BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45260.1
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937195 jgi|Araly1|937195|scaffold_501386.1 2025 0.0
Ahg470357 jgi|Araly1|470357|fgenesh2_kg.1__311__AT1G03840.2 351 8e-96
Ahg487085 jgi|Araly1|487085|fgenesh2_kg.6__219__AT5G03150.1 309 5e-83
> Ahg937195 jgi|Araly1|937195|scaffold_501386.1
Length=1393
Score = 2025 bits (1096), Expect = 0.0
Identities = 1308/1405 (93%), Gaps = 36/1405 (3%)
Strand=Plus/Plus
Query 129 TCAACTAAACCAATATCAGCATGATGATGCCAGATGATCATCATCCCCTCTCATTTCCCA 188
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TCAACTAAACCAATATCAACATGATGATGCCAGATGATCATCATCATCTCTCATTTCCCA 60
Query 189 GCTATGTCCTTCACCAAGAACACATCGCTCCAAATCCTAACCCTAACCCTAATCCTACCT 248
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 61 GCTATGTCCTTCACCAAGAACACATCACCCCAAATCCTAACCCTAACCCTAATCATACCT 120
Query 249 CCTCTAACTCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCTAACTCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAG 180
Query 309 TCATCGCTCTATCACCAAACTCCCTCATGACAACTAATCGATTCATCTGCGAGGTTTGCA 368
||||||||||||| ||||||||||||||| | || ||||||||||| |||||| ||||||
Sbjct 181 TCATCGCTCTATCGCCAAACTCCCTCATGGCGACAAATCGATTCATATGCGAGATTTGCA 240
Query 369 ACAAAGGATTTAAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCAT 428
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAAGGGTTTAAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCAT 300
Query 429 GGAAGCTAAAGCAAAGGACAAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGCTAAAGCAAAGGACAAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCCAG 360
Query 489 AGAAGA-CTTGCGTACACCATGACCCGGCCCGAGCCCTTGGTGACTTAACTGGAATTAAG 547
|||||| || |||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 361 AGAAGAGCT-GCGTACACCATGACCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAG 419
Query 548 AAGCATTTCAGCAGGAAACATGGTGA-AAAGAAGTGGAAATGTGACAAGTGTTCCAAGAA 606
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 420 AAGCATTTCAGCAGAAAACATGGTGAGAAA-AAGTGGAAATGTGACAAGTGTTCCAAGAA 478
Query 607 ATATGCTGTCATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAAAGAATACAG 666
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 ATATGCTGTCATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAGAGAATACAG 538
Query 667 ATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTG 598
Query 727 TGACGCTTTAGCTGAAGAGAGTGCTAGATTTGTCTCAGTTCCACCAGCACC--C-GCA-- 781
|||||| ||||||||||||| ||||||||| |||||||||||||||||||| | |||
Sbjct 599 TGACGCCTTAGCTGAAGAGAATGCTAGATTCGTCTCAGTTCCACCAGCACCAGCCGCACC 658
Query 782 ----------TATTTGAACAATGCCCTGGATGTGGAAGTCAACCATGGAAATATCAACCA 831
|||||||||||| ||| ||||| ||||||||||| |||||| ||||| ||
Sbjct 659 GGCACCCGCATATTTGAACAATCCCCCGGATGGGGAAGTCAACCTTGGAAACATCAATCA 718
Query 832 AAATCATCAACAACGACA-GCTTAATACTACTTCGTCACAATTGGACCAACCTGGTTTTA 890
|||||||||||||||||| | || ||||||| || || | |||||||||||| ||||| |
Sbjct 719 AAATCATCAACAACGACAAG-TTCATACTACATCTTCTCCATTGGACCAACCCGGTTTCA 777
Query 891 ATA-CCAATCGCAATAACATTGCCTTTTTGGGACAAACCTTACCAACCAACGTTTTTGCG 949
