BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43240.1
Length=2642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484793 jgi|Araly1|484793|fgenesh2_kg.5__785__AT3G43240.1 4036 0.0
> Ahg484793 jgi|Araly1|484793|fgenesh2_kg.5__785__AT3G43240.1
Length=2633
Score = 4036 bits (2185), Expect = 0.0
Identities = 2508/2657 (94%), Gaps = 50/2657 (2%)
Strand=Plus/Plus
Query 12 ttgttcttcagattttttctaaattttaatcttttgtgtttgtgatcttttgtGATGGGC 71
|||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 TTGTTCTTCAGA-TTTTTCT-AATTTTAATC--TTGTGTTTGTGATCTTTTGTGATGGGC 56
Query 72 CTCTTCT-CTCTGTTTAGGTTTCTCTTTTTCCAATA-AAATTCGTCTTCTTC-TTTTCTG 128
||| ||| ||| ||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 57 CTC-TCTCCTCCATTTAGGTTTCTCTTTTTCCAATAGAAA-TCGTCTTCTTCTTTTTCTG 114
Query 129 GGTAC-CGTCGATTTCTTC-CTACGAGTTCGAAATTAGGGtttttttCTTCTTCTTAGGG 186
||| | ||||||||||||| ||||||||||||||||| || |||| || || ||||||
Sbjct 115 GGT-CTCGTCGATTTCTTCTCTACGAGTTCGAAATTA-GG---TTTT-TT-TT-TTAGGG 166
Query 187 CTGATTTTGA---GG------TCG--AGTAGTGGGTTCTTAACGAACTTATTCGTTGAA- 234
|||| ||||| || ||| | |||||||||||| ||||||||||||||||||
Sbjct 167 CTGA-TTTGACTCGGATTTATTCGACACTAGTGGGTTCTTGACGAACTTATTCGTTGAAT 225
Query 235 TTTCTTTAGGGTTTTCTTTGTGGTCTAGTT-TCATAGAG-AGATTAGAAGTTTGGTTATG 292
||||||||||| ||||||||||| | ||| || | || | || ||||||||||||||
Sbjct 226 TTTCTTTAGGG-TTTCTTTGTGGAATTGTTCTC-TTTAGTTG-TTTGAAGTTTGGTTATG 282
Query 293 CTATTGAACGATGTTTCATGGACAAGGGTTTTCGAGAAACCGTTGTAATGTTGTGGCAGT 352
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CTATTGAATGATGTTTCATGGACAAGGGTTTTCGAGAAACCGTTGTAATGTTGTGGCAGT 342
Query 353 TGTTTCTGGAGCAGAGCTTTGCGATACTAATAACCAGATAGATGGAACTTCTCATCAAC- 411
||||||| | | |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 343 TGTTTCT-G-G-AGAGCTTTGCGATACTAATAACCAGATAGATGGAGCTCCTCATCAACA 399
Query 412 -CC-AAATACCCTTTTCCAGATCTCTCTTCTTCAGGGCGTCTCAAGTTTCAGGTACTGAA 469
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 400 ACCTAAATACCCTTTTCCAGATCTCTCTTCTTCAGGGAGAGTCAAGTTTCAGGTACTGAA 459
Query 470 TAATCCTACGCCGGAGGAGTTCCAGGTTGCTGTTAACTCTTCAGCAACGGATTTTGTGTA 529
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 460 TAATCCTACGCCTGAGGAGTTCCAGGTTGCTGTTAACTCTTCAGCAACGGATTTTGTCTA 519
Query 530 CTTGCAAGGGGAACATAGTGGAGATAGTGATGAAGTTGGTCCCTTAGTGTTGGGATATAC 589
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CTTGCAAGGGGAGTATAGTGGAGATAGTGATGAAGTTGGTCCCTTAGTGTTGGGATATAC 579
Query 590 TGATTTTTCTACTCCTGATGCCTTGGTTACTCTGTTTGGTTCCACATTACCGACAACGGT 649
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 580 TGATTTTTCTACTCCTGATGCCTTGGTTACTCTGTTTGGTTCCACATTACCAACAACGGT 639
Query 650 TTACCTTGAGCTCCCAAATGGTGAAGAATTAGCTCAAGCACTCTACTCTAAGGGTGTTCA 709
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 640 TTACCTTGAGCTCCCAAATGGTGAAGAATTGGCTCAAGCACTCTACTCTAAGGGTGTTCA 699
Query 710 ATATGTTATTTATTGGAAAAATGTTTTCTCGAAATATGCAGCCTGCCATTTTCGCCATTC 769
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 700 ATATGTTATTTATTGGAAAGATGTTTTCTCGAAATATGCAGCCTGCCATTTTCGCCATGC 759
Query 770 TCTGTTTTCAGTCATACAGAGTTCGTGCAGCGATACATGGGATGTGTTCCATGTTGCAGA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TCTGTTTTCAGTCATACAGAGTTCGTGCAGCGATACATGGGATGTGTTCCATGTTGCAGA 819
