BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G32980.1 Length=1414 Score E Sequences producing significant alignments: (Bits) Value Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600 1688 0.0 Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1 1055 0.0 Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1 966 0.0 > Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600 Length=1059 Score = 1688 bits (914), Expect = 0.0 Identities = 1009/1056 (96%), Gaps = 2/1056 (0%) Strand=Plus/Plus Query 49 ATGAATTTCTCTTATTCTTCCTTGTCAACTTGGACAACCCTAATGACATTGGGTTGTCTT 108 |||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| Sbjct 1 ATGAATTTCTCTTATTCTTCTTTGTCAACTTTGACAACCCTAATAACATTGGGTTGTCTT 60 Query 109 CTGCTTCATTCATCCATTTCCAGTGCTCAGCTAACCCCAACTTTCTATGACAATACATG- 167 |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 CTGCTTCATTCATCCAATTCCAGTGCTCAGCTAACCCCAACCTTCTATGACAATACATGC 120 Query 168 TCCAAGCGTCTTTACCATCGTACGGGATACCATAGTAAACGAGCTAAGATCGGATCCTCG 227 |||| ||||||||||||||||||| | ||||| ||||||||||||||||| |||||||| Sbjct 121 CCCAA-CGTCTTTACCATCGTACGGAACACCATCGTAAACGAGCTAAGATCAGATCCTCG 179 Query 228 TATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAATGGCTGTGATGC 287 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 TATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGATGC 239 Query 288 ATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGAAAGATGCGGCTCCAAACGC 347 |||||| ||||||||||||||||||||||||| ||| |||||||| || ||||||||||| Sbjct 240 ATCGATTCTGTTAGACAACACAACATCCTTTCAAACTGAGAAAGACGCTGCTCCAAACGC 299 Query 348 AAACTCGGCTCGAGGATTTCCAGTGATCGATAGAATGAAAGCAGCAGTAGAGACAGCATG 407 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 AAACTCGGCTCGAGGATTTCCAGTGATTGATAGAATGAAAGCAGCAGTAGAGACAGCATG 359 Query 408 TCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTT 467 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 360 TCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAATCTGTAAATCT 419 Query 468 GGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAGCATTCTT 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAGCATTCTT 479 Query 528 TGCTCTCGCTAATACAAATCTTCCCGCTCCATTCTTCACTCTCCCACAACTTAAGGCCAG 587 ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 480 TGCTCTCGCTAATGCAAATCTTCCCGCTCCATTTTTCACGCTCCCACAACTTAAGGCTAG 539 Query 588 TTTTCAAAATGTTGGACTTGACCGTCCCTCTGATCTCGTTGCACTCTCTGGTGGTCACAC 647 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 540 CTTTCAAAATGTTGGACTTAACCGTCCCTCTGATCTCGTTGCACTCTCTGGTGGTCACAC 599 Query 648 ATTTGGTAAAAACCAGTGCCAATTTATTATGGATAGACTATACAACTTTAGCAACACTGG 707 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 600 ATTTGGTAAAAACCAATGCCAATTTATTATGGATAGGCTATACAACTTTAGCAACACTGG 659 Query 708 TTTACCCGACCCTACTCTTAATACTACATACCTCCAGACACTTCGTGGACAATGTCCCCG 767 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 660 TTTACCCGACCCTACTCTTAATACTACATACCTCCAGATACTTCGTGGACAATGTCCCCG 719 Query 768 CAATGGTAACCAGACCGTCTTAGTTGATTTCGATCTACGCACACCGACGGTTTTTGACAA 827 |||||||| ||||||||||| || ||||||||| | || |||||||||||||||||||| Sbjct 720 