BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45600.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937235 jgi|Araly1|937235|scaffold_501426.1 1426 0.0
Ahg358240 jgi|Araly1|358240|fgenesh1_pg.C_scaffold_8002027 708 0.0
Ahg484942 jgi|Araly1|484942|fgenesh2_kg.5__934__AT3G45590.1 137 1e-31
> Ahg937235 jgi|Araly1|937235|scaffold_501426.1
Length=899
Score = 1426 bits (772), Expect = 0.0
Identities = 846/883 (96%), Gaps = 0/883 (0%)
Strand=Plus/Plus
Query 93 AAGCTATGAGAACAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCT 152
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAGCTATGAGATCAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCT 75
Query 153 CAATACCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCTAACTCCACCGACTGTT 212
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 76 CAATCCCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCAAACTCCACCGACTGTT 135
Query 213 TAAGATTCCTTCAATGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAG 272
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TAAGATTCCTCCAGTGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAG 195
Query 273 CTGGATTCGCTGGAGCTTGTTACCGTAACAAGTTCCTTATGTGGCTATACCTAGTAGTCA 332
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 196 CAGGATTCGCTGGAGCTTGTTACCGTAACAAGTTCCTTATGTGGCTATACCTAGTTGCCA 255
Query 333 TGCTTCTCATCATCGCTGCTCTTATCGGTTTCATCATCTTCGCTTACGCGGTTACAGATA 392
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 256 TGCTTCTTATCATCGCCGCTCTCATCGGTTTCATCATCTTCGCTTACGCGGTTACCGATA 315
Query 393 AAGGATCCGGTCGAACCGTACTTAACCGGGGTTATCTTGACTATTATCTTGAAGATTACT 452
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 316 AAGGATCCGGTCGAACCGTGCTTAACCGGGGTTATCTTGACTATTATCTTCAAGATTACT 375
Query 453 CTGGTTGGTTGAAAGATCGAGTTTCTGATGATAGCTATTGGGGTAAAATTAGTTCTTGTC 512
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 376 CTGGTTGGTTGAAAGATCGAGTCTCTGATGATAGTTATTGGGGTAAAATAAGTTCTTGTC 435
Query 513 TTAGAGATTCTGGTGCTTGTAGAAAGATTGGAAGAAATTTTAATGGTGTACCTGAAACTG 572
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 436 TTAGAGATTCTGGTGCTTGTAGGAAGATTGGAAGGAATTTTAATGGTGTCCCTGAAACTG 495
Query 573 CTGATATGTTCTTCCTTAGAAGACTTAGCCCTGTTGAGTCCGGTTGTTGCAAGCCACCAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTGATATGTTCTTCCTTAGAAGACTTAGCCCTGTTGAGTCCGGTTGTTGCAAGCCACCAA 555
Query 633 CAGATTGCGGTTTTTCATATGTGAATGAGACCGGATGGGACACGAGAGGAGGGATGATAG 692
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 556 CAGATTGTGGTTTTTCATATGTCAATGAGACCGGATGGGACACGAGAGGAGGGATGATAG 615
Query 693 GACCGAACCAGGACTGTATGGTGTGGAGCAACGACCAGAGCATGCTCTGTTATCAGTGTA 752
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 616 GACCGAACCAGGACTGTATGGTGTGGAGCAATGACCAGAGCATGCTCTGTTATCAGTGTA 675
Query 753 GTTCTTGTAAAGCTGGTGTTCTTGGGAGTTTGAAGAAGAGTTGGAGAAAAGTATCGGTGA 812
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 676 GTTCTTGTAAAGCTGGTGTTCTTGGGAGCTTGAAGAAGAGCTGGAGAAAAGTATCGGTGA 735
Query 813 TCAACATTGTGGTACTTATCATTCTAGTTATCTTTTACGTTATCGCTTATGCAGCTTATA 872
| ||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct 736 TTAACATCGTGGTACTTATCATTCTCGTTATCTTCTATGTTATCGCTTATGCTGCTTATA 795
Query 873 GGAATGTCAAGAGGATCGATAACGATGAACCGGCTGGTGAAGCTAGGATGACAAAATCAC 932
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 796 GGAATGTCAAGAGGATTGATAACGATGAGCCGGCTGGTGAAGCTAGGATGACAAAATCAC 855
Query 933 ATCCTAGTCATTTCCATCTTTGATCAAAATTTGGAACAGTTCa 975
| |||||||||||||| ||||||||||||||||| | ||||||
Sbjct 856 AACCTAGTCATTTCCACCTTTGATCAAAATTTGGTATAGTTCA 898
> Ahg358240 jgi|Araly1|358240|fgenesh1_pg.C_scaffold_8002027
Length=858
Score = 708 bits (383), Expect = 0.0
Identities = 707/862 (82%), Gaps = 28/862 (3%)
Strand=Plus/Plus
