BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30300.1
Length=2486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484728 jgi|Araly1|484728|fgenesh2_kg.5__720__AT3G30300.1 3661 0.0
> Ahg484728 jgi|Araly1|484728|fgenesh2_kg.5__720__AT3G30300.1
Length=2368
Score = 3661 bits (1982), Expect = 0.0
Identities = 2255/2386 (95%), Gaps = 21/2386 (1%)
Strand=Plus/Plus
Query 101 CACCGATCTACTTCTCCAGACATGTTCTCACACGTGtctcttctctctctctctctctTC 160
|||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||
Sbjct 1 CACCGATCTACTTCACCAGACATGTTCTCACACGTG--TC-TC-CTCTCTCTCTCTCTTC 56
Query 161 CGATTCAACTTTTCTTCTACTCTCACTTTAGTCTCTGTTATGTCCTCCATTAGCAAAAGA 220
||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 57 CGATTCAACTTTTCTTCTA--CTCACTCTAGTCTCTGTTATGTCCTCCATTAGTAAAAGA 114
Query 221 ACCACTTCACTTCACTTCACTTTCACATCTTGAAGTAGAGATGAAGGGAGAAGGTAAAGT 280
|||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 115 ACCAATTCACTTCAGTTCACTTTCACATC-T---GTAGAGATGAAGGGAGAAGGTAAAGT 170
Query 281 CTTCTTGAAGTCGCGTATGAAATGGATTGGtcttcttggtct-tgttctctctgctttct 339
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 171 CTTCTTGAAGTCGCGTATGAAATGGATTGGTCTTCTTGGTCTCT-TTCTGTCTGCTTTCT 229
Query 340 ctcttcttgtccattttcttctcGCTGGATTCACAGATGACTCAATCTCCGATTACTCTA 399
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 230 CTCTTCTTGTCCATTTTCTTCTCGCCGGATTCACAGATGACTCAATCTCCGATTACTCTA 289
Query 400 TCCCTGTCACTATCTTCTCTTGGAGACCTA-TCTTCGACAATCCCAGATTTGCCCGTCAT 458
| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 290 TTCCTGTTACTATCTTCTCTTGGAGACC-AGTCTTCGACAATCCCAGATTTGCCCGACAT 348
Query 459 ACACCATTGTATAGAAGACTTTGGGGACCAACAAGACATGTAGAGACATTACTTCCTGAT 518
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 349 ACACCATTGTATCGAAGACTTTGGGGACCAACAAGACATGTGGAGACATTACTTCCTGAT 408
Query 519 GCTAATCCTAGAGGTTTTCATTCAGATCCTCCTGCAAGGACAAATGGTTTTGTTTTTGTT 578
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 409 GCTAATCCTAGAGGTTTCCATTCAGATCCTCCGGCAAGGACAAACGGTTTTGTTTTTGTT 468
Query 579 AGAATACAAGGTGGTTTCCATGAGATTAGAAACTCGATTCCTGATGTTGTAGCTGTGTCT 638
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 469 AGAATACAAGGTGGTTTCCATGAGATTAGAAATTCGATTCCTGATGTTGTAGCAGTTTCT 528
Query 639 CGGCTTCTTAACGCCACTTTGGTGATTCCTGAGATACAATCAACAACTAGTAGCAAAGGG 698
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 529 CGGCTTCTTAACGCCACTTTGGTGATTCCTGAGATTCAATCAACAACTAGCAGCAAAGGG 588
Query 699 ATTAGTTCACAGTTCAAGAGCTTTGCGTATTTGTACAATGAAGAACACTTCATGGCTACA 758
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 589 ATTAGTTCACAGTTCAAGAGCTTTGCGTATTTGTACAACGAAGAACACTTCATGTCTTCA 648
Query 759 ATTGCAAATGATGTTAGAGTTGTTAAAACTCTTCCCAAGAATCTCAAATGGGCTAGAAGA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATTGCAAATGATGTTAGAGTTGTTAAAACTCTTCCCAAGAATCTCAAATGGGCTAGAAGA 708
Query 819 AAGAAACAGATTCCTTCTTTTAAAGTCTCTTACGGATCTTCACCTTATTACTACTTACAT 878
