BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G43110.1 Length=857 Score E Sequences producing significant alignments: (Bits) Value Ahg936924 jgi|Araly1|936924|scaffold_501115.1 830 0.0 Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1 163 2e-39 > Ahg936924 jgi|Araly1|936924|scaffold_501115.1 Length=610 Score = 830 bits (449), Expect = 0.0 Identities = 551/599 (92%), Gaps = 11/599 (2%) Strand=Plus/Plus Query 164 TAATAAAAACA-TTTCAGAAATGGCGACTTTGGATTCTCCGTTAGAGGTTTTGGCTTTCG 222 ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TAACAAAAACATTTTCAGAAATGGCGACTTTGGATTCTCCGTTGGAGGTTTTGGCTTTCG 60 Query 223 ACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATCGCCGTCGTGACGGCCGCCG 282 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 61 ACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATTGCCGTGGTGACGGCCGCCG 120 Query 283 TTAGTTTCTGGCGGATCCGAGCCACTACCACTACCACCACCAGCGGAGGTGGTAGAGACA 342 ||||||||||||| ||||||| ||| || ||||||| | | || || ||||||||| Sbjct 121 TTAGTTTCTGGCGTATCCGAG---CTA-CA--ACCACCAGCGGGGGCGGCGGTAGAGACG 174 Query 343 ATGGCTTAATAGATGAATCTTTTCTTGAGCCACCAAAACCACAAGCGACAAAGGCTGCTC 402 | || || |||||||||||| || ||||||||| ||||||||||| || |||||||||| Sbjct 175 ACGGTTTCATAGATGAATCTCCTCGTGAGCCACCTAAACCACAAGCCACGAAGGCTGCTC 234 Query 403 TCCTTATGGAGACGAAACCTCCTAGAGTCAAGGTAACGGAGACTGAGGATTGGAGTTTGT 462 | || ||||||||||||||| || ||| |||||||||||||| || ||||||||||||| Sbjct 235 TTGTTGTGGAGACGAAACCTCATAAAGTTAAGGTAACGGAGACGGAAGATTGGAGTTTGT 294 Query 463 TGTTGTGTAAGGACGGAGTAACGAAGGGGAAGCTAACCGTGTACTACgaa-gaaga-gat 520 |||||||||| |||||||||||||||||||||||||| ||||||||| || ||| | ||| Sbjct 295 TGTTGTGTAATGACGGAGTAACGAAGGGGAAGCTAACGGTGTACTAC-AAGGAA-ATGAT 352 Query 521 tgacggagagagagaagaagatgacggagagaCAACGGCCGTTAAGTatggaggaggtga 580 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 353 TGACGGAGAGAGAGAAGAAGATGACGGAGAGACAACGGTCGTTAAGTATGGAGGAGGTGA 412 Query 581 gagtggagaatggtgggagagatgggagagagtggtgaagatgagaaatggagatgaaGG 640 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 413 GAGTGGAGAGTGGTGGGAGAGATGGGAGACAGTGGTGAAGATGAGAAATGGAGATGAAGG 472 Query 641 TTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGC 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 TTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGC 532 Query 701 TAACCGTGTACGTAACGGTGGTTGGGTTAGTGTGCAACGTAAGGAGTGTTATGGTTGAG 759 |||| | || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 533 TAACGGAGTCCGTAACGGTGGTTGGGTTAGTGTGCAGCGTAAGGAGTGTTATGGTTGAG 591 > Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1 Length=684 Score = 163 bits (88), Expect = 2e-39 Identities = 102/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 591 tggtgggagagatgggagagagtggtgaagatgagaaatggagatgaaGGTTGGTACCGT 650 |||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||| ||| Sbjct 453 TGGTGGGAGAAATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGT 512 Query 651 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 699 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 513 TACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATG 561 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31718266944 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5