BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45555.1 Length=642 Score E Sequences producing significant alignments: (Bits) Value Ahg937230 jgi|Araly1|937230|scaffold_501421.1 828 0.0 Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 407 5e-113 > Ahg937230 jgi|Araly1|937230|scaffold_501421.1 Length=724 Score = 828 bits (448), Expect = 0.0 Identities = 548/597 (92%), Gaps = 4/597 (1%) Strand=Plus/Plus Query 1 ATGGAAACAATAGATTGTGAAATCAGCTTACTTGTGGATCCTGAGACTTGCAGTATATGT 60 |||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 21 ATGGAAACAAAAGATTGTGAAATCAGCTTACTTGTGGACCCTGAGACTTGTAGGATATGT 80 Query 61 TTCAATGATGATTTCAAATCTGAGCAAATGTATTATGTTGCTTTATGCAATCATAAATTC 120 ||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 81 TTCGATGATAATTTCAAAGCTGAGCAGATGTATTATGTTGCTTTATGCAATCATAAATTT 140 Query 121 TGTTTGGAATGCATGAAACGATATATAGAAGTGAGGCTTCTAGAGGGAACTGTACTGATA 180 |||||||||||||||||||||| |||||||| | |||||| ||||||||||||| |||| Sbjct 141 TGTTTGGAATGCATGAAACGATTTATAGAAGACAAGCTTCTCGAGGGAACTGTACCGATA 200 Query 181 TGTCCTTATTATCAATGTGAGTCTAAGCTGACTCTTAAAAGTTGTTTTCATATTTTGACA 240 ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| Sbjct 201 TGTCCTTATTATCAATGTGAGTCTAAGCTGACTCTTAGAAGTTGTGTTCATTTTTTGACA 260 Query 241 TCTAAACTAAAAGCGATGTGGGAACAAAAGATTGAAGAGGAATCCATTCCAGTAACGGAG 300 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 261 TCTAAACTAAAAGCGATGTGGGAACAACGGATTGAAGAGGAATCGGTTCCAGTAACGGAG 320 Query 301 AGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAATCGAGCTCTCTAAA 360 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 321 AGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAACCAAGCTCTCTAAA 380 Query 361 TCTACCTT--AGAAGATGGATTTGTGAGATGCTTCCAATGCGGGGAGCGCTTTTGCATTA 418 | || || ||||||||||| | |||||||||||||||||||||||||||||||||| | Sbjct 381 TTTA--TTGAAGAAGATGGATCTATGAGATGCTTCCAATGCGGGGAGCGCTTTTGCATGA 438 Query 419 ACTGCAAAGTTTCATGGCAAAGTAACTTGTCATGTGACAATTGCAAGAAATTGGGTAATA 478 |||||||||||| ||||| |||| ||||| |||||| ||| |||| |||||||||| Sbjct 439 ACTGCAAAGTTTTGTGGCATAGTAGTTTGTCGTGTGACGATTACAAGGTTTTGGGTAATA 498 Query 479 ATCCTACATCAGATGATAAGATGCTAAAAGTTCTTGCAAATGAGAAAAAGTGGCGCCAAT 538 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 499 ATCCTACATCAGATGATAAGATGCTAAAAGTTCTTGCAAATGAGAATCTGTGGCGTCAAT 558 Query 539 GTGAAAAGTGCCAACATATGATCAAACTTTCGGAAGGATGCATCCATGTAACTTGCA 595 |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 559 GTGAAAAGTGCCAACACATGATCGAACTTTCGGAAGGATGCATCCATGTAACTTGCA 615 > Ahg897355 