BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44450.1 Length=583 Score E Sequences producing significant alignments: (Bits) Value Ahg484861 jgi|Araly1|484861|fgenesh2_kg.5__853__AT3G44450.1 872 0.0 > Ahg484861 jgi|Araly1|484861|fgenesh2_kg.5__853__AT3G44450.1 Length=578 Score = 872 bits (472), Expect = 0.0 Identities = 550/586 (94%), Gaps = 12/586 (2%) Strand=Plus/Plus Query 1 TATTTCTCTCTAAATCTCAACATTTTTATATATACAACACACACGTCGAAGCCAATaaaa 60 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1 TATTTCTCTCTAAATCTCAACATTTTTATATATACAACACACACGTTGAAACCAATAAAA 60 Query 61 atctctactacaaaagtaaaaataaagaaaagagttcaaaaTGAAGAACACCAATTTGCC 120 ||||||| | | || ||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 61 ATCTCTATTGC--AA--AAAAATACAGAAAAGAGTTCAAAATGAAGAACACCCATTTGCC 116 Query 121 TGAAGAAACCAAGGAACCAATCTCTCCAGGATCTTCTCACCGGAAACAAAACAAGACAGG 180 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 117 TGAAGAATCCAAGGAACCAATCTCTCCGGGATCTTCTCACCGGAAACAAAACAAGACAGC 176 Query 181 TAC-AAAGACATGTTTCCCGGAAACAACGGTGTTGTCAGGACGTGATAGGCTAAAGAGAC 239 || ||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct 177 CACGAAA-ACATGTTTGCCGGAAACAACGGTGTTGTCGGGACGTGAGAGGCTAAAGAGAC 235 Query 240 ATAGAGAAGAGGTTGCCGGAAAAGTTCCTATACCGGATAGTTGGGGAAAAGAAGGATTGC 299 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 236 ATAGAGAAGAGGTTGCCGGAAAAGTTCCTATACCGGAGAGTTGGGGAAAAGAAGGATTAC 295 Query 300 TTATGGGATGGATGGATTTTTCGACCTTCGACGCTGCTTTTACGTCTAGCCAGATTGTCT 359 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 296 TTATGGGATGGATGGATTTTTCGACCTTCGACGCTGCTTTTACTTCGAGCCAGATTGTTT 355 Query 360 CTGCTCGAGCTGCGTTAATGGCTGACTCAGGAGACGATGCCGG-AGCTAGAGGAAGTAGG 418 |||||||||||||| ||||||||||| | |||||||||||||| | |||||||||||||| Sbjct 356 CTGCTCGAGCTGCGCTAATGGCTGACGCCGGAGACGATGCCGGCA-CTAGAGGAAGTAGG 414 Query 419 CCTCAACGCCTTCGAGTTGAGAGTTCTTGTTGATTTCATTGTCTTAGAGAAATGTTTATG 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CCTCAACGCCTTCGAGTTGAGAGTTCTTGTTGATTTCATTGTCTTAGAGAAATGTTTATG 474 Query 479 -AAATAATAC-TCTCATCATGATTTTGAATGTTATTATTAGATACCTTATCTTCACATTG 536 ||||||||| |||| ||||||||||||||||| | |||||||||||||||||||||||| Sbjct 475 CAAATAATACCTCTCGTCATGATTTTGAATGTT-T-ATTAGATACCTTATCTTCACATTG 532 Query 537 ATTTTGAAATTTTGAACCATTGATACAATTATTCAAAGTTTCATAT 582 |||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 533 ATTTTGGAATTTTGAACTATTGATACAATTATTCAAAGTTTCATAT 578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21328974251 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5