BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44890.1 Length=920 Score E Sequences producing significant alignments: (Bits) Value Ahg484888 jgi|Araly1|484888|fgenesh2_kg.5__880__AT3G44890.1 1123 0.0 > Ahg484888 jgi|Araly1|484888|fgenesh2_kg.5__880__AT3G44890.1 Length=862 Score = 1123 bits (608), Expect = 0.0 Identities = 815/906 (90%), Gaps = 50/906 (6%) Strand=Plus/Plus Query 18 ACTACAACTGTGCGCTCTTGTTATCTCTGCTTTGAAGTGAAATCAGC-TTTGGCTATGGC 76 |||| |||||||||||| |||||||||||||||| |||| ||||| ||| || ||||| Sbjct 1 ACTAAAACTGTGCGCTC---TTATCTCTGCTTTGAACTGAACTCAGCATTT-GCAATGGC 56 Query 77 TTCTTCGACAGCTTTGTCTCTCTCATGGAGCTCCTCTCCTTGTTGGTCACACAGCTTCAA 136 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 57 TTCTTCTACAGCTTTGTCTCTCTCATGGAGTTCCTCTCCTTGTTGGTCACACAGCTTCAA 116 Query 137 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 176 Query 197 CCAGAAGAAAGCTAAGAAACTTCGCAAGGTAATTTTGAAAGAGGATGTGACGGATTTGGG 256 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 177 CCAGAAGAAAGCTAAGAAACTTCGAAAGGTAATCTTGAAAGAGGATGTGACGGATTTGGG 236 Query 257 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTAC 316 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 237 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTTTTGCCTAC 296 Query 317 TGGAAAGGCTCAGCTTATGACTCCACTTCTGCTCAAGGAATTGAAGATGGAAGACGAACG 376 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 297 GGGAAAGGCTCAGCTTATGACTCCTCTTCTGCTCAAGGAATTGAAGATGGAAGAAGAACG 356 Query 377 GATTGAGGCAGAGAAGCAAAGGGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCA 436 ||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 357 GATAGAGGCAGAAAAGCAAAGGGTGAAAGAAGAAGCACAACAACTGGCAATGGTATTTGA 416 Query 437 AACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC 496 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 417 GACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGTGGTAAAGGCAAACTGATATTTGGATC 476 Query 497 TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAA-AGGACATCGACA 555 ||||||||| |||||||||||||||||||||||| | ||||| |||| || |||| |||| Sbjct 477 TGTCACAGCACAAGACCTCGTCGACATCATCAAAGCGCAGCTTCAAAGAG-ACATAGACA 535 Query 556 AACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGAATACATAGCCGAACTCAAGC 615 ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 536 AACGCCTTGTCTCTCTCCCGGAAATACGTGAAACAGGAGAATACATAGCCGAACTCAAGC 595 Query 616 TTCACCCCGATGTCACTGCTCGAGTTAAGATCAATGTTTTCGCTAACTAAACCTTCAACG 675 |||| ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||| | Sbjct 596 TTCATCCCGATGTCACAGCTCGAGTTAGGATCAACGTTTTCGCCAACTAACCCTTCAATG 655 Query 676 ATTCAAGACTCCTACTGCATCCCAAGGAACGTA--TAGAGAGGGAAAAGAGAGTAGCCTC 733 |||||||||||||||||||||||||| |||| | ||||||||||||||||||| | ||| Sbjct 656 ATTCAAGACTCCTACTGCATCCCAAGAAACGCAGATAGAGAGGGAAAAGAGAGTCGTCTC 715 Query 734 TTGTGGTGAGGATTGAAGGTTGTGAAGTTTTTCCTT-TAGATTGTTTGATGCATTTGTAT 792 ||| ||| ||| | | |||||||| ||| ||||| |||||||||||||||| Sbjct 716 TTG-----AGG-TTG----T-G--AAGTTTTTTCTTGTAGATC-TTTGATGCATTTGTAT 761 Query 793 TTTTGCT-ATTTTTGGAATCTGGAAACGCTAAAAGTATAATATTCTCTTGCAAGTTATGA 851 ||||||| ||||||| ||||||||||| || || || | | | | || Sbjct 762 TTTTGCTTATTTTTG-AATCTGGAAAC---AA--GT-TA-T-T--------A--T-AT-- 799 Query 852 TATTTACTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 911 | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 800 T-TT--CTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 856 Query 912 AACACT 917 |||||| Sbjct 857 AACACT 862 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34120010715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5