BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44320.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1 1666 0.0
Ahg323132 jgi|Araly1|323132|fgenesh1_pm.C_scaffold_5000676 1229 0.0
Ahg894102 jgi|Araly1|894102|Al_scaffold_0006_2098 496 3e-139
> Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1
Length=1095
Score = 1666 bits (902), Expect = 0.0
Identities = 1033/1097 (94%), Gaps = 6/1097 (1%)
Strand=Plus/Plus
Query 19 AAAAACAAAGACTCGAGTTAATATGTCTAGTACTGAAGAAATGTCATCAGTCAAAAACAC 78
||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1 AAAAACAAAGACTTGAGTTAATATGTCTAGTACTAAAGAAATGTCAACTGTCAAAAACAC 60
Query 79 AACTCAGGTTATTGGCGTTGACCCATCCTCCACCGTACGAGTTACCATCGTTCAATCTTC 138
||||| | ||| ||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 61 AACTCCGTTTAACGGCGTTGCCCCATCCTCCACCGTGCGAGTTACCATCGTTCAATCGTC 120
Query 139 CACCGTCTATAATGATAC-CCCGGCCACTTTAGACAAGGCGGAGAAGTTTATTGTGGAGG 197
|||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 121 CACCGTCTATAACGATACTCCC-GCCACATTAGACAAGGCGGAGAAGTTTATTGTAGAGG 179
Query 198 CGGCGAGCAAAGGAGCGAAGTTGGTGTTGTTTCCC-GAGGCGTTCATCGGCGGTTATCCT 256
|||||||||| || |||||| | |||||| ||||| |||||||| ||||| |||||||||
Sbjct 180 CGGCGAGCAAGGGTGCGAAGCTAGTGTTG-TTCCCGGAGGCGTTTATCGGTGGTTATCCT 238
Query 257 CGAGGTTTTAGGTTTGGTTTAGCGGTGGGAGTTCATAACGAAGAAGGGCGTGATGAGTTT 316
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 239 CGTGGTTTTAGGTTTGGTTTAGCGGTGGGAGTTCATAACGAAGAAGGCCGTGATGAGTTC 298
Query 317 CGTAACTACCATGCTTCTGCTATTAAAGTCCCTGGCCCTGAAGTGGAAAGATTGGCTGAG 376
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 299 CGCAACTACCATGCTTCTGCTATTAAAGTTCCTGGCCCTGAAGTAGAAAGATTGGCTGAG 358
Query 377 TTGGCCGGGAAAAATAATGTGCACTTGGTAATGGGGGCTATAGAGAAGGATGGTTATACA 436
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 TTGGCCGGGAAAAACAATGTGCACTTGGTAATGGGGGCTATAGAGAAGGATGGGTATACA 418
Query 437 CTCTATTGCACAGCTCTTTTCTTCAGTCCACAAGGTCAGTTTTTAGGTAAGCACCGTAAA 496
|||||||| || ||||||||||| ||||||||||||| ||| || ||||||||||| |||
Sbjct 419 CTCTATTGTACCGCTCTTTTCTTTAGTCCACAAGGTCGGTTCTTGGGTAAGCACCGGAAA 478
Query 497 GTCATGCCCACATCTTTGGAACGTTGCATATGGGGTCAAGGGGACGGATCAACCATCCCC 556
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTCATGCCTACATCTTTGGAACGTTGCATATGGGGTCAAGGGGACGGATCAACCATCCCC 538
Query 557 GTTTACGACACTCCTATTGGCAAAATCGGTGCTGCTATTTGCTGGGAGAATAGGATGCCC 616
