BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30180.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484717 jgi|Araly1|484717|fgenesh2_kg.5__709__AT3G30180.1 2776 0.0
Ahg494085 jgi|Araly1|494085|fgenesh2_kg.7__3518__AT5G38970.1 1203 0.0
> Ahg484717 jgi|Araly1|484717|fgenesh2_kg.5__709__AT3G30180.1
Length=1740
Score = 2776 bits (1503), Expect = 0.0
Identities = 1675/1755 (95%), Gaps = 23/1755 (1%)
Strand=Plus/Plus
Query 4 CCTATATAAACAACGCCACACACACCCATTTAGTCCC-AACCAAAGACTCTTTACCATCT 62
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1 CCTATATAAACAATGCCACACACACCCATTTAGTCCCAAACCAAAGACTCTTAACCATCT 60
Query 63 CTTTCTCTCTCTGT-TTG--AAGACATAGCACaaa-a-aaaaaaaaaaaGACAGAGCaaa 117
| |||| |||| | | | | | | | ||| | || ||||||| | | | |||
Sbjct 61 C--TCTCCCTCTATCTCGCTCTCTCTTTG-A-AAACAGAACCAAAAAAA-A-A-A--AAA 111
Query 118 aaaaCACACAAAGATGGGCATAATGATGATGATTTTGGGTCTTCTTGTGATCATTGTTTG 177
|||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 112 AAAA-A-ACAAAGATGGGCATAACGATGATGATTTTGGGTCTTCTTGTGATCATTGTTTG 169
Query 178 TTTATGTACTGCTCTTCTCCGATGGAACCAGATGCGATATTCTAAGAAAGGTCTTCCTCC 237
||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 170 CATATGTTCTGCTCTTCTCCGATGGAACCAGATGCGATATTCCAAAAAAGGTCTTCCTCC 229
Query 238 TGGAACCATGGGCTGGCCAATATTTGGTGAAACGACTGAGTTTCTTAAACAAGGACCAGA 297
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 230 TGGAACCATGGGCTGGCCAATTTTTGGTGAAACCACTGAGTTTCTTAAACAAGGACCAGA 289
Query 298 TTTCATGAAAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCACATTCTTGGTTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTTCATGAAAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCACATTCTTGGTTG 349
Query 358 CCCAACAATAGTCTCAATGGACGCAGAGTTAAACAGATACATTCTAATGAATGAATCGAA 417
|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 350 CCCAACAATAGTCTCAATGGACGCAGAGCTAAACAGATACATTTTAATGAACGAATCGAA 409
Query 418 AGGACTTGTTGCCGGTTACCCGCAATCTATGCTTGATATTCTAGGGACATGCAACATAGC 477
||||||||| ||||||||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct 410 AGGACTTGTCGCCGGTTACCCACAATCGATGCTCGATATCCTCGGGACATGCAACATAGC 469
Query 478 TGCGGTTCATGGCCCGAGCCACCGGCTAATGAGAGGCTCGTTGCTTTCTTTAATAAGCCC 537
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 470 CGCGGTTCATGGCCCGAGCCACCGGCTCATGAGAGGCTCGTTGCTTTCTTTAATAAGCCC 529
Query 538 AACCATGATGAAAGACCATCTCTTGCCTAAGATTGATGATTTCATGAGAAACTATCTTTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GGCCATGATGAAAGACCATCTCTTGCCTAAGATTGATGATTTCATGAGAAACTATCTTTG 589
Query 598 TGGTTGGGATGATCTTGAGACAGTTGATATCCAAGAAAAGACCAAACATATGGCATTTTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TGGTTGGGATGATCTTGAGACAGTTGATATCCAAGAAAAGACCAAACATATGGCATTTTT 649
Query 658 ATCATCGTTGTTACAAATAGCTGAGACTTTGAAAAAACCAGAGGTTGAAGAATATAGAAC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTCATCGTTGTTACAAATAGCTGAGACTTTGAAAAAACCAGAGGTTGAAGAATATAGAAC 709
Query 718 AGAGTTTTTCAAGCTTGTTGTGGGAACTCTATCGGTCCCGATCGATATCCCGGGAACGAA 777
