||||||| ||||||||||||||||||| |||||||||
Sbjct 295 GTCTCTCCAAACGACGCCGTTTTGGTGACGGTAGCCGAGAGTGACGCTGATTTTTCTCAT 354
Query 429 CTTTCCGGTTATGGACAGCGTCCT-TTGTCAGAGTTACATGCCTTGGTTCCCAAGTTACC 487
|||||||| |||||||| |||||| || || |||||||| |||| | |||||||||||
Sbjct 355 CTTTCCGGCTATGGACAACGTCCTGTT-TCCGAGTTACACAACTTGCTCCCCAAGTTACC 413
Query 488 GGTTTCTGATGACTCAGCGACCGCTTTCTCCATACAAATCACGTTGTTTCCTAACCAAGG 547
|||||| |||||||||||||||| ||||| | |||||||||||||||||| ||||||||
Sbjct 414 CGTTTCTAATGACTCAGCGACCGCCTTCTCTACACAAATCACGTTGTTTCCGAACCAAGG 473
Query 548 ATTCTCCATAGGTGTTGCAGCACACCATGCTGTTTTAGACGGGAAAACGTCAAGCACT-T 606
||||||||| || || |||| ||| ||||| ||| | ||||||||||||||||||| | |
Sbjct 474 ATTCTCCATTGGCGTCGCAGGACATCATGCCGTTATGGACGGGAAAACGTCAAGCA-TGT 532
Query 607 TTATCAAAGCTTGGGCTCAAATC-TGCAAACAAGAACTTC----A-A-AG---C-ATGCC 655
||||||||||||||||||| | | |||||||| ||| || | | || | ||||
Sbjct 533 TTATCAAAGCTTGGGCTCATA-CATGCAAACACCAAC-TCGAAAATATAGCCTCTCTGCC 590
Query 656 GGAGAATCTAACTCCGTCTTATGACCGGTCTTTGATCAAATATCCGACC-TATCTTGATG 714
||| | | |||||||||||||||| ||||| ||||||||| || |||| | || ||||
Sbjct 591 GGATATTTTAACTCCGTCTTATGATCGGTCATTGATCAAAGATTTGACCGGA-CTCGATG 649
Query 715 AAAAGATGATAGAGTTAGTGAGATC-TCTCAAAGAGGA-CCAAACCAACATCAGAAGCTT 772
||||||| || || | |||||||| | | |||| | | | |||| ||||||||||||||
Sbjct 650 AAAAGATAATCCAGATGGTGAGATCGT-TGAAAG-GTAGCAAAACTAACATCAGAAGCTT 707
Query 773 GACTTCGCTTCCCTCTAGTA-AACTCGGAGACGATGTCGTGTTAGCCACGCTAGTTCTCT 831
|||| || ||||| | || | |||||||||| || || || || |||||||| || ||||
Sbjct 708 GACTCCGTTTCCCGCAAG-AGAACTCGGAGATGACGTAGTCTTGGCCACGCTCGTGCTCT 766
Query 832 CTCG-GGCTGATATTGAG-AGACTTAGGGAACAAGTCAAGAACGTGTCACCGAGCCTCCA 889
|| | | | || || || || || ||||| |||||||||||||||||||| ||||| ||
Sbjct 767 CTTGCGAC-GACATCAAGAAG-CTCAGGGAGCAAGTCAAGAACGTGTCACCAAGCCTTCA 824
Query 890 CTTGTCGACTTTTGTCATTGCTTACGCTTACGCGTGGACTTG-TTTCGTGAAGGCACGTG 948
||||||||||||||||||||| ||||| ||||||||||| || ||| |||||||||||||
Sbjct 825 CTTGTCGACTTTTGTCATTGCCTACGCCTACGCGTGGACCTGCTTT-GTGAAGGCACGTG 883
Query 949 GAGGTAA-TAAAGACAGATCAGTGAGTCTCTTGTTCGTAGGAGATTTCAGAGACCGGTTA 1007
|||| || ||| |||||||||| | || | |||||||||||||||||||| ||||||
Sbjct 884 GAGG-AAGCGGAGAGAGATCAGTGAATTTCCTCTTCGTAGGAGATTTCAGAGAACGGTTA 942
Query 1008 GATCCGAAGCTCCCGGGGACTTACTTCGGAAACTGTATGATTCCGGTGGGCTGTTATAAC 1067
||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 943 GATCCGAAGCTTCCGGCGACTTACTTCGGAAACTGTATGTTTCCGGTGGGTTGTTACAAC 1002
Query 1068 CGTAAGGCGGCGGAGTTTATGGAAGAGAAGGGATTTGTGACGGCGGCTGAGATTATTAGC 1127
|||||||||| |||||||| ||||||||| ||| | || ||||| | |||| || |||||
Sbjct 1003 CGTAAGGCGGTGGAGTTTACGGAAGAGAAAGGACTCGTAACGGCCGTTGAGGTTCTTAGC 1062
Query 1128 GATTTGGTGAAAGGGTTGAGTTCAAGAAAGATAGAGACCATTGCGGA-CACTTTCGTGGA 1186
|||||||| ||||| || ||||||||||| |||||||| || | | | | || | |||
Sbjct 1063 GATTTGGTCAAAGGATTAAGTTCAAGAAAAATAGAGACGATCGTGAAGGA-GTTAGCGGA 1121
Query 1187 -AGGATTTAG-TTTTCAGAGTTGGAGTACACAGTTTGGGACGATAGCCGGGTCGACCCGG 1244
| | ||| | ||| || | ||||||||||||||||||| |||||||||||||||||
Sbjct 1122 CA-G-TTTTGATTTCCAAAAAGGGAGTACACAGTTTGGGACTATAGCCGGGTCGACCCGT 1179
Query 1245 TTGGGAGTATACGAGGCGGATTTCGGGTGGGGAAGACCCGTTAAAGTTGATATTGTCTCC 1304
|||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1180 TTGGGAATATACGAGTCGGATTTCGGGTGGGGAAGACCCGTTAAAGTTGATGTTGTCTCT 1239
Query 1305 ATTGACCAAGGAGAAGCGATCGCAATGGCTGAGAGACGTGATGAGTCAGGTGGCGTTGAG 1364
||||| |||||||||||| || | ||||| ||||||||||| || |||||||| || |||
Sbjct 1240 ATTGATCAAGGAGAAGCGTTCTCTATGGCGGAGAGACGTGACGAATCAGGTGGTGTGGAG 1299
Query 1365 ATTGGAATGTGTTTGAAAAAGACTGAAATGGATT-CGGTCGTGTCTTTTTTCAACAAT 1421
||||| |||||||||||||||||||||||||| || | || ||||||||||||||
Sbjct 1300 ATTGGGATGTGTTTGAAAAAGACTGAAATGGACAACGTTA-TGGCTTTTTTCAACAAT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5