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 539 GTTTACGACACTCCCATTGGAAAAATTGGTGCTGCTATTTGCTGGGAGAATAGAATGCCC 598
Query 617 CTCTACAGAACTGCATTGTACGCTAAAGGCATTGAGATTTATTGTGCACCTACTGCTGAT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTCTACAGAACTGCATTGTACGCTAAAGGCATTGAGATTTATTGTGCACCTACTGCTGAT 658
Query 677 TATTCGTTGGAATGGCAAGCATCGATGATTCACATTGCGGTAGAAGGTGGATGTTTCGTG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TATTCGTTGGAATGGCAAGCATCGATGATTCACATTGCGGTAGAAGGTGGATGTTTCGTG 718
Query 737 TTGTCAGCGCACCAGTTCTGCAAGCGTAGAGAGTTCCCTGAACATCCTGATTACTTGTTT 796
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 719 TTGTCAGCGCATCAGTTCTGCAAGCGCAAAGAGTTCCCTGAACATCCTGATTACTTGTTT 778
Query 797 AATGACATAGTAGACACTAAAGAACATGATCCTACTGTCTCCGGAGGTGGAAGTGTCATT 856
|||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 779 AATGACATTGTAGACACTAAAGAACATGATCCTACTGTTTCCGGAGGCGGTAGTGTCATT 838
Query 857 ATTTCACCTTTGGGAAAGGTTCTCGCCGGACCAAACTATGAATCAGAGGGTCTCGTCACA 916
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTTCACCTTTGGGACAGGTTCTCGCCGGACCAAACTATGAATCAGAGGGTCTCGTCACA 898
Query 917 GCTGATCTTGATCTTGGTGATATAGCAAGAGCCAAGTTATACTTCGATGTGGTTGGACAT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTGATCTTGATCTTGGTGATATAGCAAGAGCCAAGTTATACTTCGATGTGGTTGGACAT 958
Query 977 TACTCAAAGCCAGATATTTTTAACTTGACCGTAAATGAGCACCCGAAGAAACCGGTTACA 1036
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 TACTCAAAGCCAGATATTTTTAACTTGACTGTAAATGAGCACCCGAAGAAACCGGTTACA 1018
Query 1037 TTCATGACGAAGGTCGAGAAAGCAGAGGATGAATCAAACAAATAGTCAAGATTTG-CAAT 1095
||| |||| ||||| |||||||| |||||||| |||||||||||||| ||||||| || |
Sbjct 1019 TTCGTGACAAAGGTGGAGAAAGCGGAGGATGATTCAAACAAATAGTCGAGATTTGTCA-T 1077
Query 1096 TCGTCTACTGAAGTTAA 1112
|| ||| ||| ||||||
Sbjct 1078 TCATCTGCTGGAGTTAA 1094
> Ahg323132 jgi|Araly1|323132|fgenesh1_pm.C_scaffold_5000676
Length=1023
Score = 1229 bits (665), Expect = 0.0
Identities = 908/1027 (88%), Gaps = 10/1027 (1%)
Strand=Plus/Plus
Query 59 ATGTCATCAGTCAAAAACACAACTCAGGTTATTGGCGTTGACC-CATCCTCCACCGTACG 117
|||||| || || |||||||||||| | ||| ||||||| || ||||| ||| ||| |
Sbjct 1 ATGTCAACATTCGAAAACACAACTCCGTTTAACGGCGTTG-CCTCATCCACCATTGTAAG 59
Query 118 AGTTACCATCGTTCAATCTTCCACCGTCTATAATGATACCCCGGCCACTTTAGACAAGGC 177
|| ||| || || ||| | ||||||||||| || || || ||||||||| |||| |||||
