BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G42670.1 Length=3879 Score E Sequences producing significant alignments: (Bits) Value Ahg484766 jgi|Araly1|484766|fgenesh2_kg.5__758__AT3G42670.1 6095 0.0 Ahg351139 jgi|Araly1|351139|fgenesh1_pg.C_scaffold_6001732 1995 0.0 > Ahg484766 jgi|Araly1|484766|fgenesh2_kg.5__758__AT3G42670.1 Length=3873 Score = 6095 bits (3300), Expect = 0.0 Identities = 3692/3884 (95%), Gaps = 16/3884 (0%) Strand=Plus/Plus Query 1 ATGAAGAGAAAGCATTACTTTGAGTTTAACCATCCATTTAATCCATGTCCTTTCGAGGTG 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGAAGAGAAAGCATTACTTTGAGTTTAATCATCCATTTAATCCATGTCCTTTCGAGGTG 60 Query 61 TTCTGCTGGGGGACATGGAAGGCCGTGGAGTACTTAAGGATCGAGAATGGAACGATGACA 120 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 TTCTGCTGGGGGACATGGAAGGCCGTGGAGTACTTAAGAATCGAGAATGGAACGATGACG 120 Query 121 ATGCGTCTCTTAGAAAATGGACAAGTTTTGGATGATATAAAACCATTTCAGAGGCTTCGA 180 ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 121 ATGCGTCTCTTGGAAAATGGACAAGTATTGGATGATATAAGACCATTTCAGAGGCTTCGT 180 Query 181 ATTAGATCAAGAAAGGCGACTTTGATCGACTGTACTTCTTTTTTAAGACCCGGTATCGAT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTTAGATCAAGAAAGGCGACTTTGATCGACTGTACTTCTTTTTTAAGACCCGGTATCGAT 240 Query 241 GTTTGCGTTCTTTATCAGAGAGATGAAGAGACTCCAGAACCAGTTTGGGTGGATGCAAGG 300 ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 241 GTTTGCGTTCTCTATCAGAAAGATGAAGAGACTCCAGAACCGGTTTGGGTGGATGCAAGG 300 Query 301 GTTTTATCTATAGAGAGGAAGCCTCATGAATCTGAATGCTTGTGTACGTTCCATGTCAGT 360 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 301 ATATTATCTATAGAGAGGAAGCCTCATGAATCTGAATGCTTGTGTACGTTCCATGTCATT 360 Query 361 GTTTATATAGACCAAGGCTGCATTGGTTTGGAGAAGCATAGAATGAATAAAGTTCCGGTA 420 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 GTTTATATAGACCAAGGCTGCATCGGTTTGGAGAAGCATAGAATGAATAAAGTTCCGGTA 420 Query 421 CTCGTGGGACTCAACGAAATCGCCATCCTTCAAAAGTTTTGCAAGGAACAAAGCTTGGAC 480 ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| Sbjct 421 CTCGTGGGACTCAACCAAATCGCCATTCTCCAAAAGTTTTGCAAGGAACAAAGCTTGGAC 480 Query 481 CGTTACTATAGATGGAGATACTCTGAGGACTGTTCTTCGTTGGTGAAAACAAGACTAAAC 540 || ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 481 CGCTACTACAGATGGAGATACTCTGAGGACTGCTCTTCGCTGGTGAAAACAAGACTAAAC 540 Query 541 TTAGGGAAGTTCTTGCCTGATCTTACATGGTTGCTTGTTACATCAGTTTTGAAAAACATT 600 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTGGGGAAGTTCTTGCCTGATCTTACATGGTTGCTTGTTACATCAGTTTTGAAAAACATT 600 Query 601 GTGTTTCAGATTAGAACCGTTCACGAGAAGATGGTTTATCAGATTGTGACGGATGAAGAT 660 ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 GTGTTTCAGATCAGAACAGTTCACGAGAAGATGGTTTATCAGATTGTGACTGATGAAGAT 660 Query 661 TGCGAAGGCTCTAGTAGCTCTTTGAGTGCAATGAACATTACGGTTGAAGACGGTGTTGTC 720 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || Sbjct 661 TGCGAAGGCTCTAGTAGCTCTTTGAGTGCAATGAACATCACGGTCGAAGACGGTGTTTTC 720 Query 721 ATGTCTAAGGTTGTTTTGTTCAATCCAGCTGAGGATACTTGTCAAGATAGTGATGTAAAG 780 ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 721 ATGTCTAAGGTGGTTTTGTTCAATCCAGCTGAGGATACTTATGAAGATAGTGATGTAAAG 780 Query 781 