BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G41979.1 Length=164 Score E Sequences producing significant alignments: (Bits) Value Ahg931988 jgi|Araly1|931988|scaffold_304445.1 298 8e-81 > Ahg931988 jgi|Araly1|931988|scaffold_304445.1 Length=1116 Score = 298 bits (161), Expect = 8e-81 Identities = 161/161 (100%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 4 ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA 60 Query 64 TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC 120 Query 124 CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA 164 ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA 161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 5384544801 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5