BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44110.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937016 jgi|Araly1|937016|scaffold_501207.1 2176 0.0
Ahg489058 jgi|Araly1|489058|fgenesh2_kg.6__2192__AT5G22060.1 1312 0.0
Ahg920731 jgi|Araly1|920731|scaffold_102012.1 219 8e-56
Ahg948374 jgi|Araly1|948374|scaffold_800261.1 108 2e-22
Ahg933064 jgi|Araly1|933064|scaffold_401052.1 108 2e-22
Ahg925089 jgi|Araly1|925089|scaffold_200650.1 108 2e-22
Ahg919557 jgi|Araly1|919557|scaffold_100838.1 108 2e-22
> Ahg937016 jgi|Araly1|937016|scaffold_501207.1
Length=1386
Score = 2176 bits (1178), Expect = 0.0
Identities = 1321/1390 (95%), Gaps = 10/1390 (1%)
Strand=Plus/Plus
Query 178 TTCGTTACAACGGCGAAAAGATGTTCGGTAGAGGACCCTCGAAGAAGAGCGACAACACTA 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCGTTAGAACGGCGAAAAGATGTTCGGTAGAGGACCCTCGAAGAAGAGCGACAACACTA 60
Query 238 AGTTCTACGAGATCTTAGGTGTTCCTAAGAGCGCTTCACCAGAAGATCTCAAGAAAGCTT 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 AGTTCTACGAGATCTTAGGTGTTCCTAAGAGCGCATCACCAGAAGATCTCAAGAAAGCTT 120
Query 298 ACAAAAAAGCCGCTATCAAGAATCATCCTGATAAGGGTGGAGATCCCGAGAAGTTTAAGG 357
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 121 ACAAAAAAGCTGCTATCAAGAACCATCCTGATAAGGGTGGAGATCCCGAGAAGTTCAAAG 180
Query 358 AGTTAGCACAAGCTTATGAAGTGCTTAGTGACCCGGAGAAGCGTGAGATTTATGACCAGT 417
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTTAGCTCAAGCTTATGAAGTTCTTAGTGACCCGGAGAAGCGTGAGATTTATGACCAGT 240
Query 418 ATGGAGAGGATGCACTCAAGGAAGGAATGGGTGGTGGAGGAGGTGGACATGATCCATTTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGAGAGGATGCACTCAAGGAAGGAATGGGTGGTGGAGGAGGTGGACATGATCCATTTG 300
Query 478 ATATTTTCTCATCCTTCTTTGGTGGAGGCCCCTTTGGAG--G-TAATACCAGCCGGCAAA 534
||||||||||||||||||||||| || |||||||||||| | | || ||||||| ||
Sbjct 301 ATATTTTCTCATCCTTCTTTGGTCGAAGCCCCTTTGGAGATGGTGGTAGCAGCCGGGGAA 360
Query 535 GGAGGCAGAGGCGTGGTGAGGATGTTGTTCATCCCTTGAAGGTATCTCTTGAGGATGTGT 594
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 361 GGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCTTTGAAGGTTTCTCTTGAGGATGTGT 420
Query 595 ACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTCTAAGTGTAACG 654
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 421 ACCTTGGAACAATGAAGAAGCTCTCACTTTCTAGGAATGCTCTCTGCTCAAAGTGTAACG 480
Query 655 GAAAGGGATCAAAATCTGGAGCCTCCTTGAAATGTGGAGGGTGTCAGGGATCTGGTATGA 714
||||||| |||||||||||||||||| |||||||||| || ||||| || ||||||||||
Sbjct 481 GAAAGGGGTCAAAATCTGGAGCCTCCATGAAATGTGGTGGATGTCAAGGTTCTGGTATGA 540
Query 715 AGGTGTCTATTAGGCAGCTTGGACCTGGAATGATCCAGCAGATGCAGCATGCATGTAATG 774
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGTGTCAATTAGGCAGCTCGGACCTGGAATGATCCAGCAGATGCAGCATGCATGTAATG 600
Query 775 AATGCAAAGGGACAGGTGAGACCATCAATGATCGGGACAGGTGTCCACAATGCAAAGGAG 834
|||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 601 AATGCAAAGGAACAGGTGAGACCATCAATGATCGCGACAGATGTCCGCAATGCAAAGGAG 660
Query 835 ACAAGGTCATTCCTGAGAAGAAGGTGCTTGAAGTGAATGTGGAGAAGGGAATGCAACACA 894
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAAGGTGATTCCTGAGAAGAAGGTGCTTGAAGTGAATGTGGAGAAGGGAATGCAACACA 720
Query 895 GTCAGAAGATCACATTTGAAGGACAAGCAGATGAAGCGCCTGACACTGTCACTGGAGATA 954