GAGGAGATTGAAGAGGAGGTAATGGAGCTGCGTCGGTCCAAGAGAAGAAGCGGGCGGCCT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 781 GAGGAGATTGAAGAGGAGGTAATGGAGCTGCGTCGGTCCAAGAGAAGAAGCGGGCGACCT 840 Query 841 GAGAGATACGGAGACTCTGAGATTCAGCCGGATTCGAAGGATGGATGGGTAAGGATGATG 900 ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 841 GAGAGATACGGGGACTCTGAGATTCAGCCAGATTCAAAGGATGGATGGGTAAGGATGATG 900 Query 901 CCATATAGGTACAACATATGGAATGTTTCAAGtgatgatgatgatgaagaagaagattgc 960 ||||||||||||| | ||||| ||||||||||||||| ||||| |||| | || |||| Sbjct 901 CCATATAGGTACAGTACATGGACTGTTTCAAGTGATGACGATGACGAAG-A-AA-ATTGT 957 Query 961 gaggatgataaagatactgatgatgatTTATACTTACCGTTATCGCATTTACTTAGAAAG 1020 || ||||||| |||||| ||||| |||||||||||||||||||||||||||||| | ||| Sbjct 958 GATGATGATAGAGATACCGATGACGATTTATACTTACCGTTATCGCATTTACTT-GGAAG 1016 Query 1021 -AAAGGAAGCAAAAAGGGATTTAGTAAGGATAAGCAGAGAGAGATAGTTTTGGTAGACAA 1079 |||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||| Sbjct 1017 AAAAGGAAGCACAAAGGGATTAAGTAAGGATAAGCAAAGAGAGATTGTTTTGGTAGACAA 1076 Query 1080 AACTGAGAGGAAGAAGAGAAAGAAAACAGAGGGATTTAGTCGAAGTTGTGAGCTTTCGGT 1139 |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1077 AACTGAAAGGAAGAAGAGAAAGAAAACAGAGGGATTTGGTCGAAATTGTGAGCTTTCGGT 1136 Query 1140 TATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGTCTCAATGCAAA 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGTCTCAATGCAAA 1196 Query 1200 TAGTTTGTGTGGTGGTGTCTCTGGAA---ATTTGATGGATGAGATCGATAAGTATCGTAG 1256 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1197 TAGTTTGTGTGGTGGTTTCTCTGGAAGTCATTTGATGGATGAGATCGATAAGTATCGTAG 1256 Query 1257 TAAAGCAGCGAAATACGGgaagaagaagaagaagaagaTT-GAAATGGAAGAGATGGAAT 1315 |||||||||||||||| | | ||||||||||||| || ||||||||||||||||||| Sbjct 1257 TAAAGCAGCGAAATAC--G--G--GAAGAAGAAGAAG-TTAGAAATGGAAGAGATGGAAT 1309 Query 1316 CTGATCTAGGTTGGAATGGACCTATTGGGAATGTGGTTCATAAAAGAAATGGACCGCATT 1375 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1310 CTGATCTAGGTTGGAATGGACCCATTGGCAATGTGGTTCATAAAAGAAATGGACCGCATT 1369 Query 1376 CTCGAATAAGGTCCGTTTCTAGGGAAACCGGAGTTTCTGAGGAACCGCAGATTTATAAGA 1435 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 CCCGAATAAGGTCCGTTTCTAGGGAAACCGGAGTTTCTGAGGAACCGCAGATTTATAAGA 1429 Query 1436 AGAGAACGTTGAGCGCAGGTGCGTATAACAAGTTGATAGACTCGTACATGAGTAGAATTG 1495 ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| Sbjct 1430 AGAGAACGTTGAGCGCAGGCGCGTATAACAAGCTGATCGACTCGTACATGAGTAGAATTG 1489 Query 1496 ATTCTACAATTGCAGCCAAGGACAAAGCAACCAATGTTGTTGAGCAGTGGCAAGGGTTAA 1555 ||||||||||||||||||| || |||||||||||||||||||||||||| | ||| ||| Sbjct 1490 ATTCTACAATTGCAGCCAAAGATGAAGCAACCAATGTTGTTGAGCAGTGGGAGGGGATAA 1549 Query 1556 AGAACCCCGCAAGCTTTTCGATCGAAGCCGAAGAAAGGTTGAGTGAGGAGGAGGAGGATG 1615 ||||| | |||| |||||| || ||||||||||||||||||||||| ||||| || |||| Sbjct 1550 AGAACACTGCAACCTTTTCTATAGAAGCCGAAGAAAGGTTGAGTGACGAGGATGACGATG 1609 Query 1616 ATGGCGAGACTTCAGAGAATGAGATTCTATGGAGGGAAATGGAACTATGCTTGGCTTCTT 1675 | || ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||| Sbjct 1610 ACGGAGAGACGTCAGAGAACGAGATGCTATGGAGGGAAATGGAACTATGTTTGGCTTCTT 1669 Query 1676 CTTACATTCTTGATGACCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAAGCAACCT 1735 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1670 CTTACATTCTTGATGACAATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAAGCAACCG 1729 Query 1736 GTGATTGTGAACATGACTATGAATTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTG 1795 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1730 GTGATTGTGAACATGATTATGAATTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTA 1789 Query 1796 GTCATGTAGGAACTGAGATAAAACATGTTTCTGCACCTTTTGCGCGGCACAAGAAATGGA 1855 ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1790 GTCATGTAGGATCTGAGATAAAACATGTCTCTGCACCTTTTGCGCAGCACAAGAAATGGA 1849 Query 1856 CGACGGAGACTAAGCAAATCAACGAAGATGACATTAATACTACTATAGTTAACCAAGATG 1915 | ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1850 CCACGGAGACTAAGCAAATCAACGAAGATGACATTAATACTACTAAAGTGAACCAAGATG 1909 Query 1916 GAGTTGAGAGCCATACTTTCACTATACCAGTTGCTTCCTCAGATATGCCATCGGCTGAAG 1975 ||||||||| |||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 1910 GAGTTGAGAACCATACTTTCACTATACCAGTTGCTTCCTCCGATATGCCCTCTGCTGAAG 1969 Query 1976 AAAGTGACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA 2035 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1970 AAAGTGACAATGTTTGGTCTCTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA 2029 Query 2036 AAAAAGCTTTTGAGTTTCTCTGGAAGAACCTAGCCGGGTCAGTGGTTCCCGCGATGATGG 2095 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 2030 AAAAAGCTTTTGAGTTTCTCTGGAAGAACTTAGCCGGGTCAGTGATTCCCGCGATGATGG 2089 Query 2096 ATCCGAGTTCAGATAAGATAGGTGGGTGTGTAGTTTCTCATACTCCCGGAGCAGGAAAAA 2155 ||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||| Sbjct 2090 ATCCGAGTTCAGAGAAGATAGGTGGGTGCGTGGTTTCTCATACTCCCGGAGCAGGCAAAA 2149 Query 2156 CATTTCTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTTCCGGGTAAAAGACCTT 2215 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 2150 CATTTCTGATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTTCCGGGTAAAAGGCCAT 2209 Query 2216 TGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGA 2275 |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| Sbjct 2210 TGGTTCTTGCTCCAAAAACAACGTTGTACACATGGTATAAGGAGTTCATCAAATGGGAGA 2269 Query 2276 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAGAGAAGA 2335 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 2270 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTGTGTCCAAAGAGAACA 2329 Query 2336 CCATTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGACTGTT 2395 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2330 CCATTCAGTTCAAGGGAATTCCAAAACCGAGCCAAGATGTTATGCATGTTCTTGACTGTT 2389 Query 2396 TAGACAAAATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACACATCGT 2455 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2390 TAGACAAAATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTGATGGGTTACACATCGT 2449 Query 2456 TTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAAAGTAC 2515 | ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 2450 TCCTAACATTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAATACATGGCCAAAGTAC 2509 Query 2516 TGAGAGAGTCTCCTGGATTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTACCAAGT 