BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45620.2
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937238 jgi|Araly1|937238|scaffold_501429.1 2109 0.0
Ahg948120 jgi|Araly1|948120|scaffold_800007.1 584 7e-166
> Ahg937238 jgi|Araly1|937238|scaffold_501429.1
Length=1488
Score = 2109 bits (1142), Expect = 0.0
Identities = 1283/1352 (95%), Gaps = 6/1352 (0%)
Strand=Plus/Plus
Query 256 GGGAGAGTGAAGAAACTAGATCTTTACGGGAAGTTAAATGGTCATGAGGGATGTGTGAAT 315
|||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 140 GGGATAGTGAAGAAACTCGATCTTTACGGGAAGTTAAATGGTCACGAGGGGTGTGTGAAT 199
Query 316 GCAGTGGAGTTCAATTCGACTGGCGATGTTCTTGTTTCCGGGTCCGATGATCGACAAATC 375
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 200 GCCGTGGAGTTCAATTCGAGTGGCGATGTTCTTGTTTCGGGGTCCGATGATCGACAAATC 259
Query 376 ATGCTCTGGAACTGGTTGAGTGGAAGCAGGA-AGTTGTCGTATCCCTCTGGCCATTGTGA 434
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 260 ATGCTCTGGAACTGGTTGAGTGGAAGCAGGACA-TTGTCGTATCCCTCTGGACATTGTGA 318
Query 435 AAATGTGTTTCAGACTAAGTTCATACCTTTTACGGATGACAGGACAATCATAACATCTGG 494
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 319 AAATGTGTTTCAGACTAAGTTCATACCTTTTACGGATGACCGGACAATCATAACATCTGG 378
Query 495 TGCTGATGGACAAGTAAGACTTGGTCAGATCCTAGAAAATGGTAAAGTGGAGACGAAAAG 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 379 TGCTGATGGACAAGTAAGACTTGGTCAGATCCTAGAAAATGGTAAAGTGGAGACAAAAAG 438
Query 555 ACTAGGGAGGCATCACGGTCGCGTGTACAAGCTTGCTGTTTTGCCTGGAGATCCTAACGT 614
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 439 ACTAGGGAGGCATCACGGTCGCGTGTACAAGCTTGCTGTATTGCCTGGAGATCCTAATGT 498
Query 615 ATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAACATTTTGATATACGCAGCAACAGTGC 674
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 499 ATTCTACAGCTGTGGTGAAGATGGGTTTGTTCAACATTTTGATATACGAAGCAATAGTGC 558
Query 675 TACTATGGTTTTGTATTCCTCTCCGTTCACACAAGGATGCAGGAGACATCACTCCAGCAG 734
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 559 CACTATGGTTTTGTATTCCTCTCCGTTCACACAAGGCTGCAGGAGACATCACTCCAGCAG 618
Query 735 TAGGATCAGATTGAATTCTATTGCGATAGATCCGAGGAATTCATATTATCTTGCGGTTGG 794
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 619 TAGGATAAGATTGAATTCTATTGCGATAGATCCGAGGAATTCATATTATCTTGCAGTTGG 678
Query 795 GGGTTCTGATGAATATGCACGAGTCTACGATACTAGAAGAGTACAATTAGCTCCAGTATG 854
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 679 GGGTTCTGATGAATATGCACGAGTCTATGACACTAGAAGAGGACAATTAGCTCCAGTATG 738
Query 855 TCGCCACGTCTTACCAGACGCTCCTGTGAACACTTTCTGTCCTCGTCATCTCCGGGAAAC 914
|||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCGCCATGTGTTACCAGATGCGCCTGTGAACACTTTCTGTCCTCGTCATCTCCGGGAAAC 798
Query 915 CAACAGTGTTCACATCACGGGATTAGCATATTCCAAAGCTGGAGAACTATTGGTCTCTTA 974
||||||||||||| |||| || || ||||||||||||||||||||||| ||||||||||
Sbjct 799 CAACAGTGTTCACGTCACAGGTTTGGCATATTCCAAAGCTGGAGAACTGCTGGTCTCTTA 858
Query 975 CAACGACGAGCTTATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCTGTTTC 1034
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 859 CAACGACGAGCTCATTTATCTGTTTGAGAAGAACATGGGTTATGGTCCGTCGCCGGTTTC 918
Query 1035 TGTCTCTCCTGAGAAACTGCAAGAAATGGAAGAACCACAGGTGTATATAGGTCACCGCAA 1094
| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 919 TATCTCTCCTGAGAAACTGCAAGTAATGGAAGAACCACAGGTGTATACAGGTCACCGCAA 978