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 709 AAGAAACAAATTCCTTCTTTTAAAGTCTCTTACGGATCTTCGCCTTATTACTACTTGCAT 768
Query 879 CATGTTCTACCTGTTCTTATTAAACACTCGGTCGTTGAACTAGTTGTCCCGCACGGTGGA 938
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct 769 CATGTTCTACCTGTTCTCATTAAGCACTCGGTTGTTGAACTCGTTGTCCCTCACGGTGGA 828
Query 939 TGCTTACAAGCTATACTTCCTAGTGATCTTGAAGAATATCAGAGGTTACGGTGTAGAGTT 998
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 829 TGCTTACAAGCTATACTTCCAAGTGATCTTGAAGAATATCAGAGATTACGGTGTAGAGTT 888
Query 999 GC-TTTCCACGGTTTACAATTTAGGAAAGAGGTTCAAGAACTTTCCACTAAAGTATTACA 1057
|| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 889 GCGTTT-CACGCCTTACAATTTAGGAAAGAGGTTCAAGAACTTTCCACTAAAGTATTGCA 947
Query 1058 AAGGCTGAGACCGTTAGGACGACCTTTCATAGCTTATGATCCAGGGATGACAAGAGAAGC 1117
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 948 AAGGCTGAGACCTTTAGGACGACCTTTCATAGCCTATGATCCAGGGATGACAAGAGAAGC 1007
Query 1118 TTTGGCCTATCATGGTTGTGCTGAACTGTTCCAGGATGTTCATACCGAGCTGATTCAACA 1177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TTTGGCCTACCATGGTTGTGCTGAACTGTTCCAGGATGTTCATACCGAGCTGATTCAACA 1067
Query 1178 TAAACGAGCTTGGATGATAAAACGTGGTATTGTCAAAGGGAAGCTCTCTGTAGACTCAGC 1237
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1068 TAAACGAGCTTGGATGATAAAACGTGGGATTGTCAAAGGGAAGCTCTCTGTAGACTCAAC 1127
Query 1238 CGAGCAACGCCTCGCGGGGTTATGTCCTCTTATGCCAGAAGAAGTTGGTATTCTTTTACG 1297
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| || |
Sbjct 1128 CGAGCAACGCCTTGCGGGCTTATGTCCTCTAATGCCAGAAGAAGTTGGTATTCTTCTAAG 1187
Query 1298 AGCTTATGGATACTCATGGGATACAATCATATATGTCGCTGGGGGAGAGGTTTTTGGTGG 1357
||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1188 AGCTTATGGATACGCATGGGACACAATCATATATGTCGCTGGAGGAGAGGTTTTTGGCGG 1247
Query 1358 GCAGAGAACGTTAATTCCTTTACATGGTATGTTTGAGAATGTCGTTGACCGTACTTCTCT 1417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1248 GCAGAGAACGTTAATTCCTTTACATGGCATGTTTGAGAATGTCGTTGACCGTACTTCTCT 1307
Query 1418 AAGTACTAGCTGGGAGCTTGCTAAAATGTATGGGCGTGAGGCAAAGCATAATGATATCAA 1477
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1308 TAGTACTAGCTGGGAGCTTGCTAAGATGTATGGGCGTGAGGCAAAACATAATGATATCAA 1367
Query 1478 GAAAATGACACCTCCTTCGATCGAGGTAGAAACGAAACATGATTCATTGAAAAGCACAAG 1537
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1368 GAAAATGACACCTCCTTCGATTGAGGAAGAAACGAAACATGATTCATTGAAAAGCACAAG 1427
Query 1538 ACAAAGACCTCAACCGCTTCCACCTCCACCAGCTAGACCAAAGTACTACAACATCGAAGG 1597
|||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 1428 ACAAAGGCCTCAACCACTTCCGCCTCCACCGGCTAGACCAAAGTACTACAACATTGAAGG 1487
Query 1598 TTGGTGGGGTTGGGTAGCCGAGAGTGACAACGAGCCCGAAAGCACGGTTATTGAGTTGAG 1657
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1488 TTGGTGGGGTTGGGTAGCTGAGAGTGACAATGAGCCCGAAAGCACGGTTATTGAGCTGAG 1547
Query 1658 AACTAATGCCCATAAGTTGTTGTGGGAAGCGATAGATTACGTTGTTAGCGTGGAAGCAGA 1717