2575 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | Sbjct 2510 TGAGAGAGTCTCCTGGATTACTAGTTTTAGACGAGGGACATAACCCGAGGAGTACCAAAT 2569 Query 2576 CGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTTCTGGTA 2635 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 2570 CGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGATTTGAGGATTCTGCTTTCGGGTA 2629 Query 2636 CATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGACCCAAGT 2695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2630 CATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGACCCAAGT 2689 Query 2696 TTGTTCATGAGGTTCTAGTGGAGTTGGACAAGAAGTTCCAGACCAACCAAGCCGAGCAAA 2755 |||||||||||||||| |||||||||||| |||||||||||||||||||||| | | ||| Sbjct 2690 TTGTTCATGAGGTTCTTGTGGAGTTGGACCAGAAGTTCCAGACCAACCAAGCTGTGGAAA 2749 Query 2756 AGGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTATAGCCAAGA 2815 |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 2750 AGGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAATTCTTCCTCGACATTATTGCCAAGA 2809 Query 2816 AGATTGACACAAAAGTGGGCGATGAGCGCTTGCAGGGTCTCAACATGTTGAGGAATATGA 2875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2810 AGATTGACACAAAAGTGGGCGATGAGCGCTTGCAGGGTCTCAACATGTTGAGGAATATGA 2869 Query 2876 CGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGATGTTCTCCCAG 2935 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2870 CCAGTGGTTTCATCGATAACTATGAAGGGAGCGGAAGCGGAAGTGGTGATGTTCTCCCAG 2929 Query 2936 GTTTGCAGATTTACACATTGTTGATGAATTCCACTGATGTACAGCACAAGAGTCTTACCA 2995 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2930 GTTTGCAGATTTACACATTGTTGATGAATTCAACTGATGTACAGCACAAGAGTCTTACCA 2989 Query 2996 AACTTCAGAACATAATGTCAACTTACCATGGATATCCACTCGAGCTCGAGTTACTCATAA 3055 |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 2990 AACTTCAGAATATAATGTCGACTTACCATGGATATCCACTCGAGCTTGAGTTACTCATAA 3049 Query 3056 CGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGTTGCGCCAAATTCTTCA 3115 ||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||||| Sbjct 3050 CGTTAGCAGCTATCCATCCTTGGTTGGTCAAAACCACTACATGTTGCACCAAATTCTTCA 3109 Query 3116 ACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCAAAGAAAGGATCAAAAG 3175 | ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 3110 ATCCTGAGGAGCTTTTCGAGATTGAGAAGCTCAAGCATGATGCAAAGAAAGGATCAAAAG 3169 Query 3176 TCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAGAAAATCCTCATATTTT 3235 |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct 3170 TCATGTTTGTGCTTAACCTAGTGTTCCGGGTGGTCAAGAGGGAGAAAATCCTCATCTTTT 3229 Query 3236 GTCACAACATTGCGCCGATCCGCCTGTTTCTTGAGCTGTTCGAGAATGTATTCAGGTGGA 3295 | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 3230 GCCACAACATTGCGCCGATCCGCCTGTTTCTTGAGCTGTTTGAGAATGTTTTCAGGTGGC 3289 Query 3296 AGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGCTGTTTGAAAGAGGCAGAG 3355 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3290 AGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGCTGTTTGAGAGAGGCAGAG 3349 Query 3356 TAATAGACAAATTTGAAGAGCCAGGAGGCCAGTCCCGTGTTCTGCTGGCTTCGATTACAG 3415 