jgi|Araly1|897355|Al_scaffold_0005_1321 Length=819 Score = 407 bits (220), Expect = 5e-113 Identities = 494/623 (79%), Gaps = 31/623 (5%) Strand=Plus/Plus Query 1 ATGGAAACAATAGATTGTGAAATCAGCTTAC-T-T--GTGGATC--CTG-AGACTTGCAG 53 ||||||||||||| || |||||||||| ||| | | | |||| | |||||||||| Sbjct 196 ATGGAAACAATAGTTTCTGAAATCAGCATACATATACCT-GATCAGAAGAAGACTTGCAG 254 Query 54 TATATGTTTCAATGATGATTTCAAATCTGAGCAAATGTATTATGTTGCTTTATGCAATCA 113 ||| |||| | ||||| | ||| || ||||||| |||| || | ||| ||||||| ||| Sbjct 255 TATTTGTTCCGATGATAACTTCGAACCTGAGCAGATGTTTTCTATTGATTTATGCGGTCA 314 Query 114 TAAATTCTGTTTGGAATGCATGAAACGATATATAGAAGTGAGGCTTCTAGAGGGAACTGT 173 | |||||||| |||| |||||||||||| |||||||||||||||| || | |||| ||| Sbjct 315 TGAATTCTGTGTGGAGTGCATGAAACGACATATAGAAGTGAGGCTACTCGCGGGAGGTGT 374 Query 174 ACTGATATGTCCTTATTATCAATGTGA-GTCTAAGCTGACTCTTAAAAGTTGTTTTC-AT 231 || || ||||||| |||||||||| | |||||| || |||||| ||| || | || || Sbjct 375 ACCGAGATGTCCTCATTATCAATG-CAGGTCTAAACTTACTCTTGGAAGCTG-TGTCAAT 432 Query 232 ATTTTGACATCTAAACTAAAAGCGATGTGGGAAC-AAAAGATTGAAGAGGAATCCATTCC 290 |||||||||||||||||||||| |||||||||| || | || || |||||||| ||| | Sbjct 433 CTTTTGACATCTAAACTAAAAGCAATGTGGGAACGAATA-ATCGACGAGGAATCGATT-C 490 Query 291 A-GTAACGGAGAGATTTTATTGCCCGAACCCGAGGTGCTCGGCTTTAATGTCGAAAATCG 349 | || |||| ||| ||||||| || |||||||||||||| || ||||||||| || | Sbjct 491 ATGTGGCGGACAGAGTTTATTGTCCAAACCCGAGGTGCTCAGCCTTAATGTCGGTAACCA 550 Query 350 AGCTCT----CT-AAA-TCTACCT-TAGAAGATG-GA-TTTGTG-AGATGCTTCCAATGC 399 |||||| || ||| |||| || |||||||| | | || | || || ||| ||||| Sbjct 551 AGCTCTCAAACTCAAACTCTA-CTAAAGAAGATGTAACTATGAGAAGCTGTTTCAAATGC 609 Query 400 GGGGAGCGCTTTTGCATTAACTGCAAAGTTTCATGGCAAAGTAACTTGTCATGTGACAAT 459 | || | |||||| || | |||||||||| | ||||| || |||||||| || || || Sbjct 610 AGTGAACCCTTTTGTATCACCTGCAAAGTTCCGTGGCATAGCAACTTGTCGTGCAACGAT 669 Query 460 TGCAAGAAATTGGGT-AATAATCCTACATCAGATGATA-AGATGCTAAAAGTTCTTGCAA 517 | ||||| ||||||| | ||||||||| ||||||||| | | | | |||| ||| ||| Sbjct 670 TACAAGAGATTGGGTCCA-AATCCTACAGCAGATGATATA-AAGATGAAAGCTCTAGCAT 727 Query 518 ATGAGAAAAAGTGGCGCCAATGTGAAAAGTGCCAACATATGATCAAACTTTCGGAAGGAT 577 || |||||| |||||| ||||||||||| || ||||| || ||| ||||||||||||||| Sbjct 728 ATAAGAAAATGTGGCGTCAATGTGAAAATTGTCAACACATAATCGAACTTTCGGAAGGAT 787 Query 578 GCATCCATGTAACTTGCATGTAT 600 |||||||||||||||||| |||| Sbjct 788 GCATCCATGTAACTTGCAGGTAT 810 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23521839789 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5