GAATGGTAATCAGACCGTCTTGGTCGATTTCGATTTTCGTACACCGACGGTTTTTGACAA 779 Query 828 TAAATACTATGTGAATCTGAAAGAGCTAAAGGGACTTATCCAGACGGATCAAGAGTTGTT 887 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 TAAATACTATGTGAATCTGAAAGAGCTAAAGGGACTTATCCAGACCGATCAAGAGTTGTT 839 Query 888 TTCCAGCCCTAATGCCACTGACACAATCCCCTTGGTGAGAGAATACGCTGATGGCACTCA 947 ||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| Sbjct 840 TTCCAGCCCTAATGCCACTGACACAGTCCCCTTGGTGAGAGAATATGCCGATGGCACTCA 899 Query 948 AAAATTCTTCAATGCTTTTGTGGAAGCAATGAATAGAATGGGAAACATTACACCTCTCAC 1007 ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 900 AAAATTCTTCAATGCTTTTGTTGAAGCCATGAATAGGATGGGAAACATTACACCTCTCAC 959 Query 1008 TGGAACTCAAGGACAAATCAGACAGAATTGTAGGGTGGTTAACTCCAACTCGCTGCTACA 1067 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 960 TGGAACTCAAGGACAAATCAGACAGAATTGTAGGGTGGTCAACTCCAACTCGCTGCTACA 1019 Query 1068 TGATGTGGTCGAAATCGTTGACTTTGTCAGCTCTAT 1103 ||||||||| ||||| |||||||||||||||||||| Sbjct 1020 TGATGTGGTTGAAATTGTTGACTTTGTCAGCTCTAT 1055 > Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1 Length=1311 Score = 1055 bits (571), Expect = 0.0 Identities = 924/1092 (85%), Gaps = 34/1092 (3%) Strand=Plus/Plus Query 34 TTTCTTCTTAT-AGAAATGAATTTCTCTTATTCTTC--C-TTG-TCAACTTGGACAACCC 88 |||| |||| | | ||||| ||||||||| ||||| | | | || |||||||||||| Sbjct 145 TTTCCTCTT-TCAAAAATGCATTTCTCTTCGTCTTCTACATCGTTC-ACTTGGACAACCA 202 Query 89 TAATGACATTGGGTTGTCTTCTGCTTCATTCATCCATT-TCC-AGTGCTCAGCTAACCCC 146 |||| |||||||| |||||| |||||||||||| | || ||| | |||||| || ||||| Sbjct 203 TAATCACATTGGGATGTCTTTTGCTTCATTCAT-CTTTGTCCTA-TGCTCAACTTACCCC 260 Query 147 AACTTTCTATGACAATACATGTCC-AAGCGTCTTTACCATCGTACGGGATACCATAGTAA 205 || ||||| || | | ||||||| || |||| || ||||||||| || ||||| |||| Sbjct 261 CACCTTCTACGATAGTTCATGTCCTAA-CGTCACTAACATCGTACGAGAAACCATTGTAA 319 Query 206 ACGAGCTAAGATCGGATCCTCGTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACT 265 | ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 320 ATGAGTTAAGGTCGGACCCTCGTATCGCTGCGAGCATCCTTCGTCTTCACTTCCACGACT 379 Query 266 G-TTTCGTCAATG---GCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGA 321 | ||| || |||| ||||||| ||||| ||| ||||||||||||| ||||| |||||| Sbjct 380 GCTTT-GTTAATGTAAGCTGTGACGCATCCATCTTGTTAGACAACACGACATCATTTCGA 438 Query 322 ACAGAGAAAGATGCGGCTCCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATCGATAGA 381 |||||||||||||| | ||||||||| ||||||||||||||||| ||||| |||||| Sbjct 439 ACAGAGAAAGATGCCTTTGGAAACGCAAATTCGGCTCGAGGATTTCCTGTGATTGATAGA 498 Query 382 ATGAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCAGATATACTTACC 441 |||||||| || || |||| ||||| ||||| || ||||| ||||||||||| || ||| Sbjct 499 ATGAAAGCCGCGGTGGAGAGGGCATGCCCAAGAACCGTTTCGTGCGCAGATATGCTCACC 558 Query 442 ATCGCAGCTCAACAAGCTGTAAATTTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGG 501 || |||||||||||| |||| | |||||||||||||||||||||||||||||||||||| Sbjct 559 ATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGA 618 Query 502 AGAAGAGATAGCTTACAAGCATTCTTTGC-TCTCGCTAATACAAATCTTCCC-GCTCCAT 559 || ||||| |||||||||||||| | || |||||||||| ||||||| ||| ||||||| Sbjct 