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 3350 TGATAGACAAATTTGAAGAACCAGGAGGCCAGTCCCGTGTTCTGCTGGCTTCGATCACAG 3409 Query 3416 CCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGTGATCATGCTTGATTCAGAGT 3475 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 3410 CCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCCCGGGTGATCATGCTTGATTCGGAGT 3469 Query 3476 GGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATTCAGACCGGGACAGCAGAAAG 3535 |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct 3470 GGAATCCTTCTAAGACTAAGCAAGCAATCGCACGTGCGTTCAGACCAGGACAGCAGAAAG 3529 Query 3536 TGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTTGAAGAAGACAAATACAGGAGGA 3595 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 3530 TGGTGTACGTTTACCAGCTCTTGTCCAGAGGAACACTTGAGGAAGACAAATACAGGAGGA 3589 Query 3596 CGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTGAAGAATTTGTGGAGGACCCAT 3655 ||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 3590 CGACCTGGAAAGAGTGGGTGTCAAGTATGATTTTCAGCGAAGAATTTGTGGAGGACCCAT 3649 Query 3656 CTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTAGAGAAATCGTGGAGGAAGACA 3715 | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3650 CACAGTGGCAAGCTGAGAAGATCGAGGACGATGTTCTTAGAGAAATCGTGGAGGAAGACA 3709 Query 3716 AAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAAGCTTCAACAGGTGGCTGATTGC 3775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3710 AAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAAGCTTCAACAGGTGGCTGATTGC 3769 Query 3776 TGAATTTTTCCAGTTCAAGTTTCTGTTTCACCATGCCTTTGATGATGATTCTTTAACAGC 3835 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3770 TGAAGTTTTACAGTTCAAGTTTCTGTTTCACCATGCCTTTGATGATGATTCTTTAACAGC 3829 Query 3836 TTGTTGTATTGTAATATAAACTAATCCTGTATCATAAGTTTGTG 3879 ||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 3830 TTGTTGTATTGTAATATAAACTAATCCGGTATCACAAGTTTGTG 3873 > Ahg351139 jgi|Araly1|351139|fgenesh1_pg.C_scaffold_6001732 Length=3783 Score = 1995 bits (1080), Expect = 0.0 Identities = 2192/2711 (81%), Gaps = 147/2711 (5%) Strand=Plus/Plus Query 1129 GAGCTTTCGGTTATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGT 1188 |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1141 GAGCTTTCGGTTATTCCTTTCACTCCAGTATTTGAGCCTATACCGTTGGAACAGTTTGGT 1200 Query 1189 CTCAATGC-AAATAGTTT--GT-GTGGT-G--GTGTCTCTGGAA---ATTTGATGGATGA 1238 || ||||| || | |||| || | ||| | || | || ||| | | | ||||| Sbjct 1201 CTTAATGCTAACT-GTTTGGGTGGGGGTGGCAGTTTTTCAAGAAGCCAGTACTTTGATGA 1259 Query 1239 GATCGATAAGTATCGTAGTAAAGCAGCGAAATACGGgaagaagaagaaga-agaagaTTG 1297 ||| || |||||||| |||||| | |||||||||||||| | || | || |||| | || Sbjct 1260 GATTGAAAAGTATCGAAGTAAATCCTCGAAATACGGGAAG-A-AA-ATGACAGAA-A-TG 1314 Query 1298 AAATGGAAGA-GATGGAATCTGATCTAGGTTGGAATGGACCT-A-T-TGGGAATGT-GGT 1352 || | ||| |||||||||||||||| ||||||| || ||| | | | ||| || ||| Sbjct 1315 GAA--G-AGATGATGGAATCTGATCTATGTTGGAAAGGTCCTAACTACGTGAA-GTCGGT 1370 Query 1353 TCATAAAA-GAAATGGACCGC-ATTC-TCGAATAAGGTCCGTTT-CTAGGGAAACCGGA- 1407 ||| |||| | || ||| | | | ||| ||| | ||| || ||| | || Sbjct 1371 TCA-AAAACG-AA--CACCCCGA-CCTTCG----CGGT-CATTTGCT-CCAAAAACAGAG 