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 GTCAGAAGATCACATTCGAAGGACAAGCGGATGAAGCGCCTGACACTGTCACTGGAGATA 780
Query 955 TAGTGTTTGTCCTTCAGCAGAAAGAGCACCCAAAGTTCAAGAGAAAGGGAGAAGACCTCT 1014
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 781 TAGTGTTTGTCCTTCAGCAGAAAGAGCATCCGAAGTTCAAGAGAAAGGGTGAAGACCTCT 840
Query 1015 TTGTGGAGCACACACTTTCTCTAACCGAAGCTTTGTGTGGCTTCCAATTTGTTCTGACTC 1074
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 841 TTGTGGAGCACACACTTTCTCTAACAGAAGCTTTATGTGGCTTTCAATTTGTTCTGACTC 900
Query 1075 ACTTGGATGGCAGAAGTCTTCTCATTAAATCTAATCCTGGGGAGGTCGTGAAACCTGATT 1134
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTTGGATGGCAGAAATCTTCTCATTAAATCTAATCCTGGGGAGGTCGTGAAACCTGATT 960
Query 1135 CATACAAGGCAATAAGCGATGAAGGAATGCCGATATACCAGAGGCCATTCATGAAGGGTA 1194
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CATACAAGGCAATTAGCGATGAAGGAATGCCGATATACCAGAGGCCATTCATGAAGGGTA 1020
Query 1195 AGCTCTACATCCACTTCACAGTGGAGTTCCCGGACTCGTTGAGCCCAGATCAGACCAAAG 1254
||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||
Sbjct 1021 AGCTCTACATCCACTTCACAGTGGAGTTCCCAGACTCGCTGAGCCCTGATCAAACCAAAG 1080
Query 1255 CACTGGAAGCTGTTCTACCTAAGCCGTCAACAGCTCAGTTGAGTGACATGGAGATAGATG 1314
||||||||||||| || ||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 1081 CACTGGAAGCTGTGCTGCCTAAACCCTCAACAACTCAATTGAGTGACATGGAGATAGATG 1140
Query 1315 AATGCGAGGAGACCACGCTCCACGATGTCAACATTGAGGATGAGATGAGGAGGAAGGCAC 1374
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1141 AATGCGAGGAGACCACGCTCCACGATGTCAACATTGAGGATGAAATGAAGAGGAAGGCAC 1200
Query 1375 AAGCTCAAAGAGAGGCTTATGATGATGACGATGAAGATGATGACCATCCGGGTGGTGCTC 1434
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1201 AAGCTCAAAGAGAGGCTTATGACGATGACGATGAAGATGATGACCATCCCGGTGGTGCTC 1260
Query 1435 AAAGGGTGCAATGTGCCCAGCAGTAAGTAACTCCTTAGAGAGA--CT-TTGACCCACATG 1491
|||||||||||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 1261 AAAGGGTGCAATGTGCTCAGCAGTAAGTAACTCCTTAGAGAGAGACTATT-ACCCACATG 1319
Query 1492 GGTTTGGGCTCCAACCAATTTGTCTCTTGCTTTTTCATTCTAAGTGTATTGGAGTCTTTA 1551
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1320 GGTTTGG-CTCCAACCA-TTTGTCTCTTGCTTTTTCATTCTAAGTGTATTGGAGTCTT-A 1376
Query 1552 TGGGAGTTTG 1561
||||||||||
Sbjct 1377 TGGGAGTTTG 1386
> Ahg489058 jgi|Araly1|489058|fgenesh2_kg.6__2192__AT5G22060.1
Length=1524
Score = 1312 bits (710), Expect = 0.0
Identities = 1116/1308 (85%), Gaps = 43/1308 (3%)
Strand=Plus/Plus
Query 171 TAGGGTTTTCGTTACAACG-GCGAAAAGATGTTCGGTAGAGGACCCTCGAA-GAAGAGCG 228
|||||||||||| | || | | ||||| ||||| || |||||||| || || ||||||||
Sbjct 64 TAGGGTTTTCGTAAGAA-GAGAGAAAACATGTTTGGAAGAGGACCTTC-AAGGAAGAGCG 121
Query 229 ACAACACTAAGTTCTACGAGAT-CTTAGGTGTTCCTAAGAGCGCTTCACCAGAAGATCTC 287
| ||||| |||||||||||||| ||| ||||||||||||| ||| ||||| |||||||||
Sbjct 122 ATAACACCAAGTTCTACGAGATCCTT-GGTGTTCCTAAGACCGCATCACCGGAAGATCTC 180
Query 288 AAGAAAGCTTACAAAAAAGCCGCTATCAAGAATCATCCTGATAAGGGTGGAGATCCCGAG 347
||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 181 AAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGGAGATCCCGAA 240
Query 348 AAGTTTAAGGAGTTAGCACAAGCTTATGAAGTGCTTAGTGACCCGGAGAAGCGTGAGATT 407