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 710 AGAGTTTTTCAAGCTTGTTGTGGGAACTCTTTCGGTCCCGATCGATCTCCCGGGAACGAA 769
Query 778 TTACCGCAGTGGAGTCCAAGCAAGAAACAACATCGATAGGTTATTGACAGAACTGATGCA 837
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 770 CTACCGCAGTGGAGTCCAAGCAAGAAACAATATCGATAGGTTATTGACAGAACTGATGCA 829
Query 838 AGAAAGAAAAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGATGAAGAAGGA 897
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AGAAAGAAGAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGATGAAGAAGGA 889
Query 898 AGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTGGTAACGATCTTGTA 957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 890 AGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTCGTAACGATCTTGTA 949
Query 958 TTCCGGTTATGAGACTGTCTCTACAACCTCCATGATGGCTCTTAAGTATCTCCATGATCA 1017
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 950 TTCGGGTTATGAGACTGTCTCTACAACTTCTATGATGGCTCTTAAGTATCTCCATGATCA 1009
Query 1018 TCCAAAAGCTCTTGAAGAACTCAGAAGAGAACATTTGGCTATAAGGGAGAGAAAACGACC 1077
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TCCAGAAGCTCTTGAAGAACTCAGAAGAGAACATTTGGCTATAAGGGAGAGAAAACGACC 1069
Query 1078 TGACGAACCGCTCACTCTCGACGATATTAAATCGATGAAATTCACTCGAGCTGTGATCTT 1137
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1070 TGACGAACCGCTCACTCTCGACGATATTAAATCTATGAAATTCACTCGAGCTGTGATCTT 1129
Query 1138 TGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTTAGGAAAACTACTCACGACTT 1197
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1130 TGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTGAGGAAAACTACTCACGACTT 1189
Query 1198 AGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATACACAAGAGAGAT 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATACACAAGAGAGAT 1249
Query 1258 TAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATGGAGATGGATGGA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATGGAGATGGATGGA 1309
Query 1318 AAAGAGCTTAGAATCAAAGAGCTATTTCTTACTCTTTGGAGGTGGAGTTAGGCTTTGCCC 1377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1310 AAAGAGCTTAGAATCAAAGAGCTATTTCTTACTCTTTGGAGGTGGAGCTAGGCTTTGCCC 1369
Query 1378 TGGAAAGGAACTAGGAATCTCGGAAGTCTCAAGCTTCCTTCACTACTTTGTTACAAAATA 1437
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1370 TGGAAAGGAACTAGGAATCTCTGAAGTCTCAAGCTTCCTTCACTACTTTATTACAAAATA 1429
Query 1438 TAGATGGGAAGAGAATGGAGAAGACAAATTAATGGTCTTTCCAAGAGTTTCTGCACCAAA 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CAGATGGGAAGAGAATGGAGAAGACAAATTAATGGTCTTTCCAAGAGTTTCTGCACCAAA 1489
Query 1498 AGGATACCATCTTAAGTGTTCACCTTACTGACTAGTTTTGTCCTAATATTGAAAAATGTG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AGGATACCATCTTAAGTGTTCACCTTACTGACTAGTTTTGTCCTAATATTGAAAAATGTG 1549
Query 1558 TAAATAAATCTATTAAGGGTCATTTTGTAGGGCTAATTAACCTATTTTATCTATTAAATC 1617
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TAAATAAATCAATGAAGGGTCATTTTGTAGGGCTAATTAACCTATTTTATCTATTAAATC 1609