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATATCCA-TCGCAATGACATTGCCTTTTTGGGACAAACCTTACCAACCAACGTTTTTGCG 836
Query 950 TCCTCATCATCTCCATCACCTCGTAGTGCATCCGACTCCCTTCAAAATCTATGGCATTTA 1009
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 837 TCCTCATCATCCCCATCACCTCGTAGTGCATCCGACTCCCTTCAAAATTTATGGCATTTA 896
Query 1010 CAAGGACAATCATCTCACCAATGGCTTCTCAACGAAaacaacaacaacaacaacaacaTT 1069
|||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||
Sbjct 897 CAAGGACAATCATCTCACCAGTGGCTTCTCAATGAAAACAAGAACAACAACA------TT 950
Query 1070 CTCCAAAGGGGAATCTCCAAAAATCAAGAAGAACATGAGATGAAGAATGTGATTAGTAAT 1129
|||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 951 CTCCAAAGGGGAATCTCCAAGAATCAAGAAGAATGTGAGATCAAGAATGTGATTAGTAAT 1010
Query 1130 GGTTCTTTGTTCTCTTCGGAAGCACGAAACAACACTAATAATTATAACCAAAACGGTGGA 1189
|| ||||||||||||||||||||||| ||||||||||||| |||||||||| || |||||
Sbjct 1011 GGGTCTTTGTTCTCTTCGGAAGCACGCAACAACACTAATAGTTATAACCAAGACTGTGGA 1070
Query 1190 CAAATAGCATCAATGTCAGCCACGGCATTGCTACAAAAGGCAGCTCAAATGGGATCAAAG 1249
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAAAGAGCATCAATGTCAGCCACGGCATTGCTACAAAAGGCAGCTCAAATGGGATCAAAG 1130
Query 1250 AGATCATCATCA--A-GCTCAAGCAATAGCAAGACTTTTGGTCTAATGACCTCTATCTTC 1306
|||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1131 AGATCATCATCATCAAGCTCAAACAATAGCAAGACTTTTGGTCTAATAACCTCTATCTTC 1190
Query 1307 AACAACAAACAAGCAGAGAATATCAAAACTAAGGAAGTTGATGAAAGAGGTTTCACGAGA 1366
||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1191 AACAACAAACAAGGAGAGAATATCAAAACAAAGGAAGTTGATGAAAGAGGCTTCACGAGA 1250
Query 1367 GACTTTCTTGGTGTGGGAAGTCAACACCGTTCTTGGCCGTTATTGATGGTCAACCATAAT 1426
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1251 GACTTTCTTGGTGTGGGAAGTCAACACCGTCCTTGGCCATTATTGATGGTCAACCATAAT 1310
Query 1427 CTTCC-AGACTCGTCTCCTCCGGCCTCCACGGACGGCACACCAACCGCCGACATGAACCA 1485
||||| | ||||||||||| ||||| |||| ||||||||||||||||| |||||||||||
Sbjct 1311 CTTCCCA-ACTCGTCTCCTTCGGCCACCACTGACGGCACACCAACCGCGGACATGAACCA 1369
Query 1486 GTAA-TCTTGTATTGTTCATGTATA 1509
|||| |||||||||||||||| |||
Sbjct 1370 GTAAATCTTGTATTGTTCATG-ATA 1393
> Ahg470357 jgi|Araly1|470357|fgenesh2_kg.1__311__AT1G03840.2
Length=1530
Score = 351 bits (190), Expect = 8e-96
Identities = 395/492 (80%), Gaps = 21/492 (4%)
Strand=Plus/Plus
Query 262 CAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCTCTATC 321
||||| ||||||||| ||||| |||||||| |||||||| || || ||||| ||||||||
Sbjct 117 CAAGAAGAAGAGAAACCTCCCTGGAAATCCTGATCCAGAAGCCGAGGTCATAGCTCTATC 176
Query 322 ACCAAACTCCCTCATGACAACTAATCGATTCATCTGCGAGGT-T-TGCAACAAAGGATTT 379
||||| | || ||| | || ||||||||| | |||||| | | || | ||||| |||
Sbjct 177 CCCAAAGACACTTATGGCCACAAATCGATTCCTATGCGAGATATGTG-GA-AAAGGTTTT 234
Query 380 -AAGAGAGACCAGAACCTTCAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCTAAA 438
|| ||||||||||| || ||||||||||| |||| || ||||| ||||||||||||||
Sbjct 235 CAA-AGAGACCAGAATCTACAGCTTCACCGTCGAGGACACAACCTCCCATGGAAGCTAAA 293
Query 439 GCAAAGGACAAACAAGGAGCAAGTGAAGAAAA-AAGTGTACATCTGTCCAGAGAAGACTT 497
||| ||||||| ||| || |||| ||||||| |||||| | ||||||||||||| ||
Sbjct 294 GCAGAGGACAAGCAA--AG-AAGT-AAGAAAACGAGTGTATGTATGTCCAGAGAAGAGTT 349