1419 Query 1408 GTTTCTGAGGAACCGCAGATTTATAAGAAGAG-AACGTTGAGCGCAGGTGCGTATAACAA 1466 | ||| || ||||| | | | |||||||| || ||| ||||| |||||||| |||||||| Sbjct 1420 GATTCCGATGAACCACGGGTCTATAAGAA-AGTAACATTGAGTGCAGGTGCATATAACAA 1478 Query 1467 GTTGATAGACTCGTACATGAGTAGA-ATTGATTCTACAATTGCAGCCAAGGACAAAG-CA 1524 | ||||||| || ||||||| | | ||||| || |||||| ||||||||||| || | Sbjct 1479 GCTGATAGATTCATACATGAACA-ACATTGAGTCCACAATTTCAGCCAAGGAC-GAGCCT 1536 Query 1525 ACCAATGTTGTTGAGCAGTGGCAAGG-GTTAAAGAACCCCGCAAGCTTTTCG-ATCGAAG 1582 |||||||||||||| |||||| ||| ||||||||| || || ||||| || || Sbjct 1537 ACCAATGTTGTTGACCAGTGG-GAGGAGTTAAAGAA-GACG-AA---TTTCGCATTTAAA 1590 Query 1583 CCG-A-A--GA-AAGG---TTGAGTGAGGAG-GAGGA-GGATGATGGCGAGACTTCAGAG 1632 | | | | || | || | | | || ||||| || ||| || |||||||||||| Sbjct 1591 CTGCATAGGGATATGGAACAAAACTTA--AGTGAGGATGG-TGAGGGAGAGACTTCAGAG 1647 Query 1633 AATGAGAT-TCTATGGAGGGAAATGGAACTATGCTTGGCTTCTTCTTACATTCTTGATGA 1691 || || || | ||||||| ||||||||||| |||||||||||||||||||| || ||||| Sbjct 1648 AACGAAATGT-TATGGAGAGAAATGGAACTCTGCTTGGCTTCTTCTTACATACTCGATGA 1706 Query 1692 CCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAA-GCAACCTGTGATTGTGAACATG 1750 | | |||| |||||||| |||||||| || | ||| || | ||| ||||||||| | Sbjct 1707 CAACGAGGCAAGAGTGGACAACGAGGCTTTAGA-AAAGGCGAGAAGTGGTTGTGAACACG 1765 Query 1751 ACTATGAA-TTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTGGTCATGTAGGAACT 1809 | ||| || || | ||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 1766 ATTAT-AAGCTGGACGAAGAAATCGGGATGTGTTGCAGGTTATGTGGTCATGTAGGAACT 1824 Query 1810 GAGATAAAACATGTTTCTGCACCTTTTGCGCG-GCACAAGAAATGGACGACGGAGACTAA 1868 ||||||||| |||| |||||||| ||||| | || ||||||||||| | ||| ||||| Sbjct 1825 GAGATAAAAGATGTATCTGCACCATTTGC-AGAACATAAGAAATGGACAATGGACACTAA 1883 Query 1869 GCAAATC-AACGAAGATGACATTAATACTACTATAGTT-AACCA-AGATGGAGTTGAGAG 1925 ||| || || |||||||||| ||| | |||| |||| | ||| | | | || |||| Sbjct 1884 GCAGCTCGAA-GAAGATGACA-TAA-A-GACTA-AGTTGAGCCACA-AAGAAGGCGAGA- 1936 Query 1926 C--CATACTTTCACTAT-ACCAGTTGCTTCCTCAG-ATATGCCAT-CGGCTGAAGAAAGT 1980 | | | ||||||||| | || || ||| || | | ||| | | | |||||||||||| Sbjct 1937 CTGAAGA-TTTCACTATGTCAAG-TGATTCTTC-GAAAATG-CTTGCCGCTGAAGAAAGT 1992 Query 1981 GACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA-AAAA 2039 || || || ||| | |||||||||||||||||||||||||| ||| |||| || | || Sbjct 1993 GAAAACGTTTGGGCATTAATACCTCAGCTTAAGAGAAAACTACATATGCATCA-ACGAAG 2051 Query 2040 AGCTTTTGAGTTTCTCTGGAAG-AACCTAGCCGGGTCAGTGGTTCCCGCGATGATGGATC 2098 ||||||||||||||||||| || || ||||| || || |||| ||| || | ||||||| Sbjct 2052 AGCTTTTGAGTTTCTCTGG-AGAAATCTAGCAGGATCTGTGGAACCCTCGCTTATGGATC 2110 Query 2099 CGAGTTCAGATAAGATAGGTGGGTGTGTAG-TTTCTCATACTCCCGGAGCAGGAAAAACA 2157 | | ||||||||| |||||||| ||||| | | |||||| |||| ||||| || ||||| Sbjct 2111 CCACTTCAGATAACATAGGTGGTTGTGT-GATCTCTCATTCTCCAGGAGCTGGTAAAAC- 2168 Query 2158 TTT-CTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTT-CCGGGTAAAAGACCTT 2215 ||| ||||| || ||||| ||| | |||||||||||| ||||| ||||| |||||||| | Sbjct 2169 TTTCCTAATAATCGCTTTCCTCACTAGCTACTTGAAGCTATTTCCCGGG-AAAAGACCCT 2227 