Query 1618 TCTCAAGATCATAGAGGAGATGGATAATGTACagagagaaagagagaagaagaaaatgga 1677
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 1610 TCTCAAGATCTTAGAGGAGATGGATAATGTACAGAGAGA--G-GAGAAGAAGAAAATGTA 1666
Query 1678 atatagaaaaaaataaaatatttgaaatGTTGAGCTTAGTCTCTTAT--CTTGTAAATTT 1735
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1667 ATATAGAAAAAA-TAAAATATTTGAAATGTTGAGCTTAGTCTTTTATATCTTGTAAATTT 1725
Query 1736 GTAACCCATAAATTT 1750
|||||||||||||||
Sbjct 1726 GTAACCCATAAATTT 1740
> Ahg494085 jgi|Araly1|494085|fgenesh2_kg.7__3518__AT5G38970.1
Length=1666
Score = 1203 bits (651), Expect = 0.0
Identities = 1175/1424 (83%), Gaps = 52/1424 (4%)
Strand=Plus/Plus
Query 129 AGATGGGCATAATGATGATGATTTTGGGTCTTCT-TGTGATCATTGT-TTGTTTATGTAC 186
||||||| | ||||||| |||| |||||||||| | | |||||||| | | | ||| |
Sbjct 28 AGATGGGAACAATGATGGTGATGATGGGTCTTCTCT-TTATCATTGTCTCG-CTCTGTTC 85
Query 187 TGCTCTTCTCCGATGGAACCAGATGCGATATTCTAAGAAAGGTCTTCCTCCTGGAACCAT 246
|||||||| |||||||| |||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 86 CGCTCTTCTTCGATGGAATCAGATGCGATATACCAAGAATGGTCTCCCTCCTGGAACCAT 145
Query 247 GGGCTGGCCAATATTTGGTGAAACGACTGAGTTTCTTAAACAAGG-ACCAGATTTCATGA 305
|||||||||||| ||||||||||| || |||||||| ||||| || ||| | |||||||
Sbjct 146 GGGCTGGCCAATCTTTGGTGAAACCACCGAGTTTCTCAAACACGGCCCCA-ACTTCATGA 204
Query 306 AAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCA-CATTCTTGGTTGCCCAACA 364
|||||||||||| ||||||||| ||| ||||| ||||| | |||||||||| |||||
Sbjct 205 GAAACCAAAGACTCCGATATGGGAATTTTTTCAAATCTCATC-TTCTTGGTTGTCCAACG 263
Query 365 ATAGTCTCAATGGACGCAG-AGTTAAACAGATACATTCTAATGAATGAATCGAAAGGACT 423
||||||| |||||| ||| || |||||||||||||| ||| ||| ||||| ||||| |
Sbjct 264 TTAGTCTCGATGGACTCAGAAG-TAAACAGATACATTTTAAAGAACGAATCAAAAGG-TT 321
Query 424 T-GTTGCC-GGTTACCCGCAATCTATGCTTGATATTCTAGGGACATGCAACATAGCTGCG 481
| ||| || |||||||| ||||| |||||||||||||| || || |||||||| ||||||
Sbjct 322 TGGTT-CCTGGTTACCCACAATCCATGCTTGATATTCTCGGAACTTGCAACATGGCTGCG 380
Query 482 GTTCATGGCCCGAGCCACCGGCTAATGAGAGGCTC-GTTGCTTTCT-TTAATAAGCCCAA 539
||||| || ||||||||||||| |||||||| || || || ||| || |||||| | |
Sbjct 381 GTTCACGGTTCGAGCCACCGGCTTATGAGAGGTTCACTT-CTCTCTCTT-ATAAGCTCGA 438
Query 540 CCATGATGAAAGACCATCTCTTGCCT-AAGATTGATGATTTCATGAGAAACTATCTTTGT 598
||||||||| ||| ||| |||||||| ||| ||||| | |||||||||| ||||||| ||
Sbjct 439 CCATGATGAGAGATCATATCTTGCCTAAAG-TTGATCACTTCATGAGAAGCTATCTTGGT 497
Query 599 -GGTTGGGATGATCTTGA-GACAGTTGATATCCAAGAAAAGACCAAACATATGGCATTTT 656
| ||| |||| ||||| | | |||||||||| || ||||||||||||||||||||||
Sbjct 498 CAG-TGGAATGAGCTTGAGGTTA-TTGATATCCAGGATAAGACCAAACATATGGCATTTT 555
Query 657 TATCATCGTTGTTACAAATAGCTGAGACTTTGAA-AAAACCAGAGGTTGAAGAATAT-AG 714
|||| || || |||||| |||| || ||| || ||||||| |||| |||| | |
Sbjct 556 TATCTTCACTGACACAAATCGCTGGGAATTT-AAGAAAACCATTCATTGAGGAAT-TCAA 613
Query 715 AACAGAGTTTTTCAAGCTTGTTGTGGGAACTCTATCGGTCCCGATCGAT-ATCCCGGGAA 773
||| | ||| |||||||||||||| |||||| ||||||| ||||||||| |||| || |