Query 830 AGCATCTTTCCGACTCTATTGTACAAGTGACAATGCTGTCCTTCCTTCTAACAGCAACCG 889
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 820 AGCATCTTTCCGACTCTATTGTACTAGTGACAATGCTGTCCTTCCTTCTAACAGCAACCG 879
Query 890 TAAAATGAATTATGAGATGGGACCTTGCTTGCTTGGAGAACCTCCAAAGATTGATGTGGT 949
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 880 TAAAATGAATTATGAGATGGGACCCTGCTTGCTGGGAGAACCTCCAAAGATTGATGTGGT 939
Query 950 TTCACCGGAAGCTGATGAACTAGAAGAGGAAAATTCATTAGAGAGCCTCCCATCAATAAA 1009
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTCGCCGGAAGCTGATGAACTAGAAGAGGAAAATTCATTAGAGAGCCTCCCATCAATAAA 999
Query 1010 GATATATGATGAAGATGTTACTGTGAGGTTTCTTTTGTGTGGACCACCATGCACAGTGGA 1069
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1000 GATATATGATGAAGATGTTACCGTGAGGTTTCTTTTGTGTGGACCACCATGCACACTGGA 1059
Query 1070 TACATTTTTACTGGGATCTTTGATGGATGGACTTAATGCTCTCTTGCGAATAGAAATGCG 1129
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1060 TACATTTTTACTGGGATCGTTGGTGGATGGACTTAATGCTCTCTTGAGAATAGAAATGCG 1119
Query 1130 AGGAAGTAAGCTCCATAACCGTTCTAGTGCTCCAGCACCTCCTCTTCAAGCAGGAACATT 1189
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AGGAAGTAAGCTCCATAATCGTTCTAGTGCTCCAGCACCTCCTCTTCAAGCAGGAACATT 1179
Query 1190 TACTCGTGGTGTAGTGACCATGCGTTGTGATGTCTCGACCTGTTCTTCAGCACACATATC 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TACTCGTGGTGTAGTGACCATGCGTTGTGATGTCTCGACCTGTTCTTCAGCACACATATC 1239
Query 1250 AATGCTTGTGTCTGGAAATGCGCAGACCTGTTTCAGTGATCAGCTTTTGGAAAATCACAT 1309
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AATGCTGGTGTCTGGAAATGCGCAGACCTGTTTCAGTGATCAGCTTTTGGAAAATCACAT 1299
Query 1310 AAAACATGAGGTCGTTGAGAAGATCCAACTAGTCCATTCAGTGGTG-AACTCAGAAGAAA 1368
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1300 AAAACATGAGGTCGTTGAGAAGATCCAACTAGTCCATTCAGTGG-GAAACTCAGAAGAAA 1358
Query 1369 CAAAGCGGGGTTTCTCTGAGCCTCGTAGATCTGCCTCAATAGCTTGTGGAGCAAGTGTGT 1428
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1359 CAAAGCGGGGGTTCTCTGAGCCTCGGAGATCTGCCTCAATAGCTTGTGGGGCAAGTGTGT 1418
Query 1429 GTGAAGTTTCGATGCAAGTCCCAACATGGGCTCTGCAGGTTTTAAGACAGTTGGCGCCGG 1488
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 1419 GTGAAGTTTCGATGCAAGTCCCAACATGGGCTCTGCAGGTTTTAAGACAGCTGGCACCTG 1478
Query 1489 ATGTGTCATACCGCAGTTTAGTCGTTCTTGGAGTAGCTAGCATTCAGGGGTTGTCTGTTG 1548
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1479 ATGTGTCATACCGCAGTTTAGTTGTCCTTGGAGTAGCAAGCATTCAGGGGTTGTCTGTTG 1538
Query 1549 CTTCCTTTGAGAAAGATGATGCAGAACGTTTACTTTTCTTCTGCGGACAACAGATCAATG 1608
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 CTTCCTTTGAAAAAGATGATGCAGAACGTTTACTTTTCTTCTGCGGACAACAGATCAATG 1598
Query 1609 ATACTTCAAATCATGATGCTCTTTTATCCAAAATTCCTAACTGGTTAACACCTCCTTTGC 1668
||||||||||||||||| ||||| |||||||||||||| ||||||| || ||||||||||
Sbjct 1599 ATACTTCAAATCATGATACTCTTCTATCCAAAATTCCTCACTGGTTGACGCCTCCTTTGC 1658
Query 1669 CAACCAGAAAAAGATCCGAGCCATGCAGAGAAAGTAAGGAAATTGAAAACGGAGGACCTA 1728
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1659 CAACCAGAAAAAGATCCGAACCATGCAGAGAAAGTAAGGAAATCGAAAACGGGGGACCTA 1718
Query 1729 CATCAAGGAAAATCAACGTGGCTGCTTTGAGACCAATACCTCACACCCGTCGACATAAGA 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 CATCAAGGAAAATCAACGTGGCTGCTTTGAGACCAATACCTCACACCCGTCGACATAAGA 1778