Query 2216 TGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGA 2275 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2228 TGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAGTTCATCAAATGGGAGA 2287 Query 2276 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAG-AGAAG 2334 | || || || ||||| ||| |||| ||||| ||||||||||||| | ||| | |||| Sbjct 2288 TCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTACTGTACCTTCAA-GCAGAAC 2346 Query 2335 A-C-CA-TTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGAC 2391 | | || |||||||| | ||| |||| ||||| |||||||||||||||||||||||||| Sbjct 2347 AGCACAATTCAGTTCAATGGAGTTCCGAAACCGAGCCAAGATGTTATGCATGTTCTTGAT 2406 Query 2392 TGTTTAGACAAA-ATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACAC 2450 || ||||| ||| || ||||||||||| || || |||||||||||||||||||||||||| Sbjct 2407 TGCTTAGA-AAAGATACAGAAATGGCACGCGCATCCGAGTGTTCTTGTAATGGGTTACAC 2465 Query 2451 ATCGTTTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAA 2510 |||||||| ||||||||||||||||| || ||||||||| || |||||||||||||||| Sbjct 2466 CTCGTTTCTGACTTTGATGAGGGAAGACTCGAAGTTTGCTTATCGAAAGTACATGGCTAA 2525 Query 2511 AGTACTGAGAGAGTCTCCTGGA-TTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTA 2569 ||| || |||||| |||||| || || ||||| || || ||||||||||| ||||||| Sbjct 2526 AGTGCTAAGAGAGAGTCCTGGGCTT-CTTGTTCTTGATGAAGGACATAACCCAAGGAGTA 2584 Query 2570 CCAAGTCGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTT 2629 |||||||| ||||||| ||||||||||||||||||| ||||||||| ||||| || |||| Sbjct 2585 CCAAGTCGCGATTACGCAAGGCCTTGATGAAAGTTGGTACTGACTTAAGGATACTTCTTT 2644 Query 2630 CTGGTACATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGAC 2689 | ||||| |||||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 2645 CGGGTACTTTGTTTCAGAACAACTTCTGCGAGTACTTCAACACGCTGTGTTTGGCTAGAC 2704 Query 2690 CCAAGTTTGTTCATGAGGTTCTAGTGGAGTTGGA-CAAGAAGTTCCAGACCAACCAAGCC 2748 | |||||| |||||||||||||| ||||||| || || ||| ||| ||||||| ||| Sbjct 2705 CAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCA-GAAATTCAAGACCAATCAAA-- 2761 Query 2749 GAGCAAA-A-GGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTA 2806 | | ||| | ||||||||||||||| || ||||||||||| || |||||| | || || | Sbjct 2762 GTGTAAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTCTTCATCGATATAA 2821 Query 2807 TAGCCAAGAAGATTGACACAAAAGTGGGCGATGAGCGC-TTGCAGGGTCTCAACATGTTG 2865 | |||||||||||||| || ||||| ||||| ||| || || |||||||| |||||| Sbjct 2822 TTGCCAAGAAGATTGATGCAGGCGTGGGAGATGAACGCCTT-CAAGGTCTCAATATGTTG 2880 Query 2866 AGGAATATGACGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGAT 2925 | ||| ||||| | | ||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 2881 AAGAACATGACTAATAGTTTCATTGATAACTATGAAGGGAGTGGAAGTGGAAGTGGCGAT 2940 Query 2926 GTTCT-CCCAGGTTTGCAGATTTACACATT-GTTGATGAATTCCACTGATGTACAGCACA 2983 | ||| ||| ||| | || || || ||| | || |||||| || || ||| ||||||| | Sbjct 2941 GCTCTTCCC-GGTCTACAAATCTATACACTAGT-GATGAACTCGACGGATATACAGCATA 2998 Query 2984 AGAGT-CTTACCAAACTTCAGAACATAATGTCA-ACTTACCAT-GGATATCCACTCGAGC 3040 ||| | || || ||||||||| | |||| | ||||| | || |||||||||||| Sbjct 2999 