BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29770.1 Length=1577 Score E Sequences producing significant alignments: (Bits) Value Ahg484732 jgi|Araly1|484732|fgenesh2_kg.5__724__AT3G29770.1 1934 0.0 > Ahg484732 jgi|Araly1|484732|fgenesh2_kg.5__724__AT3G29770.1 Length=1349 Score = 1934 bits (1047), Expect = 0.0 Identities = 1266/1369 (92%), Gaps = 26/1369 (2%) Strand=Plus/Plus Query 1 CTTTCTCGCCACCACTTTCACCTGAATTCTCACGTCACTCTTTCTCTCTAAACCACCATA 60 ||||||| |||||||||||||||||| || |||||||||| |||||||||| | ||||| Sbjct 1 CTTTCTCTCCACCACTTTCACCTGAA-TCCCACGTCACTC--TCTCTCTAAAACTCCATA 57 Query 61 AAGCTCAAACTTTTTCTCATTCTCTCTCT--AAAGCT-AAAATCTTTTTCACACTCTTCT 117 |||||||||| |||||||||||||||||| ||| || | |||||||||||||||||||| Sbjct 58 AAGCTCAAACCTTTTCTCATTCTCTCTCTCGAAAACTCACAATCTTTTTCACACTCTTCT 117 Query 118 TCATGTTCAAGCAATGGGAAACCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAAGAA 177 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 118 TCATGTTCAAGCAATGGGAAATCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAA-AA 176 Query 178 AA-GAAAACCCATCACAAAAAGACAATCTTCTATCGGAGCTTCTTCTTCCGGGTCGGGTC 236 || |||||||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 177 AACGAAAACCCATCACAAAAAGACAATCTTCCATTGGAGTTTCTTCTTCCGGGTCGGGTC 236 Query 237 TTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGT 296 Query 297 TCGAAGATGCTTTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGC 356 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TTGAAGATGCTGTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGC 356 Query 357 AAAACGGTGGTGGAGGATCGTTGCCGTTTGATCGGTCGGCTTCACAACGTTATCAAGGTT 416 ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 357 AAAACGGCGGTGGA---TCGTTGCCGTTTGATCGGTCGGCTTCGCAACGTTATCAAGGTT 413 Query 417 CTTGTTCGAAGAAGAACCAGTTGCCTCGAAGCTCGAGTTCGAGGTCAAGGTCTTCTACAG 476 |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| | Sbjct 414 CTTGTTCGAAGAAGAATCAGTTGCCTCGAAGTTCAAGTTCGAGGTCAAGGTCTTCTACGG 473 Query 477 ATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTATAAAGCTAGATGACTTGGAAA 536 |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| | Sbjct 474 ATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTGTGAAGGTAGATGACTTGGAGA 533 Query 537 CAAACCATTTTGTCCTTGTTCATGGAGGTAGTTTTGGCGCTTGGTGTTGGTATAAAACCA 596 ||||||||||||| || | |||||||| ||||||| |||||||||||||||||||||| Sbjct 534 CAAACCATTTTGTTCTCATCCATGGAGGGGGTTTTGGTGCTTGGTGTTGGTATAAAACCA 593 Query 597 TTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCAGGTTGCGGTA 656 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 594 TTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCTGGTTGCGGTA 653 Query 657 TTAACTCGATTAATATAAATGGCATCGCTAGTTTGTCACAATATGTCAAGCCACTTACCG 716 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 654 TTAACTCGATTAATATAAATGGCATTGCTAGTTTGTCACAATATGTGAAGCCACTTACCG 713 Query 717 ATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATATTGGTCGGTCACGATTTTGGTG 776 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 714 ATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATCTTGGTTGGTCATGATTTTGGTG 773 Query 777 GAGCATGTATATCTTATGCTATGGAACTCTTTCCTTCAAAGATTTCGAAAGCGGTTTTCC 836 |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| Sbjct 774 GAGCATGTATATCTTATGCTATGGAAATGTTTCCTTCAAAGATTTCAAAAGCGGTTTTCC 833 Query 837 TCGCTGCAGCGATGTTAACAAATGGTCAAAGTACACTCGATATGTTCTCCTTGAAGGCCG 896 ||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| | Sbjct 834 TCGCTGCGGCGATGTTGACTAATGGTCAAAGTACACTGGATATGTTCTCCTTGAAGGCAG 893 Query 897 GTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAATGGTAATGAAAACC 956 ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 894 GTCAGAACGATTTAATGAGAAAAGCTCAGATTTTTATCTACAAAAATGGTAATGAAAACC 953 Query 957 CTCCAACCGCAATTGACTTAGACAAATCTCTTCTCAAAGACCTTTTGTTCAACCAAAGCC 1016 |||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||| Sbjct 954 CTCCAACCGCCATTGACTTAGACAAATCTCTTCTCAGAGACCTTCTGTTCAATCAAAGCC 1013 Query 1017 CTTCGAAGGACGTTGCATTGGCTTCTGTATCAATGAGGTCAATTCCATTTGCGCCGGTTC 1076 |||| |||||| |||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct 1014 CTTCAAAGGACATTGCATTGGCCTCTGTTTCAATGAGGTCAATCCCATTTGCGCCGGTTC 1073 Query 1077 TTGAAAAACTCTCTCTTTCGGATGCTAACTACGGATCAGTTAGACGGTACTATATAGAGA 1136 |||| ||||||||| | || |||||||||||||||||||||||||||||||| ||||||| Sbjct 1074 TTGAGAAACTCTCTATCTCAGATGCTAACTACGGATCAGTTAGACGGTACTACATAGAGA 1133 Query 1137 CGTTAGAAGACAATGCTATACCAGTGACTCTTCAAGAAAACATGATCAATAGTAGTCCTC 1196 || |||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| | Sbjct 1134 CGCTAGAAGACAATGCTATACCAATGACTGTCCAAGAAAACATGATTAATAGTAGTCCAC 1193 Query 1197 CTGAAAAGGTTTATCGGTTAAAAGGCGCCGACCATGCTCCTTTCTTTTCCAAACCACAAG 1256 ||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 1194 CTGAAAAAGTTTACCGGTTAAAAGGCGCTGACCATGCTCCTTTCTTTTCTAAGCCACAAG 1253 Query 1257 CTTTGCATAAACTTCTGCTTGAGATCGCCAGAATTAGCCCTGCTTAACTCTTTATCATGA 1316 ||||||||||||||||||| ||||| |||||||| ||| | || | || | | | | | Sbjct 1254 CTTTGCATAAACTTCTGCTCGAGATTGCCAGAATCAGC--T-CT-A-CT-TA-A-C-T-A 1303 Query 1317 TATTCACTAACTGGTGTT-TCAAAGTGTCT-CATCAGATCTCTCTTCCT 1363 | | |||||||||||||| | |||||| || ||| |||||||||||||| Sbjct 1304 T-T-CACTAACTGGTGTTCT-AAAGTGGCTTCATGAGATCTCTCTTCCT 1349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59077969995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5