BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44860.1 Length=1234 Score E Sequences producing significant alignments: (Bits) Value Ahg484885 jgi|Araly1|484885|fgenesh2_kg.5__877__AT3G44860.1 1602 0.0 > Ahg484885 jgi|Araly1|484885|fgenesh2_kg.5__877__AT3G44860.1 Length=1120 Score = 1602 bits (867), Expect = 0.0 Identities = 1041/1124 (93%), Gaps = 15/1124 (1%) Strand=Plus/Plus Query 25 AATCATCACAAGACCAGAGTTAAAAGAGAGACATGTCGACTTCATTCACAATGATCGGCG 84 ||| |||||||||| |||| || |||||| ||||||||||||| |||||||||||||||| Sbjct 2 AATTATCACAAGACAAGAGATAGAAGAGAAACATGTCGACTTCTTTCACAATGATCGGCG 61 Query 85 GTGAAGGTCCCAACAGTTACCGGGAACATTCGAAATACCAGGGAGCACTGGTTATAGCTG 144 ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 62 GTGAAGGTCGCAACAGTTACCAAGAACATTCGAAATACCAGGGAGCACTGGTTATAGCTG 121 Query 145 CAAAGGAAAAGATCAATGAAGCCATCTCCACGAAACTCGATATCGACTTTACTTCAAATC 204 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 122 CAAAGGAAAAGATCAATGAAGCCATTTCCACGAAACTCGATATCGACTTTACTTCAAATC 181 Query 205 TTGTTAACATAGCTGATTTTGGTTGTTCCTCTGGACCGAACACTTTCACCGCGGTACAAA 264 ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 182 TTGTTAACATAGCAGATTTTGGTTGTTCCTCTGGACCAAACACTTTCACAGCGGTACAAA 241 Query 265 CCTTAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTAATATTGAGGGAATCGAGT 324 || ||||||||||||||||||||||||||||||||||||||| || || |||||||||| Sbjct 242 CCATAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTACCATCGATGGAATCGAGT 301 Query 325 TCCAAGTTTTCTTCAATGATTCTTCAAACAACGATTTTAACACTCTCTTCAAGACACTTC 384 ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 302 TCCAAGTTTTCTTCAATGATTCTTCTAACAACGATTTCAACACTCTGTTCAAGACACTTC 361 Query 385 CTCCGGCTAGACTG-TATTTCGCAAGTGGAGTACCGGGTTCTTTCTTTGGTCGTGTTCTT 443 ||||||||||| | |||||||||| ||||| |||| |||||||||||||||||||||| Sbjct 362 CTCCGGCTAGAA-GATATTTCGCAACCGGAGTTCCGGCTTCTTTCTTTGGTCGTGTTCTT 420 Query 444 CCTAAAAATAGTCTTCATGTGGGAGTTTCTTCTTACTCACTCCATTTCGTATCCAAGGTT 503 |||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||| || Sbjct 421 CCTAGAAATAGTCTCCATGTGGGAGTTTCTTCTTATTCACTCCATTTCGTTTCCAAGATT 480 Query 504 CCCAAAGAAATCAAAGACCGTGACTCGCTTGTGTGGAACAAAGACATACATTGCTCCGGA 563 || ||||||||||||||||| || |||| ||| |||||| | |||||||||||||| ||| Sbjct 481 CCTAAAGAAATCAAAGACCGCGATTCGCCTGTTTGGAACCAGGACATACATTGCTCTGGA 540 Query 564 TCTTCAAAAGAAGTTGTGAAATTGTATCTCGGTCAATACAAGATCGACGTGGGAAGTTTC 623 ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 541 TCTTCAAAAGAAGTTACAAAATTGTTTCTCGATCAATACAAGATCGACGTGGGGAGTTTC 600 Query 624 TTGACCGCGAGAGCTCAAGAGCTCGTGTCCGGTGGATTACTATTGCTTCTTGGTTCATGT 683 |||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 601 TTGAACGCGAGAGCTCAAGAGCTCGTGTCTGGTGGATTGCTATTGCTTCTTGGATCATGT 660 Query 684 CGTCCAACTGGAGTTCAAATGTTTGAAACGGTTGAAGGCATGATGATTGATTTCATTGGA 743 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 661 CGTCCAAATGGAGTTCAAATGTTTGAAACGGTTGAAGGAATGATGATTGATTTCATTGGA 720 Query 744 AG-TTCTCTTAATGAAATTGCTAACCAGGGTCTCATAGATCAACAAAAGCTTGACACTTT 802 | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 721 -GCTTCTCTTAATGAAATTGCTAACCAGGGTCTAATAGATCAACAAAAGCTTGACACTTT 779 Query 803 TAAATTGCCTATCTATGCTCCA-AATGTGGATGAATTGAAGCAAATCATCGAGGATAACA 861 ||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||| Sbjct 780 TAAATTGCCTATCTACGCTCCACAA-GCGGATGAATTGAAGCAAATCATCGAGGATAACG 838 Query 862 AGTGTTTCACGATTGAGGCATTCGAAAAGATTAGCCACGCAAAGGGGGAGTATCCGTTAG 921 |||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||| Sbjct 839 GGTGTTTCACGGTTGAGGTATTCGAAAAAATTAGCCACGCAATGGGGGAGTATCCGTTAG 898 Query 922 ACCCCGAGTATTTGACG-TC-CGCGTTTAAGGTCACTGTTGGAGGATCAGTAGCTTCACT 979 ||||||||| ||||||| || | | ||||||||||| ||||||||||| ||||||||||| Sbjct 899 ACCCCGAGTTTTTGACGGTCTC-C-TTTAAGGTCACGGTTGGAGGATCTGTAGCTTCACT 956 Query 980 ATTTGGGCAAGATGGGATGGAGAAAACCTATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1039 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 957 ATTTGGGCAAGATGCGATGGAGAAAACATATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1016 Query 1040 GCTTCCTCAAATAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGGAA 1099 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1017 GCTTCCTCAATTAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGAAA 1076 Query 1100 CTGATTTC-ATGAT-A-T--AGATCTGTGAAATGAAATAAATCT 1138 |||||||| ||| | | | |||||||||||||||||||||||| Sbjct 1077 CTGATTTCCATGGTCAATGTAGATCTGTGAAATGAAATAAATCT 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46090606653 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5