|||||||| ||| |||| || ||||||||||| |||||||| || ||||||||||||||
Sbjct 241 AAGTTTAAAGAGCTAGCTCAGGCTTATGAAGTTCTTAGTGATCCTGAGAAGCGTGAGATC 300
Query 408 TATGACCAGTATGGAGAGGATGCACTCAAGGAAGGAATGGGTGGTGGAGGAGGTGGACAT 467
|||||||| ||||| ||||||||||||||||| ||||||||||||||| | ||||| ||
Sbjct 301 TATGACCAATATGGGGAGGATGCACTCAAGGAGGGAATGGGTGGTGGAAGCGGTGGGCAC 360
Query 468 GATCCATTTGATATTTTCTCATCCTTC-TT--TGGTGGAGG---CCCCTTTGGAGGTAAT 521
||||| |||||||| ||||| |||||| || |||||| || ||| || |||||| ||
Sbjct 361 GATCCGTTTGATATCTTCTCTTCCTTCTTTGGTGGTGGTGGAAACCCATTCGGAGGTCAT 420
Query 522 ACCAGCCGGCA-AAGGAGGCAGAGGCGTGGTGAGGATGTTGTTCATCCCTTGAAGGTATC 580
|||||| | ||| ||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 421 ---AGCCGG-AGAAGAAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCCTGAAGGTTTC 476
Query 581 TCTT-GAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCT 639
||| |||||||| || || || |||| |||||||| |||||||||||||| | | | |
Sbjct 477 -CTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGGTTTTGT 535
Query 640 GCTCTAAGTGTAACGGAAAGGGATCAAAATCTGGAGCCTCCTTGAAATGTGGAGGGTGTC 699
|||| ||||||||||| ||||| ||||| |||||||| || |||||||||| || ||||
Sbjct 536 GCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTGGCTGTC 595
Query 700 AGGGATCTGGTATGAAGGTGTCTATTAGGCAGCTTGGACCTGGAATGATCCAGCAGATGC 759
| || || || |||||||| || || |||||| |||||||||||||||| ||||||||||
Sbjct 596 AAGGTTCGGGAATGAAGGTCTCGATCAGGCAGGTTGGACCTGGAATGATTCAGCAGATGC 655
Query 760 AGCATGCATGTAATGAATGCAAAGGG-ACAGGTGAGACCATCAATGATCGGGACAGGTGT 818
||||||| |||||||| ||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 656 AGCATGCTTGTAATGATTGC-AAGGGCACAGGAGAGACCATCAATGATCGGGACAGGTGT 714
Query 819 CCACAATGCAAAGGAGACAAGGTCATT-CCTGAGAAGAAGGTGCTTGAAGTGAATGTGGA 877
||||||||||||| ||| ||||| || || |||||||||||||||||||| ||||||||
Sbjct 715 CCACAATGCAAAGCAGAGAAGGTTGTTTCC-GAGAAGAAGGTGCTTGAAGTAAATGTGGA 773
Query 878 GAAGGGAATGCAACACAGTCAGAAGATCACATTTGAA-GGACAAGCAGATGAAGCGCCTG 936
||||||||||||||||| |||||||||||| || || ||||||||||||||||||||||
Sbjct 774 GAAGGGAATGCAACACAATCAGAAGATCACGTTC-AATGGACAAGCAGATGAAGCGCCTG 832
Query 937 ACACTGTCACTGGAGATATAGTGTTTGTCCTTCAGCAGAAAGAGCACCCAAAGTTCAAGA 996
| ||||| || |||||||||||||| ||| |||||||||| ||||||||||||||||| |
Sbjct 833 ATACTGTTACCGGAGATATAGTGTTCGTCATTCAGCAGAAGGAGCACCCAAAGTTCAAAA 892
Query 997 GAAAGGGAGAAGACCTCTTTGTGGAGCACACACTTTCTCTAACCGAAGCTTTGTGTGGCT 1056
||||||| || || ||||||||||||||||| || ||||||||||| || ||||||||||
Sbjct 893 GAAAGGGGGATGATCTCTTTGTGGAGCACACCCTCTCTCTAACCGAGGCCTTGTGTGGCT 952
Query 1057 TCCAATTTGTTCTGACTCACTTGGATGGCAGA-AGTCTTCTCATTAAATCTAATCCTGGG 1115
|||| |||||| |||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 953 TCCAGTTTGTTTTGACCCATTTGGACAAAAGGCAG-CTTCTCATCAAATCCAATCCCGGA 1011
Query 1116 GAGGTCGTGAAACCTGATTCATACAAGGCAATAAGCGATGAAGGAATGCCGATATACCAG 1175
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1012 GAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACCAA 1071
Query 1176 AGGCCATTCATGAAGGGTAAGCTCTACATCCACTTCACAGTGGAGTTCCCGGACTCGTTG 1235
||||| ||||||||||||||||| |||||||||||||| || ||||||||||| ||| ||
Sbjct 1072 AGGCCGTTCATGAAGGGTAAGCTATACATCCACTTCACTGTTGAGTTCCCGGATTCGCTG 1131