Query 1095 TGCACAAACAGTGAAAGGAGTGAACTTCTTT-GGTCCAAATGATGAATATGTCACGAGTG 1153
||||||||||||||| |||||||| || ||| |||||||||||||||||||| |||||||
Sbjct 979 TGCACAAACAGTGAAGGGAGTGAAATT-TTTCGGTCCAAATGATGAATATGTGACGAGTG 1037
Query 1154 GTTCAGACTGCGGTCACATTTTTATATGGAAGAAGAAAGGAGGTAAGCTTGTCCGAGCTA 1213
||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||
Sbjct 1038 GTTCAGACTGCGGTCACATCTTTATATGGAAGAAGAAAGGGGGTAAGCTTGTTCGGGCTA 1097
Query 1214 TGGTGGGTGATAGACGAGTGGTGAATCAGTTAGAGTCTCACCCACACATACCGTTACTTG 1273
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1098 TGGTGGGTGATAGACGAGTGGTGAATCAGCTAGAGTCTCACCCACACATACCGTTACTTG 1157
Query 1274 CATCCTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCAATGTCAAATGATGTTCTTT 1333
|||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1158 CATCTTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCTATGTCAAACGAAGTTCTTT 1217
Query 1334 CCCTGCCTGAAAAGATCGATAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAAT 1393
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1218 CCCTGCCTGAAAAGATCGAAAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAGT 1277
Query 1394 CGAGGGTAACACTGACTCCTGATGTAATTATGCATGTTCTTAGGCTACAGAGACGTCAGA 1453
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1278 CGAGGGTGACACTGACTCCTGATGTAATTATGCATGTTCTCCGGCTACAGAGACGTCAGA 1337
Query 1454 CGTCGGCTTTTACAGAGAGGAGATACGTTTCAACTGACATTGGCAGTGATGAAGGAAATG 1513
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1338 CGTCGGCTTTCACAGAGAGAAGATACGTTTCAACTGATATTGGCAGTGATGAAGGAAATG 1397
Query 1514 ATGCTCGCTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGACAGAGAATGTA 1573
| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1398 ACGCTCACTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGAAAGAGAATGTA 1457
Query 1574 CTGTAAGCTGAGTCCTCTCAACTAGTGTAATA 1605
| |||||||||||| | | |||||||||||||
Sbjct 1458 CGGTAAGCTGAGTC-T-TAAACTAGTGTAATA 1487
Score = 241 bits (130), Expect = 2e-62
Identities = 137/140 (98%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 15 GTAAAGAC-TTGAACTTAAAACCATGGCGAGACCGAGACGAAGAAACACAGAGATCGGTG 73
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAAGACTTTGAACTT-AAACAATGGCGAGACCGAGACGAAGAAACACAGAGATCGGTG 59
Query 74 ATGGCTTCACAGAGATATTCAACAGAGAGATTGGTTTCTCTCATCCAATCACCATCTCTC 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATGGCTTCACAGAGATATTCAACAGAGAGATTGGTTTCTCTCATCCAATCACCATCTCTC 119
Query 134 GTCGAATCTCCGCTTCTGAG 153
||||||||||||||||||||
Sbjct 120 GTCGAATCTCCGCTTCTGAG 139
> Ahg948120 jgi|Araly1|948120|scaffold_800007.1
Length=1019
Score = 584 bits (316), Expect = 7e-166
Identities = 402/444 (91%), Gaps = 3/444 (1%)
Strand=Plus/Plus
Query 1157 CAGACTGCGGTCACATTTTTATATGGAAGAAGAAAGGAGGT-AAGCTTGTCCGAGCTATG 1215
|||||||||||||||| |||||||||||||||||||| ||| |||||||| || ||||||
Sbjct 570 CAGACTGCGGTCACATATTTATATGGAAGAAGAAAGGGGGTAAAGCTTGTGCGGGCTATG 629
Query 1216 GTGGGTGATAGACGAGTGGTGAATCAGTTAGAGTCTCACCCACACATACCGTTACTTGCA 1275
||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||
Sbjct 630 GTGGGTGATAGACGAGTGGTGAATCAGCTCGAGTTTCACCCACACATACCGTTTTTTGCA 689
Query 1276 TCCTGCGGGATTGAAAAGAGCGTTAAGCTCTGGACGCCAATGTCAAATGATGTTCTTTCC 1335