619 AGGAGAGACAGCTTACAAGCATT-TCTGAATCTCGCTAATGCAAATCT-CCCAGCTCCAT 676 Query 560 TCTTCACTCTCCCACAACTTAAGGCCAGTTTTCAAAA-TGTTGGACTTGACCGTCCCTCT 618 ||||||| || ||| | ||||| ||||| || ||||| |||||| || || ||||| ||| Sbjct 677 TCTTCACACTTCCAGAGCTTAAAGCCAGCTT-CAAAAATGTTGGCCTCGATCGTCCTTCT 735 Query 619 GATCTCGTTGCACTCTCTGGTGGTCACACATTTGGTAAAAACCAGTGCCAATTTATTATG 678 ||||| ||||| ||||| ||||||||||||||||||||||| || || || |||||| || Sbjct 736 GATCTTGTTGCTCTCTCCGGTGGTCACACATTTGGTAAAAATCAATGTCAGTTTATTCTG 795 Query 679 GATAGACTATACAACTTT-AGCAACACTGGTTTACCCGACCCTACTCTTAATACTACATA 737 || ||| ||||||| ||| |||||||| ||||||||||||||||| || |||||||| || Sbjct 796 GACAGATTATACAA-TTTCAGCAACACAGGTTTACCCGACCCTACCCTCAATACTACTTA 854 Query 738 CCTCCAGACACTTCGTGGACAATGTCCCCGCAATGGTAACCAGACCGT-C-TTAGTTGAT 795 |||||| || |||||||||| ||| |||| ||||| || | || || | || || ||| Sbjct 855 CCTCCAAACTCTTCGTGGACTATGCCCCCTTAATGGCAATC-GAA-GTGCCTTGGTCGAT 912 Query 796 TTCGATCTACGCACACCGACGGTTTTTGACAATAAATACTATGTGAATCTGAAAGAGCTA 855 || |||||||| || || || ||||| ||||| |||||||| |||||||| ||||||||| Sbjct 913 TTTGATCTACGTACGCCTACAGTTTTCGACAACAAATACTACGTGAATCTCAAAGAGCTA 972 Query 856 AAGGGACTTATCCAGA-CGGATCAAGAGTTGTTTTCCAGCCCTAATGCCACTGACACAAT 914 || || |||||||||| || ||||||||||||| || ||||| ||||||||||||||||| Sbjct 973 AAAGGTCTTATCCAGAGCG-ATCAAGAGTTGTTCTCTAGCCCCAATGCCACTGACACAAT 1031 Query 915 CCCCTTGGTGAGAGAATACGCTGATGGCACTCAAAAATTCTTCAATGCTTTTGTGGAAGC 974 |||||||||||||| ||| ||||||||||| |||| |||||||||||| |||||||| || Sbjct 1032 CCCCTTGGTGAGAGCATATGCTGATGGCACACAAACATTCTTCAATGCATTTGTGGAGGC 1091 Query 975 AATGAATAGAATGGGAAACATTACACCT-CTCACTGGAACTCAAGGACAAATCAGACAGA 1033 |||||||| |||||||||||||||||| || || |||||||||||||||||||| || Sbjct 1092 GATGAATAGGATGGGAAACATTACACCTACT-ACAGGAACTCAAGGACAAATCAGGTTGA 1150 Query 1034 ATTGTAGGGTGGTTAACTCCAACTCGCTGCTACATGATGTGGTCGAAATCGTTGACTTTG 1093 ||||||||||||| ||||||||| | ||||| || |||||||| || ||||||||||||| Sbjct 1151 ATTGTAGGGTGGTGAACTCCAACACACTGCTCCAAGATGTGGTGGAGATCGTTGACTTTG 1210 Query 1094 TCAGCTCTATGT 1105 | |||||||||| Sbjct 1211 TTAGCTCTATGT 1222 > Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1 Length=1242 Score = 966 bits (523), Expect = 0.0 Identities = 873/1042 (84%), Gaps = 24/1042 (2%) Strand=Plus/Plus Query 76 ACTTGGACAACCCTAATGACATTGGGTTGTCTTCTGCTTCATTCATC-CATTTCCAG-TG 133 |||||||||| | |||| |||||||| |||||| |||||| | | || | | ||| | || Sbjct 68 ACTTGGACAATCTTAATCACATTGGGATGTCTTATGCTTCGTGCGTCTC-TGTCC-GATG 125 Query 134 CTCAGCTAACCCCAACTTTCTATGACAATACATGTCC-AAGCGTCTTTACCATCGTACGG 192 |||| || ||||| || ||||| |||| | ||||||| || |||| | ||| ||| | Sbjct 126 CTCAACTTACCCCTACCTTCTACGACACTTCATGTCCTAA-CGTCACCAACATTGTAAGA 184 Query 193 GATACCATAGTAAACGAGCTAAGATCGGATCCTCGTATCGCTGCAAGCATCCTTCGTCTT 252 |||||||| || ||||||||||||||||| ||||||||||| | ||||||||||||||| Sbjct 185 GATACCATTGTGAACGAGCTAAGATCGGACCCTCGTATCGCCGGGAGCATCCTTCGTCTT 244 Query 253 CACTTCCACGACTG-TTTCGTCAATGGCTGTGATGCATCGATCCTGTTAGACAACACAAC 311 |||||||||||||| ||| || ||||| ||||| ||||| ||| ||||||||||||| || Sbjct 245 CACTTCCACGACTGCTTT-GTTAATGGTTGTGACGCATCCATCTTGTTAGACAACACGAC 