Query 1236 AGCCCAGATCAGACCAAAG-C-ACTGGAAGCTGTTCTACCTAAGCCGTC-AA--CAGCTC 1290
|||||||||||||| |||| | | || |||| ||| | || |||||| | || |||||
Sbjct 1132 AGCCCAGATCAGAC-AAAGGCCATTG-AAGCAGTTTTGCCAAAGCCGACCAAGGCAGCT- 1188
Query 1291 AGTTGAGTGACATGGAGATAGATGAATGCGAGGAGACCACGCTCCACGATGTCAACATTG 1350
| | ||||| ||||| ||||| || ||||| ||||| || || || ||||| |||||||
Sbjct 1189 A-TA-AGTGATATGGAAATAGACGAGTGCGAAGAGACGACTCTGCATGATGTGAACATTG 1246
Query 1351 AGGATGAGATGAGGAGGAAGGCACAAGCTCAAAGAGAGGCTTATGATGATGACGATGAAG 1410
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 1247 AGGATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGA---CGATGAGG 1303
Query 1411 ATGATGACCATCCGGGTGGTGCTCAAAGGGTGCAATGTGCCCAGCAGT 1458
|||| || | || || |||||||| | |||||||||||||||||||
Sbjct 1304 ATGA--AC-ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGT 1348
> Ahg920731 jgi|Araly1|920731|scaffold_102012.1
Length=375
Score = 219 bits (118), Expect = 8e-56
Identities = 145/158 (92%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 358 AGTTAGCACAAGCTTATGAAGTGCTTAGTGACCCGGAGAAGCGTGAGATTTATGACCAGT 417
||||||| |||||||||||||| |||||||||| ||||||| | ||||||||||||||||
Sbjct 157 AGTTAGCTCAAGCTTATGAAGTTCTTAGTGACCTGGAGAAGTGGGAGATTTATGACCAGT 216
Query 418 ATGGAGAGGATGCACTCAAGGAAGGAA-TGGGTGGTGGAGGAGGTGGACATGATCCATTT 476
||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 217 ATGGAGAGGATGCACTCAAGGAAGGAAATTG-TGGTGGAGGAGGTAGACATGATCCATTT 275
Query 477 GATATTTTCTCATCCTTCTTTGGTGGAGGCCCCTTTGG 514
| ||||||||||||||| ||||||||| |||| |||||
Sbjct 276 GTTATTTTCTCATCCTTTTTTGGTGGAAGCCCGTTTGG 313
> Ahg948374 jgi|Araly1|948374|scaffold_800261.1
Length=343
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 584 TGAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 643
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAGGAT-TGTACCTT-GAACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 58
Query 644 TAAGTGTAACG 654
||||||||||
Sbjct 59 AAAGTGTAACG 69
> Ahg933064 jgi|Araly1|933064|scaffold_401052.1
Length=343
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 584 TGAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 643
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAGGAT-TGTACCTT-GAACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 58
Query 644 TAAGTGTAACG 654
||||||||||
Sbjct 59 AAAGTGTAACG 69
> Ahg925089 jgi|Araly1|925089|scaffold_200650.1
Length=343
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 584 TGAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 643
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAGGAT-TGTACCTT-GAACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 58
Query 644 TAAGTGTAACG 654
||||||||||
Sbjct 59 AAAGTGTAACG 69
> Ahg919557 jgi|Araly1|919557|scaffold_100838.1
Length=343
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 584 TGAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 643
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAGGAT-TGTACCTT-GAACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC 58
Query 644 TAAGTGTAACG 654
||||||||||
Sbjct 59 AAAGTGTAACG 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5