||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||
Sbjct 690 TCCTGCGGGATTGAAAAGAGCGTCAAGCTCTGGACACCATTGTCAAACGATGTTCTTTCT 749
Query 1336 CTGCCTGAAAAGATCGATAAGGTGATGGAATTGAACAGGGTGGGGAGAGAAGACCAATCG 1395
||||||||||| ||||| |||||| |||||| |||| | ||||||||||||||||| |||
Sbjct 750 CTGCCTGAAAACATCGAAAAGGTGGTGGAATCGAACCGAGTGGGGAGAGAAGACCAGTCG 809
Query 1396 AGGGTAACACTGACTCCTGATGTAATTATGCATGTTCTTAGGCTACAGAGACGTCAGACG 1455
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 810 AGGGTGACACTGACTCCTGATGTAATTATGCATGTTCTCCGGCTACAGAGACGTCAGACA 869
Query 1456 TCGGCTTTTACAGAGAGGAGATACGTTTCAACTGACATTGGCAGTGATGAAGGAAATGAT 1515
|| ||||||||||| || |||||||||||||||||||| | ||||||||||||||||||
Sbjct 870 TCTGCTTTTACAGAAAGAAGATACGTTTCAACTGACATCGACAGTGATGAAGGAAATGAA 929
Query 1516 GCTCGCTTCATTGCAAGCTTAGTAGCCAACGACGATGAGTCTTCAGACAGAGAATGTACT 1575
|||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 930 GCTCATTTCATTGCAAGCTTAGAAGCCAAGGACGATGAGTCTTCAGAAAGAGAATGTACT 989
Query 1576 GTAAGCTGAGTCCTCTCAACTAGT 1599
|| |||| |||| | |||| ||||
Sbjct 990 GTCAGCTAAGTC-T-TCAAGTAGT 1011
Score = 542 bits (293), Expect = 4e-153
Identities = 325/341 (95%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 469 GATGACAGGACAATCATAACATCTGGTGCTGATGGACAAGTAAGACTTGGTCAGATCCTA 528
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 69 GATGACCGGACGATCATAACATCTGGTGCTGATGGACAAGTAAGACTTGGTCAAATCCTA 128
Query 529 GAAAATGGTAAAGTGGAGACGAAAAGACTAGGGAGGCATCACGGTCGCGTGTACAAGCTT 588
|||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||||
Sbjct 129 GAAAATGGTAAAGTGGAGACAAAAAGGCTAGGGAGGCACCATGGTCGTGTGTACAAGCTT 188
Query 589 GCTGTTTTGCCTGGAGATCCTAACGTATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAA 648
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 189 GCTGTTTTGCCTGGAGATCCTAATGTATTCTACAGCTGTGGTGAAGATGGTTTTGTTCAA 248
Query 649 CATTTTGATATACGCAGCAACAGTGCTACTATGGTTTTGTATTCCTCTCCGTTCACACAA 708
||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 249 CATTTTGATGTACGAAGCAACAGTGCCACTATGGTTTTGTATTCCTCTCCGTTCACACAA 308
Query 709 GGATGCAGGAGACATCACTCCAGCAGTAGGATCAGATTGAATTCTATTGCGATAGATCCG 768
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 309 GGCTGCAGGAGACATCACTCCAGTAGTAGGATCAGATTGAATTCTATTGCGATAGATCCA 368
Query 769 AGGAATTCATATTATCTTGCGGTTGGGGGTTCTGATGAATA 809
|||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 AGGAATTCATATTATCTTGCGGTTGGGGGTTCCGATGAATA 409
Score = 244 bits (132), Expect = 1e-63
Identities = 152/162 (94%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 913 ACCAACAGTGTTCACATCACGGGATTAGCATATTCCAAAGCTGGAGAACTATTGGTCTCT 972
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 411 ACCAACAGTGTTCACATCACGGGATTGGCATATTCCAAAGCTGGAGAACTACTGGTCTCT 470
Query 973 TACAACGACGAGCTTATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCTGTT 1032
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 471 TACAATGACGAGCTCATTTATCTGTTTGAGAAGAACATGGGTTATGGTTCGTCGCCGGTG 530
Query 1033 TCTGTCTCTCCTGAGAAACTGCAAGAAATGGAAGAACCACAG 1074
||| | ||||||||||| || |||||||||||||||||||||
Sbjct 531 TCTATATCTCCTGAGAATCTACAAGAAATGGAAGAACCACAG 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65553311645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5