BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G43800.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936976 jgi|Araly1|936976|scaffold_501167.1 1186 0.0
> Ahg936976 jgi|Araly1|936976|scaffold_501167.1
Length=728
Score = 1186 bits (642), Expect = 0.0
Identities = 699/727 (96%), Gaps = 2/727 (0%)
Strand=Plus/Plus
Query 47 aagaagaagatcaaa-aaaaaaagGATGTCAGAAGAAGAAGTGGTGGTGTTGAACTTCTG 105
||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAGGTCAAACAAAAAAA-AATGTCAGAAGAAGAAGTGGTGGTGTTGAACTTCTG 59
Query 106 GCCAAGCATGTTCGGAGCAAGAGTGATCATGGCATTAGAGGAGAAAGAGATCAAGTTCGA 165
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 GCCAAGCATGTTCGGAGCAAGAGTGATCATGGCGTTAGAGGAGAAAGAGATCAAGTTCGA 119
Query 166 GTACAAGGAAGAAGATGTGTTTGGTCAGAAGACCGATCTATTGCTCCAAAGCAACCCGGT 225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTATAAGGAAGAAGATGTGTTTGGTCAGAAGACCGATCTATTGCTCCAAAGCAACCCGGT 179
Query 226 TAACAAGAAAATTCCGGTTCTCATCCACAACGGTAAACCGGTATGCGAGTCCAATATCAT 285
| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TCACAAGAAGATCCCGGTTCTCATCCACAACGGTAAACCTGTATGCGAGTCCAATATCAT 239
Query 286 AGTCGAATACATCGATGAGGTCTGGAAAGACGATAAGACTCTCCGTCTACTACCTTCTGA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTCGAATACATCGATGAGGTCTGGAAAGACGATAAGACTCTCCGTCTACTACCTTCTGA 299
Query 346 TCCTTATCAGAAGTCACAGTGTAGATTTTGGGCTGATTTGATTGACAAAAAGGTTTTTGA 405
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCATATGAGAAGTCACAGTGTAGATTTTGGGCTGATTTGATTGACAAAAAGGTTTTTGA 359
Query 406 CGCTGGAAGAAGAACGTGGACAAAGAGGGGCAAAGAACAAGAAGAAGCGAAACAAGAGTT 465
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CGCTGGAAGAAGAACATGGACAAAGAGGGGTAAAGAACAAGAAGAAGCGAAACAAGAGTT 419
Query 466 CATAGAGATATTGAAAGTGTTAGAAAGAGAGCTTGGAGATAAGGTCTACTTCGGAGGAAA 525
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CATAGAGATCTTGAAAGTGTTAGAAAGAGAGCTTGGAGATAAGGTCTACTTCGGAGGAAA 479
Query 526 CGACAACGTTTCGATGGTGGACTTGGTTCTCATCTCCTACTACCCTTGGTTCCACACATG 585
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 480 CGACAACGTTTCGATGGTGGACTTGGTCCTCATCTCCTACTACCCTTGGTTCCACACGTG 539
Query 586 GGAGACTATTGGTGGTTTTAGTGTCGAGGACCACACTCCCAAGCTAATGGACTGGATCCG 645
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GGAGACGATTGGTGGTTTTAGTGTCGAGGATCACACTCCCAAGCTAATGGACTGGATCCG 599
Query 646 TAAATGCTTAACCCGACCCGCTATCTCGAAATCTTTACCTGACCCGCTGAAGATATTTGA 705
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 600 TAAATGCTTAACCCGACCCGCTATCTCGAAATCTTTACCTGACCCACTAAAGATTTTTGA 659
Query 706 TCGAGTCACTCAGATCATAAAGGTCCATGAGTTTTTCTATGGTTATTGATAGTCTAAATC 765
||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 660 TCGAGTCACTCAGATCATAAAGGTCCATGAGTTCTTCTATGGTTATTGATTCTCCAAATC 719
Query 766 ATATGCT 772
|| |||
Sbjct 720 GTACGCT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5