Sbjct 60 AGCTACTATTGTCCAAGCCTCCACCGTCTACAACGACACTCCGGCCACTCTAGAAAAGGC 119
Query 178 GGAGAAGTTTATTGTGGAGGCGGCGAGCAAAGGAGCGAAGTTGGTGTTGTTTCCC-GAGG 236
| |||||| |||||| ||||| |||| ||| ||| ||||| ||||| || ||||| ||||
Sbjct 120 GAAGAAGTATATTGTAGAGGCTGCGAACAACGGATCGAAGCTGGTGGTG-TTCCCGGAGG 178
Query 237 CGTTCATCGGCGGTTATCCTCGAGGTTTTAGGTTTGGTTTAGCGGTGGGAGTTCATAACG 296
|||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 179 CGTTTATTGGCGGTTATCCTCGAGGTTTTAGGTTCGGTTTAGCTGTGGGAGTTCATAACG 238
Query 297 AAGAAGGGCGTGATGAGTTTCGTAACTACCATGCTTCTGCTATTAAAGTCCCTGGCCCTG 356
||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||||
Sbjct 239 AAGAAGGCCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCTGGCCCTG 298
Query 357 AAGTGGAAAGATTGGCTGAGTTGGCCGGGAAAAATAATGTGCACTTGGTAATGGGGGCTA 416
|||| |||| |||||| ||||||||||||||||| |||||| ||||||||||||| || |
Sbjct 299 AAGTTGAAAAATTGGCGGAGTTGGCCGGGAAAAACAATGTGTACTTGGTAATGGGAGCGA 358
Query 417 TAGAGAAGGATGGTTATACACTCTATTGCACAGCTCTTTTCTTCAGTCCACAAGGTCAGT 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TAGAGAAGGATGGGTATACACTCTATTGCACAGCTCTTTTCTTCAGTCCACAAGGTCAGT 418
Query 477 TTTTAGGTAAGCACCGTAAAGTCATGCCCACATCTTTGGAACGTTGCATATGGGGTCAAG 536
| || ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 419 TCTTGGGTAAGCACCGTAAACTCATGCCCACAACTTTGGAACGTTGCATTTGGGGTCAAG 478
Query 537 GGGACGGATCAACCATCCCCGTTTACGACACTCCTATTGGCAAAATCGGTGCTGCTATTT 596
|||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||
Sbjct 479 GGGACGGATCAACCATTCCCGTTTACGACACTCCCATCGGCAAACTCGGTGCTGCTATTT 538
Query 597 GCTGGGAGAATAGGATGCCCCTCTACAGAACTGCATTGTACGCTAAAGGCATTGAGATTT 656
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 539 GCTGGGAGAATAGGATGCCCCTCTACAGAACTGCATTGTACGCCAAAGGCATTGAGCTTT 598
Query 657 ATTGTGCACCTACTGCTGATTATTCGTT-GGAATGGCAAGCATCGATGATTCACATTGCG 715
|||||||||||||||||||| ||| | |||||||||| | |||||| |||||||||||
Sbjct 599 ATTGTGCACCTACTGCTGATGGTTC-TAAGGAATGGCAATCGTCGATGCTTCACATTGCG 657
Query 716 GTAGAAGGTGGATGTTTCGTGTTGTCAGCGCACCAGTTCTGCAAGCGTAGAGAGTTCCCT 775
| ||||||||||||||||||||||| || |||||||||| |||||| ||| ||||||
Sbjct 658 ATCGAAGGTGGATGTTTCGTGTTGTCGGCTTGCCAGTTCTGCCAGCGTAAAGATTTCCCT 717
Query 776 GAACATCCTGATTACTTGTTTAATGACATAGTAGA-CA-CTAAAGAACATGATCCTACTG 833
|| |||||||| |||||||||| ||| | | | | || | |||||||||||| ||| ||