Sbjct 614 AACTGCGTTCTTCAAGCTTGTTGTTGGAACTTTATCGGTTCCGATCGATCTTCCC-GGCA 672
Query 774 CGAATTACCGCAG-TGGAGTCCAAGCAAGAAACAACATCGATAGGTTAT-TGACAGAACT 831
| ||||| || | ||| ||||||||||||| ||||| ||| |||| | | | ||| ||
Sbjct 673 CAAATTATCGTTGCGGGA-TCCAAGCAAGAAAGAACATTGATCGGTT-TCTAAGAGAGCT 730
Query 832 GATGCAAGAAAGAAAAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGATGAA 891
|||||||||| | | ||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 731 GATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTTACTTGATGAA 790
Query 892 GAAGGAAGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTGGTAACGAT 951
||||||||||||||||||| ||||||||| ||||||||||||| ||||| || |||||
Sbjct 791 GAAGGAAGATAACCGATACCCATTAACCGATGAAGAGATAAGAGACCAAGTCGTGACGAT 850
Query 952 CTTGTATTCCGGTTATGAGACTGTCTCTACAACCTCCATGATGGCTCTTAAGTATCTCCA 1011
|||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 851 TTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTAAGTACCTTCA 910
Query 1012 TGATCATCCAAAAGCTCTTGAAGAACTCAGAAGAGAACATTTGGCTATAAGGGAGAGAAA 1071
|||||| |||||||||||| ||||||||||| ||| ||||||||| ||||||| || ||
Sbjct 911 TGATCACCCAAAAGCTCTTCTAGAACTCAGAACAGAGCATTTGGCTTTAAGGGAAAGTAA 970
Query 1072 ACGACCTGACGAACCGCTCACTCTCGACGATATTAAA-TCGATGAAATTCACTCGAGCTG 1130
|||||| |||||||| || ||| || ||| | ||| || ||||| |||||| ||||||
Sbjct 971 ACGACCAGACGAACCACTTGGTCTTGAGGATGT-AAAGTCAATGAAGTTCACTAGAGCTG 1029
Query 1131 TGATCTTTGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTTAGGAAAACTACTC 1190
| || |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1030 TTATTTTTGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGGAAAACTACTC 1089
Query 1191 ACGACTTAGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATACACAA 1250
||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1090 GTGACTTAGAAATCAATGGTTATTTAATCCCAAAAGGATGGAGAATTTATGTATACACGA 1149
Query 1251 GAGAGATTAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATGGAGAT 1310
| || ||||| || ||| || ||| |||||||| ||| |||||||||| ||||||||||
Sbjct 1150 GGGAAATTAATTACGATGCAAATCTATATGAAGACCCATTGATCTTTAATCCATGGAGAT 1209
Query 1311 GGATGGAA-AAGAGCTTAGAATCA-AAGAGCT-ATTTCTTACTCTTTGGAGGTGGAGTTA 1367
||||| || |||||||| || ||| || | || || ||| | ||||||||||| | |
Sbjct 1210 GGATG-AAGAAGAGCTTGGAGTCACAAAA-CTCATG-CTTTGTGTTTGGAGGTGG-GACA 1265
Query 1368 -GGCTTTGCCCTGGAAAGGAACTAGGAATC-TCG-GAAGTCTCAAGCTTCCTTCACTACT 1424
||||||| |||| || |||||||| || ||| || |||| |||||||| || ||||
Sbjct 1266 AGGCTTTGTCCTGCCAATGAACTAGGGATTGTCGAGA--TCTCGAGCTTCCTCCATTACT 1323
Query 1425 TTGTTACAAAATATAGATGGGAAGAGAAT-GGAGAAGACAAATTAATGGTCTTTCCAAGA 1483
||||||| | ||| |||||||| || ||| |||| || |||||||||| |||||||||
Sbjct 1324 TTGTTACGAGATACAGATGGGAGGA-AATAGGAGGGGATGAATTAATGGTGTTTCCAAGA 1382
Query 1484 GTTTCTGCACCAAAAGGATACCATCTTAAG-TGTTCACCTTACT 1526
|||| |||||||||||| | |||||||| | | |||||| ||||
Sbjct 1383 GTTTTTGCACCAAAAGGCTTCCATCTTAGGAT-TTCACCCTACT 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5