Query 498 GCGTACACCATGACCCGGCCCGAGCCCTTGGTGA-CTTAACTGGAATTAAGAAGCATTTC 556
|||| ||||| | ||| | | || || ||||| ||| || || |||||||| |||||
Sbjct 350 GCGTCCACCACCATCCGACAAGGGCTCTCGGTGACCTT-ACCGGCATTAAGAAACATTTT 408
Query 557 AG-CAGGAAACATGGTGA-AAAGAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTG 614
| | |||||||||| || ||| |||||||| ||||| || || |||||| |||||| |
Sbjct 409 TGTC-GGAAACATGGCGAGAAA-AAGTGGAAGTGTGAGAAATGCGCCAAGAGATATGCAG 466
Query 615 T-CATGTCCGATTGGAAAGCTCATAGCAAGATTTGTGGTACTAAAGAATACAGATGTGAC 673
| || || |||||||| |||||| ||||| |||||| |||| ||| || ||||| |||
Sbjct 467 TCCA-ATCTGATTGGAAGGCTCATTCCAAGACTTGTGGGACTAGAGAGTATAGATGCGAC 525
Query 674 TGTGGTACCCTCTTT-TCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGC 732
|||||||| | ||| ||||||| ||| || ||||| |||||||||||||||||||||||
Sbjct 526 TGTGGTACAAT-TTTCTCCAGGAGAGACAGCTTCATTACACATAGAGCATTCTGTGACGC 584
Query 733 TTTAGCTGAAGA 744
|||||| |||||
Sbjct 585 TTTAGCAGAAGA 596
> Ahg487085 jgi|Araly1|487085|fgenesh2_kg.6__219__AT5G03150.1
Length=2006
Score = 309 bits (167), Expect = 5e-83
Identities = 394/501 (79%), Gaps = 26/501 (5%)
Strand=Plus/Plus
Query 257 TCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCT 316
|||||||||| ||||||||||| || || | ||||||||||||||| || |||||||||
Sbjct 353 TCAGCCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCT 412
Query 317 CTATCACCAAAC-TCCCTCATGACAACTAATC-GATTCATCTGCGAGGTTTGCAACAAAG 374
||||| || ||| | |||||| | || || | ||||| | |||||| | ||||||||||
Sbjct 413 CTATCGCC-AACAACACTCATGGCGAC-AAACAGATTCGTGTGCGAGATCTGCAACAAAG 470
Query 375 GATTT-AAGAGAGACCAGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAA 432
| ||| || || || ||||| ||| || || || || | ||||| || |||||||||||
Sbjct 471 GGTTTCAA-AGGGATCAGAA-CTTACAACTCCATCGCCGTGGCCACAATCTTCCATGGAA 528
Query 433 GCTAAAGCAAAGGA--CAAACAAGGA-GCAAGTGAAGAAA-AAAGTGTACATCTGTCCAG 488
||| |||| || || ||||||| || | | | || ||| ||||| ||||| || ||
Sbjct 529 GCTGAAGC-AACGATCCAAACAA-GAGGTGA-T-AAAAAAGAAAGTATACATATG-CCCT 583
Query 489 A-GAAGACTTGCGTACACCATGACCCGGCCCGAGCCCTTGGTGACTTAACTGGAATTAAG 547
| |||||||| ||||||||||| | | | |||||||| ||| | ||||| || |||
Sbjct 584 ATCAAGACTTGTGTACACCATGATGCTTCTAGGGCCCTTGGAGACCTCACTGGGATCAAG 643
Query 548 AAGCA-TTTCAGCAGGAAACATGGTGAAAAGAAGTGGAAATGTGACAAGTGTTCCAAGAA 606
|| || | | ||| | ||||| ||||||||||||||||| || || |||||||| |||||
Sbjct 644 AAACACTAT-AGCCGCAAACACGGTGAAAAGAAGTGGAAGTGCGAAAAGTGTTCTAAGAA 702
Query 607 ATATGCTG-TCATGTCCGATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAAAGAATAC 664
||| |||| ||| ||| |||||||| || ||| || || | |||||||||| || ||
Sbjct 703 ATACGCTGTTCA-GTCTGATTGGAAGGCACAT-GCGAAAACTTGTGGTACTCGCGAGTAT 760
Query 665 AGATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTC 724
| |||||||||||| || | || |||||||||||||||||||||||||||||||| |||
Sbjct 761 AAATGTGACTGTGGCACGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTC 820
Query 725 TGTGACGCTTT-AGCTGAAGA 744
|| ||||| || | |||||||
Sbjct 821 TGCGACGCATTGA-CTGAAGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70809765455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5