Sbjct 718 GATCATCCTGACTACTTGTTTACCGACTTGG-ACAACAAC-AAAGAACATGATGCTATTG 775
Query 834 TCTCCGGAGGTGGAAGTGTCATTATTTCACCTTTGGGAAAGGTTCTCGCCGGACCAAACT 893
||||| ||| ||||||||||||||||||||| ||||| ||||||| || ||||||||||
Sbjct 776 TCTCCCAAGGCGGAAGTGTCATTATTTCACCTATGGGACAGGTTCTTGCTGGACCAAACT 835
Query 894 ATGAATCAGAGGGTCTCGTCACAGCTGATCTTGATCTTGGTGATATAGCAAGAGCCAAGT 953
|||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 836 TTGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTAATGAGATAGCAAGAGCTAAGT 895
Query 954 TATACTTCGATGTGGTTGGACATTACTCAAAGCCAGATATTTTTAACTTGACCGTAAATG 1013
| ||||| |||||||| ||||||||||| ||||||||| || | ||||||||||||||||
Sbjct 896 TGTACTTTGATGTGGTCGGACATTACTCGAAGCCAGATGTTCTCAACTTGACCGTAAATG 955
Query 1014 AGCACCCGAAGAAACCGGTTACATTCATGACGAAGGTCGAGAAAGCAGAGGATGAATCAA 1073
|||||||||||||||||||||||||| || ||||||| |||||||| |||||||| ||||
Sbjct 956 AGCACCCGAAGAAACCGGTTACATTCGTGTCGAAGGTGGAGAAAGCGGAGGATGAGTCAA 1015
Query 1074 ACAAATA 1080
|||||||
Sbjct 1016 ACAAATA 1022
> Ahg894102 jgi|Araly1|894102|Al_scaffold_0006_2098
Length=1071
Score = 496 bits (268), Expect = 3e-139
Identities = 740/961 (77%), Gaps = 60/961 (6%)
Strand=Plus/Plus
Query 104 TCCTCCACCGTACGAGTTACCATCGTTCAATCTTCCACCGTC-TATAATGATAC-CCCGG 161
||||||| |||||||| |||| |||| ||| | ||||||||| | | | ||||| ||| |
Sbjct 91 TCCTCCATCGTACGAGCTACCGTCGTCCAAGCCTCCACCGTCTTCT-ACGATACTCCC-G 148
Query 162 CCACTTTAGACAAGGCGGAGAAG-TTTATTG-TGGAGGCGGC-GAGCAAAGGAG-CGAAG 217
|||| |||| ||||||||| || || ||| | |||||||| || ||| || | | ||
Sbjct 149 CCACGCTAGATAAGGCGGAG-AGATTGCTTGCT-GAGGCGGCGGA-CAATGG-GTCTCAG 204
Query 218 -TTGGTGTTGTTTCCC-GAGGCGTTCATCGGCGGTTATCCTCGAGGTTTTAGGTTTGGTT 275
|| ||| || ||||| ||||| || ||||| || |||||||| || | ||| || | |
Sbjct 205 CTT-GTGGTG-TTCCCGGAGGCTTTTATCGGTGGATATCCTCGTGGCTCTAGCTTCGAAT 262
Query 276 TAGCGGTGGGAGTTCATAACG-AAGAAGGGCGTGATGAGTTTCGTAACTACCATGCTTCT 334
| ||| | || | || | || | |||| | ||||| ||||| || ||||||||||||
Sbjct 263 TGGCGATTGGTGCTCGCACCGCTA-AAGGAAGAGATGATTTTCGCAAATACCATGCTTCT 321
Query 335 GCTATTAAAGTCCCTGGCCCTGAAGTGGAAAGATTGGCTGAGTTGGCCGGGAAAAATAAT 394
|| ||| | || |||||||||||||||||| ||||||| || ||||| ||| ||||
Sbjct 322 GCCATTCATGTTCCTGGCCCTGAAGTGGAACGATTGGCGGAAATGGCCAAGAAGTATAAA 381
Query 395 GTGCACTTGGTAATGGGGGCT-ATAGAGAAGGATGGTTATACACTCTATTGCACAGCTCT 453