Query 1789 TGATACCTTTCTCTGGTTACTCTGAAATTGGAAGATTTGATGGTGACCACACCAAAGGAA 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 TGATACCTTTCTCTGGTTACTCTGAAATTGGAAGATTTGATGGTGACCACACCAAAGGAA 1838
Query 1849 GCTTGCCTATGCCTCCAAAGCATGGTGCATCAGGTGGCACTCCAGTAACTCACCGTAAAG 1908
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1839 GCTTGCCTATGCCTCCAAAGCATGGTGCATCAGGAGGCACTCCGGTAACTCACCGTAAAG 1898
Query 1909 CTTTCTCTGGTTCGTACCAGAGAAAGCAAATCATCTCACTAAACCCTCTACCTTTaaaaa 1968
|||| |||||||||||||||||||||||||| |||||||| |||||||| ||| | || |
Sbjct 1899 CTTTTTCTGGTTCGTACCAGAGAAAGCAAATAATCTCACTGAACCCTCTGCCTCTCAAGA 1958
Query 1969 aaCACGACTGTGGAAGAGCGCATATTCAAGTTTGCTCAGAGGAGGAGTTTCTGAGGGATG 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 AACACGACTGTGGAAGAGCGCATATTCAAGTTTGCTCAGAGGAGGAGTTTCTGAGGGATG 2018
Query 2029 TAATGCAGTTTCTGCTAATACGAGGACATACCCGGCTAGTTCCTCCAGGGGGACTAGCGG 2088
| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 2019 TGATGCAGTTCCTGCTAATACGAGGACATAGCCGGCTTGTTCCTCCAGGGGGACTTGCGG 2078
Query 2089 AGTTTCCAGATGCTGTTCTCAACTCAAAACGGCTTGATCTCTTCAA-CTTGTATAGAGAG 2147
||||||| ||||||||||| |||||||| ||||||||| | ||||| || ||| ||||||
Sbjct 2079 AGTTTCCGGATGCTGTTCTTAACTCAAAGCGGCTTGATTTGTTCAATCT-GTACAGAGAG 2137
Query 2148 GTTGTATCACGGGGAGGGTTCCATGTAGGTAATGGGATCAACTGGAAGGGACAAGTTTTC 2207
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2138 GTTGTATCACGGGGAGGGTTCCACGTAGGGAATGGGATCAACTGGAAGGGACAAGTTTTC 2197
Query 2208 TCAAAGATGCGCAACCACACACTCACAAACAGAATGACTGGTGTGGGTAATACCCTGAAA 2267
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2198 TCGAAGATGCGGAACCACACGCTCACAAACAGAATGACTGGTGTGGGTAATACCCTGAAA 2257
Query 2268 AGACACTATGAGACGTATCTATTGGAGTATGAGTATGCTCATGATGATGTAGATGGAGAG 2327
||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 2258 AGACACTATGAGACGTATCTACTGGAGTATGAATATGCTCATGATGATGTTGATGGAGAG 2317
Query 2328 TGCTGTTTAATATGTCGCAGTAGCACAGCTGGTGACTGGGTGAACTGTGGATCATGTGGA 2387
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2318 TGTTGTTTAATTTGTCGCAGTAGCACAGCGGGTGACTGGGTGAACTGTGGATCATGTGGA 2377
Query 2388 GAGTGGGCTCATTTCGGATGTGACAGAAGGCCTGGCCTCGGCGCCTTCAAGGACTATGCA 2447
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 2378 GAGTGGGCTCATTTCGGATGTGACAGAAGGCCTGGCCTCGGCGCGTTCAAAGATTATGCG 2437
Query 2448 AAAACAGATGGGTTGGAATATGTGTGCCCAAATTGTAGTGTCTCAAATTACAGGAAGAAG 2507
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2438 AAAACGGATGGGTTGGAATATGTGTGCCCAAATTGTAGCGTCTCGAATTACAGGAAGAAG 2497
Query 2508 TCTC-AGAAGACCTCCAACGGTGGCTTGCTTGTACCTTAGCTTTGTACCTTAGGTTCATG 2566
||| | ||||| ||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 2498 ACTCCA-AAGACGTCCAATGGCGGCTTGCTTGTACCTTAGCTTTGTACCTTAGCTTCATG 2556
Query 2567 TTTCTTCTTTTGTTGTACTTTT-GCCTTGGAACCAAATGATTGATTGATTCCTCTAATGT 2625
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 2557 TTTCTTCTTTTGTTGTACTTTTTGCCTTGGAACCAAATGATTGATTGATTCCTCTGATAT 2616
Query 2626 TTCACGAGtttttttGC 2642
|||||||||||||||||
Sbjct 2617 TTCACGAGTTTTTTTGC 2633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99644080920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5