303 Query 312 ATCCTTTC-GAACAGAGAAAGATGCGGCTCC-AAACGCAAACTCGGCTCGAGGATTTCCA 369 ||| |||| || |||||||||||||| || ||||||||| ||||||||||||||||| Sbjct 304 ATCATTTCAGA-CAGAGAAAGATGCG-CTTGGAAACGCAAATTCGGCTCGAGGATTTCCT 361 Query 370 GTGATCGATAGAATGAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCA 429 ||||| |||||||||||||| || ||||||| ||||| ||||| || ||||| |||||| Sbjct 362 GTGATTGATAGAATGAAAGCCGCGGTAGAGAGGGCATGCCCAAGAACCGTTTCGTGCGCA 421 Query 430 GATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGGCAGGAGGTCCTTCTTGGAGG 489 ||||| || ||||| |||||||||||| |||| | ||||||||||||||||||||||| | Sbjct 422 GATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAAG 481 Query 490 GTTCCTTTGGGGAGAAGAGATAGCTTACAAGCATT-CTTTGCTCTCGCTAATACAAATCT 548 |||||||||||||||||||| |||||||||||||| || |||||||||| ||||||| Sbjct 482 GTTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTCTAAA-TCTCGCTAATGCAAATCT 540 Query 549 TCCC-GCTCCATTCTTCACTCTCCCACAACTTAAGGCCAGTTTTCAAAAT-GTTGGACTT 606 ||| |||||||||||||| || ||| | ||||| |||| || ||||| ||||| || Sbjct 541 -CCCAGCTCCATTCTTCACACTTCCAGAGCTTAAAGCCAACTT-CAAAAAAGTTGGCCTC 598 Query 607 GACCGTCCCTCTGATCTCGTTGCACTCTCTGGTGG-TCACACATTTGGTAAAAACCAGTG 665 || ||||| |||||||| ||||| ||||| || || |||||||||||||||||| || || Sbjct 599 GATCGTCCTTCTGATCTTGTTGCTCTCTCCGG-GGCTCACACATTTGGTAAAAATCAATG 657 Query 666 CCAATTTATTATGGATAGACTATACAACTTTAGCAACACTGGTTTACCCGACCCTACTCT 725 | |||||||||||| || ||||||||||||||||||| || ||||| |||||||| || Sbjct 658 TCGATTTATTATGGACCGATTATACAACTTTAGCAACACCGGATTACCTGACCCTACACT 717 Query 726 TAATACTACATACCTCCAGACACTTCGTGGACAATGTCCCCGCAATGGTAACCAGACCGT 785 || || || ||||| || || ||||||||||||||||| ||||||||||| || | || Sbjct 718 CAACACGACTTACCTACAAACTCTTCGTGGACAATGTCCTCGCAATGGTAATCAAAGTGT 777 Query 786 CTTAGTTGATTTCGATCTACGCACACCGACGGTTTTTGACAATAAATACTATGTGAATCT 845 ||||| ||||||||||| || || || ||||| ||||| ||||||||||||||||| Sbjct 778 TTTAGTGGATTTCGATCTGCGTACGCCTTTAGTTTTCGACAACAAATACTATGTGAATCT 837 Query 846 GAAAGAGCTAAAGGGACTTATCCAGA-CGGATCAAGAGTTGTTTTCCAGCCCTAATGCCA 904 ||||||| ||| || |||||||| | || ||||||||||||| || ||||| ||||||| Sbjct 838 CAAAGAGCAAAAAGGTCTTATCCAAAGCG-ATCAAGAGTTGTTCTCTAGCCCCAATGCCA 896 Query 905 CTGACACAATCCCCTTGGTGAGAGAATACGCTGATGGCACTCAAAAATTCTTCAATGCTT 964 | ||||| ||||||||||||||| || ||||||||||| |||||||||| |||| | Sbjct 897 CAGACACGATCCCCTTGGTGAGATCATTTGCTGATGGCACAGAAAAATTCTTTGATGCGT 956 Query 965 TTGTGGAAGCAATGAATAGAATGGGAAACATTACACCT-CTCACTGGAACTCAAGGACAA 1023 ||||||| ||||||||||| |||||||||||||||||| || || ||| ||||||||||| Sbjct 957 TTGTGGAGGCAATGAATAGGATGGGAAACATTACACCTACT-ACAGGATCTCAAGGACAA 1015 Query 1024 ATCAGACAGAATTGTAGGGTGGTTAACTCCAACTCGCTGCTACATGATGTGGTCGAAATC 1083 ||||| ||||||||| ||||| ||||||||||| || || ||||||||||| || || Sbjct 1016 ATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTCTACTCCATGATGTGGTGGAGATA 1075 Query 1084 GTTGACTTTGTCAGCTCTATGT 1105 ||||||||||| |||||||||| Sbjct 1076 GTTGACTTTGTAAGCTCTATGT 1097 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52869260060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5