Query 98 ATGAGAACAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCTCAATA 157
|||||| | ||||| | || |||||| | || |||||| ||||||||||||| || ||
Sbjct 1 ATGAGATCGAGCAATAACCTTATAGGTCTCGTAAACTTCTTCACTTTCCTCCTTTCGATT 60
Query 158 CCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCTAACTCCACCGACTGTTTAAGA 217
|| ||||||||||||||||||||| | |||||| |||||||||| |||||||| | |||
Sbjct 61 CCGATCCTCGGCGGTGGAATATGGCTGAGCAGCAGAGCTAACTCAACCGACTGCCTCAGA 120
Query 218 TTCCTTCAATGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAGCTGGA 277
||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCCTCCAGTGGCCACTCATAATCATCGGAATCTCAATCATGGTCGTATCTTTAGCCGGA 180
Query 278 TTCGCTGGAGCTTGTTACC-GTAACAAGTTCCTTATGTGGCTATACCTAGTAGTCATGCT 336
|||||||||||||||||| | ||||||||||| |||||||| ||||| | | |||| |
Sbjct 181 ATCGCTGGAGCTTGTTACCAG-AACAAGTTCCTCATGTGGCTTTACCTTTTCGCCATG-T 238
Query 337 TC-TCATCATCGCTGCTCTTATCGGTTTCATCATCTTCGCTTACGCGGTTACAGATAAAG 395
|| | | |||||||||||||| || |||||||||||||||||||| ||||| |||||||
Sbjct 239 TCTTTGTAATCGCTGCTCTTATAGGATTCATCATCTTCGCTTACGCTGTTACTGATAAAG 298
Query 396 GATCCGGTCGAACCGT-ACTTAACCG-GGGTTATCTTGACTATTATCTTGAAGATTACTC 453
| || || || || | | ||||| || |||||||| |||||||| | ||||| ||
Sbjct 299 GCTCAGGCCGGTTTGTGA-TGAACCGTCGG-TATCTTGATTATTATCTCCATGATTATTC 356
Query 454 TGGTTGGTTGAAAGATCGAGTTTCTGATGATAGCTATTGGGGTAAAATTAGTTCTTGTCT 513
||||||||||| ||||| || | ||| || | |||||| | ||||| | || ||| |
Sbjct 357 CGGTTGGTTGAAGGATCGTGTCACGGATAATGGATATTGGAATGAAATTGGATCGTGTGT 416
Query 514 TAGAGATTCTGGTGCTTGT-AGAAAGATTGGAAGAAATTTTAATGGTGTACCTGAAACTG 572
|||||||||||| | |||| || ||||| ||||| |||| |||||||| |||||||||
Sbjct 417 TAGAGATTCTGGAGTTTGTAAG-AAGATACGAAGAGATTTAAATGGTGTTCCTGAAACTC 475
Query 573 CTGATATGTTCTTCCTT-AG-AAGACTTAGC-CCTGTTGAGTCCGGTTGTTGCAAGCCAC 629
|| | ||||| || ||| || ||| ||| | |||||||||||||| ||||||||||| |
Sbjct 476 CTCAGATGTT-TTACTTCAGAAAG-CTT-TCTCCTGTTGAGTCCGGATGTTGCAAGCCGC 532
Query 630 CAACAGATTGCGGTTTTTCATATGTGAATGAGACCGGATG-GGA--CACGAGAGGAGGGA 686
|||||||||| || | | | || |||||||||| | | || ||| | || |||||| |
Sbjct 533 CAACAGATTGTGGGTATACGTACGTGAATGAGA-CTG-TGTGGATTC-CGGGAGGAGAAA 589
Query 687 TGATAGGACCGAACCAGGACTGTATGGTGTGGAGCAACGACCAGAGCA-TGCTCTGTTAT 745
|| | |||||||||| |||||||||| |||||| ||| |||||||| | | ||||||||
Sbjct 590 TGGTGGGACCGAACCCGGACTGTATGTTGTGGAACAATGACCAGAG-ACTACTCTGTTAC 648
Query 746 CAGTGTAGTTCTTGTAAAGCTGGTGTTCTTGGGAGTTTGAAGAAGAGTTGGAGAAAAGTA 805
|| || || ||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 649 CAATGCAGCTCTTGTAAAGCTGGTGTTCTTGGTAGCTTGAAAAAGAGTTGGAGAAAAGTA 708
Query 806 TCGGTGATCAACATTGTGGTACTT-ATCATTCTAGTTATCTTTTACGTTATCGCTTATGC 864
|||||||||||||||||||| ||| ||||| || |||||||| || || ||||| |||||
Sbjct 709 TCGGTGATCAACATTGTGGT-CTTGATCATACTTGTTATCTTCTATGTCATCGCCTATGC 767
Query 865 AGCTTATAGGAATGTCAAGAGGATCGATAACGATGAACCGG-CTGGTGAAGCTAGGATGA 923
|||||| ||||| | |||||||| ||||| || ||||| | | ||||| || |||||||
Sbjct 768 AGCTTACCGGAATATTAAGAGGATTGATAATGACGAACCCGTC-GGTGAGGCAAGGATGA 826
Query 924 CAAAATCACATCCTAGTCATTT 945
| ||||| ||||||||||||||
Sbjct 827 CCAAATCTCATCCTAGTCATTT 848
> Ahg484942 jgi|Araly1|484942|fgenesh2_kg.5__934__AT3G45590.1
Length=806
Score = 137 bits (74), Expect = 1e-31
Identities = 91/99 (92%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 1077 GGAATCGGAACCTAGTTCATTTTATATTCTTCTAGAAATCAGCATTACAACAAGAC--TT 1134
|||||| |||||||||||||||||| ||| ||||||||||||||||||||||| || ||
Sbjct 806 GGAATCAGAACCTAGTTCATTTTATCTTCCTCTAGAAATCAGCATTACAACAATACAATT 747
Query 1135 GTTAACATGTAAGCTTAATCATGTTCTGGTTTCATCTTC 1173
||||| | |||||||||||||||||||||||||||||||
Sbjct 746 GTTAAAACGTAAGCTTAATCATGTTCTGGTTTCATCTTC 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5