||||||||| || ||| ||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1548 AACTAATGCTCACAAGCTGTTGTGGGAAGCAATTGATTATGTTGTTAGCGTGGAAGCAGA 1607
Query 1718 TGTGTTTATCTCGGGTTTTGATCGCGATGGGAAAGGACATCCGAGTTTCGCTAGTTTGGT 1777
||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1608 TGTATTTATCTCGGGATTTGATCACGATGGGAAAGGACATCCGAGTTTTGCTAGTTTGGT 1667
Query 1778 CATGGGACACCGGCTTTATCAGTCTGCTTCTGCTAAAACATTTAGACCAGACAGGAAACA 1837
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1668 GATGGGTCACCGGCTTTATCAGTCTGCTTCTGCTAAGACATTTAGACCAGACAGGAAACA 1727
Query 1838 AATTGCAATGCTTTTGGAAGAGATTCGAGACCATATGTACGAGGCGAATCACACTTGGAT 1897
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1728 AATTGCAATGCTTTTGGAAGAGATCCGAGACCATATGTACGAGGCGAATCACACTTGGAT 1787
Query 1898 AACATCAGTTAGGAAGCTACTAAAGAGAAGCATACTCGAGGGTCTAATGGAATCTTCCAA 1957
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1788 AACATCAGTTAGGAAGCTACTCAAGAGAAGCATACTCGAGGGTCTAATCGAATCTTCTAA 1847
Query 1958 AAGATCAAAAGCATTTAGTTTTCTTTCCCATCCTGTACCCGAATGTTCTTGCATTACGCG 2017
|| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1848 AAAATCAAAAGCCTTTAGTTTTCTTTCGCATCCTGTACCCGAATGTTCTTGCATAACGCG 1907
Query 2018 AACCCATCCGGTTTCAAATGCCACAAATCTTGGGGTGACACACCGTTGTCCGCAATGGGT 2077
|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |
Sbjct 1908 GGCCCATCCGGTTTCAAACGCCTCAAATCTTGGAGTGACACACCGTTGTCCGCAATGGAT 1967
Query 2078 GGATGGTGCTGTAAGCGAAAGATTAAAGGAGTATAAGAACGCAGAGAAAGAAGAGGATCT 2137
|||||| ||||| | |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1968 GGATGGCATTGTAAACAAAAGATCAAAGGATTATAAGAACGCAGAGAAAGAAGAGGATCT 2027
Query 2138 TGATGAAGAGGACTTGTCTTCTTCAGGATTGTTCTTTGGTCACAAGGAAAGTGGAGGGAA 2197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 TGATGAAGAGGACTTGTCTTCTTCAGGATTGTTCTTTGGTCACAAGGAAAGTGGAGGGAA 2087
Query 2198 TAATAATGGTAACAATGAGACTGTAAATTCCGAAGCTAACAATAAGGAAGAAGGTCAGCT 2257
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 2088 CAATAATGGTAACAATGAGACTGTAAATTCTGAAGCTAACAACAAGGAAGAAGGCCAGCT 2147
Query 2258 TGAAGATCAAGAAGAACTTGAAGGCAGCGAAAGATAAGGCTTGTGGTTGAAGATGCAACA 2317
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2148 TGAAGATCAAGAAGAGCTTGAAGGTGGCGAAAGATAAGGCTTGTGATTGAAGATGCAACA 2207
Query 2318 ATGAGCAAGTCGCAGATAGATCTAACCTTTTCTCAAAAATAGTTTATAGCCTGGTTATTA 2377
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 ATGAGTAAGTCGCAGGTAGATCTAACCTTTTCTCAAAAATAGTTTATAGCCTGGTTATTA 2267
Query 2378 CTTATTAGGTTGTGTATTAGAATATGTCtttttttttttGATGATCAATTTTACAACAGT 2437
||||||||||||||||||||||| || ||||||||||| | ||||| |||||||||||
Sbjct 2268 CTTATTAGGTTGTGTATTAGAATC-GT-TTTTTTTTTTT-A--ATCAACTTTACAACAGT 2322
Query 2438 TTAGTGATTTTTAAGAACATAATTCTATGGTACTATATATTTTTGT 2483
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323 TTAGTGATTTTTAAGAACATAATTCTATGGTACTATATATTTTTGT 2368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93702002700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5