AGA-TACTCACAAAACTTCAGGATGTAATAA-AGACTTATT-TCGGGTATCCACTCGAGG 3055 Query 3041 TCGAG-TTACTCATAACGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGT 3099 ||||| || | ||||| || || ||||| |||||||||||||||| | | ||| |||| Sbjct 3056 TCGAGCTT-CAGATAACATTGGCAGCTATACATCCTTGGTTGGTCACGAGCTCAAACTGT 3114 Query 3100 TGCGCCAAATTCTTCAACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCA 3159 ||| |||||||||||||| || || ||||||||||| || || ||||||||||||||| Sbjct 3115 TGCAAAAAATTCTTCAACCCGCAAGAACTTTTAGAGATCGAAAAACTCAAGCACGATGCA 3174 Query 3160 AAGAAAGGATCAAAAGTCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAG 3219 ||||||||||| ||||||||||||||||| || ||||| | ||| ||||||||||||||| Sbjct 3175 AAGAAAGGATCTAAAGTCATGTTTGTGCTAAACCTTGTCTACCGAGTGGTCAAGAGGGAG 3234 Query 3220 AAAATCCTCATATTTTGTCACAACATTGCGCCGATCCGCCTGTTT-CTTGAGCTGTTCGA 3278 || ||| | || ||||| |||||||||||||| ||||| ||||| | || ||||| || Sbjct 3235 AAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACC-GAACTGTTTGA 3293 Query 3279 GAATGTATTCAGGTGG-AAGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGC 3337 |||||| ||||||||| || |||||| ||||| || ||||||| || || ||||| || | Sbjct 3294 GAATGTTTTCAGGTGGCAA-AGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTTGAAC 3352 Query 3338 TGTTTGAAAGAGGCAGAGTAATAGACAAATTTGAAGAGCCAGGAGGCC-AGTCCCGTGTT 3396 |||| || ||||||||||| ||||||||||||||||| || ||| || | ||||| || Sbjct 3353 TGTTCGAGAGAGGCAGAGTGATAGACAAATTTGAAGAACCTGGAAACCCA-TCCCGAGT- 3410 Query 3397 CTG-CTGGCTTCGATTACAGCCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGT 3455 || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||| Sbjct 3411 CTTACTGGCCTCAATCACAGCTTGCGCAGAAGGGATTAGTCTAACCGCTGCTTCACGGGT 3470 Query 3456 GATCATGCTTGATTCAGAGTGGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATT 3515 |||||||| || || || ||||| ||||| |||||||||||||| || || |||||||| Sbjct 3471 CATCATGCTCGACTCGGAATGGAACCCTTCAAAGACAAAGCAAGCCATAGCTCGTGCATT 3530 Query 3516 CAGACCGGGACAGCAGAAAGTGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTT-G 3574 ||||||||||||||||||||| || || ||||| ||||||||||| ||||||||| || | Sbjct 3531 CAGACCGGGACAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGTCCAGAGGAACA-TTAG 3589 Query 3575 AAGAAGACAAATACAGGAGGACGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTG 3634 | ||||| || ||||||||||| || |||||||| |||||||| |||||||| ||||||| Sbjct 3590 AGGAAGATAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGAGTATGATATTCAGTG 3649 Query 3635 AAGAATTTGTGGAGGACCCATCTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTA 3694 | || ||||| | ||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3650 AGGAGTTTGTTGCGGATCCATCTCTATGGCAAGCTGAGAAGATTGAAGACGATGTTCTTA 3709 Query 3695 GAGAAATCGT-GGAGGAAGACAAAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAA 3753 |||| ||||| |||| |||| ||||| ||||| |||||||||||||||||||| ||||| Sbjct 3710 GAGAGATCGTTGGAG-AAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAAG 3768 Query 3754 GCTTCAACAGG 3764 ||||||||||| Sbjct 3769 GCTTCAACAGG 3779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 146597771196 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5