|| |||||| ||||| | | ||||||| ||| || ||||| || |||||||| | |||
Sbjct 382 GTATTCTTGGTTATGGGTG-TGATAGAGAGGGAAGGCTATACGCTATATTGCACCGTTCT 440
Query 454 TTTC-TTCAGTCCACAAGGTCAGTTTTTAGGTAAGCACCGTAAAGTCATGCCCACATCT- 511
|||| || | | ||||||||||||| || |||||||| || ||| ||||||| ||| ||
Sbjct 441 TTTCTTTGA-TTCACAAGGTCAGTTCTTGGGTAAGCATCGGAAACTCATGCCTACAGCTC 499
Query 512 TTGGAACGTTGCATATGGGG-TCAAGGGGACGGATCAACCATCCCCGTTTACGACACTCC 570
|| ||||||||||| ||||| | || || |||||||||||||| |||| ||| |||||
Sbjct 500 TT-GAACGTTGCATCTGGGGAT-TTGGAGATGGATCAACCATCCCTGTTTTCGATACTCC 557
Query 571 TATTGGCAAAATCGGTGCTGCTATTTGCTGGGAGAATAGGATGCC-CCTCTACAGAACTG 629
||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||| |
Sbjct 558 TATTGGCAAAATCGGTGCTGCTATTTGTTGGGAAAATAGGATGCCGTCTTTA-AGAACCG 616
Query 630 CATTGTACGCTAAAGGCATTGAGATTTATTGTGCACCTACTGCTGATTATTCGTTGGAA- 688
|| |||| || ||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 617 CAATGTATGCCAAAGGCATTGAGATTTATTGTGCACCTACTGCTGATTCTA-GA-GAAAC 674
Query 689 T-GGCAAGCATCGATGATTCACATTGCGGTAGAAGGTGGATGTTTCGTGTTGTCAGCGCA 747
| ||| |||||| |||| |||||| || | |||||||||||||| || ||||| || |
Sbjct 675 TTGGCTAGCATCAATGACTCACATCGCTCTTGAAGGTGGATGTTTTGTTTTGTCGGCTAA 734
Query 748 CCAGTTCTG-CAAGC-GTAGAGAGT-TCC-C-TGAACATCCTGATTACTTGTTTAATGAC 802
|||||| || | || | | ||| | ||| | | || || || ||| ||||| |
Sbjct 735 CCAGTTTTGTC--GCCGGAAAGACTATCCTCCTT--CA-CCAGAATACATGTTTTCCGGT 789
Query 803 AT-AGTAGACA-C-TAAAGAACATGA-TCCTACTGTCTCCGGAGGTGGAAG-TGTCATTA 857
| || ||| | | ||| | | || || | ||||| || |||||||| | | || |
Sbjct 790 -TCAGAAGAGAGCCTAAC-ACCG-GACTC-TGTTGTCTGCGCCGGTGGAAGCTCT-ATCA 844
Query 858 TTTCACCTTTGGGAAAGGTTCTCGCCGGACCAAACTATGAATCAGAGGGTCTCGTCACAG 917
||||||||||||||| ||| | || ||||||||||||||| ||||| ||| ||||||
Sbjct 845 TTTCACCTTTGGGAATCGTTTTAGCTGGACCAAACTATGAAGGAGAGGCTCTTATCACAG 904
Query 918 CTGATCTTGATCTTGGTGATATAGCAAGAGCCAAGTTAT-ACTTCGATGTGGTTGGACAT 976
||||||| |||||||| || |||||| |||||||||| | | ||||||||||| || |||
Sbjct 905 CTGATCTAGATCTTGGGGACATAGCACGAGCCAAGTT-TGATTTCGATGTGGTCGGGCAT 963
Query 977 TACTCAA-AGCCAGATATT-TTTAACTTGACCGTAAATGAGCACCCGAAGAAAC-CGGTT 1033
||||| | | || || | | |||| ||||| | ||| ||||| |||| |||| |||||
Sbjct 964 TACTCGAGA-CCTGA-AGTGTTTAGCTTGAACATAAGGGAGCATCCGA-GAAAAGCGGTT 1020
Query 1034 A 1034
|
Sbjct 1021 A 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5