BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45640.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484948 jgi|Araly1|484948|fgenesh2_kg.5__940__AT3G45640.1 2364 0.0
> Ahg484948 jgi|Araly1|484948|fgenesh2_kg.5__940__AT3G45640.1
Length=1473
Score = 2364 bits (1280), Expect = 0.0
Identities = 1412/1476 (96%), Gaps = 8/1476 (1%)
Strand=Plus/Plus
Query 1 ACCGCGAAAACTCATCTCTGCTCAATCCTCAATCTCAGTCTCTCTGTTGACTC-CGACTG 59
||||||||||||||||||||||||||||||| | ||||||||| | ||||||| |||||
Sbjct 1 ACCGCGAAAACTCATCTCTGCTCAATCCTCAGTTTCAGTCTCTGTATTGACTCTTGACTG 60
Query 60 TTATAT-AAAACCATACAAATACCTTCAGATTCACTACTTCAAACCTCAAAGCAACCACT 118
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTATATAAAAACCATAC-AATACCTTCAGATTCACTACTTCAAACCTCAAACCAACCACT 119
Query 119 GAATCTCGACTTTGATCAATT--GAGAGAGAAATGAACACCGGCGGTGGCCAATACACGG 176
||| || |||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 120 GAAGCTTGACTTTGATCGATTGAGAGAGAGAAATGAACACCGGCGGCGGCCAATACACGG 179
Query 177 ATTTTCCGGCGGTGGAAACTCACGGAGGACAGTTCATAAGTTACGATATCTTCGGTAGTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTTTCCGGCGGTGGAAACTCACGGAGGACAGTTCATAAGTTACGATATCTTCGGTAGTT 239
Query 237 TATTCGAGATCACATCTAAGTATCGTCCTCCGATTATACCAATTGGTCGTGGAGCTTATG 296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 TATTCGAGATCACATCTAAGTATCGTCCTCCGATTATACCAATCGGTCGTGGAGCTTATG 299
Query 297 GAATCGTTTGCTCTGTGTTGGATACGGAGACGAACGAGCTAGTAGCGATGAAGAAGATAG 356
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 300 GAATCGTTTGCTCTGTGTTGGATACGGAGACCAACGAGCTTGTAGCTATGAAGAAGATAG 359
Query 357 CTAATGCTTTTGATAATCATATGGATGCTAAGCGTACGCTTCGTGAGATCAAGCTTCTTC 416
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 CGAATGCTTTCGATAATCATATGGATGCTAAGCGTACGCTTCGTGAGATTAAGCTTCTTC 419
Query 417 GTCATCTTGATCATGAAAACATTATAGCTATAAGAGATGTTGTTCCACCACCACTAAGAA 476
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GTCATCTAGATCATGAAAACATTATAGCTATAAGAGATGTTGTTCCACCACCACTACGAC 479
Query 477 GACAGTTCAGTGATGTTTATATCTCTACTGAATTAATGGATACTGATCTTCATCAAATCA 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GACAGTTCAGTGATGTTTATATTTCTACTGAATTAATGGATACTGATCTTCATCAAATCA 539
Query 537 TCAGATCTAACCAGAGTTTATCAGAAGAACACTGTCAGTACTTCTTGTACCAGCTACTTC 596
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGATCTAATCAAAGTTTATCAGAAGAACACTGTCAGTACTTCTTGTACCAGCTACTTC 599
Query 597 GAGGACTGAAGTATATCCACTCAGCTAACATTATTCATAGGGATTTAAAGCCGAGCAATC 656
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGGGCTTAAGTATATCCACTCAGCTAACATTATTCATAGGGATTTAAAGCCGAGCAATC 659
Query 657 TTCTGTTGAACGCGAATTGCGATTTAAAGATTTGTGATTTCGGTCTTGCTAGACCTACTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCTGTTGAACGCGAATTGCGATTTAAAGATTTGTGATTTCGGTCTTGCTAGACCTACTT 719
Query 717 CAGAGAATGATTTTATGACTGAGTATGTTGTTACGAGATGGTATAGAGCACCTGAGCTTC 776
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAGAGAATGACTTCATGACTGAGTATGTTGTTACGAGATGGTATAGAGCACCTGAGCTTC 779
Query 777 TGTTGAACTCTTCAGATTACACAGCTGCTATTGATGTTTGGTCTGTTGGTTGTATCTTTA 836
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TGTTGAACTCTTCTGATTATACAGCTGCTATAGATGTTTGGTCTGTTGGTTGTATCTTTA 839
Query 837 TGGAGCTTATGAATAGAAAGCCTTTGTTCCCTGGTAAAGACCATGTTCATCAAATGCGCT 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 TGGAGCTTATGAATAGAAAGCCTTTGTTCCCTGGTAAAGACCATGTTCATCAAATGCGAT 899
Query 897 TATTGACAGAGTTGCTTGGCACACCGACAGAATCTGATCTCGGTTTTACTCACAATGAGG 956
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||
Sbjct 900 TATTGACAGAGTTGCTTGGCACACCGACAGAAGCTGATCTCGGGTTTACACACAACGAGG 959
Query 957 ATGCGAAAAGATACATCCGGCAACTTCCCAACTTCCCACGTCAGCCCTTAGCTAAACTTT 1016
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 960 ATGCGAAAAGATACATCCGGCAACTTCCCAACTTCCCACGCCAGCCGTTAGCAAAACTTT 1019
Query 1017 TCTCTCATGTTAACCCAATGGCCATTGATCTTGTTGACAGAATGTTGACGTTTGACCCCA 1076
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1020 TCTCTCATGTTAACCCATTGGCCATTGATCTAGTTGACCGAATGTTGACGTTTGACCCCA 1079
Query 1077 ACAGAAGAATCACTGTTGAACAAGCTCTGAATCACCAGTACCTTGCTAAATTGCACGACC 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 ACAGAAGAATCACTGTTGAACAAGCTCTGAATCACCAGTACCTTGCTAAATTACACGACC 1139
Query 1137 CGAATGATGAGCCAATCTGTCAAAAGCCATTCTCTTTTGAGTTCGAACAACAGCCTCTGG 1196
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1140 CGAATGATGAGCCAATCTGTCAAAAGCCATTCTCTTTCGAGTTCGAACAACAGCCTCTGG 1199
Query 1197 ATGAGGAACAGATAAAAGAGATGATCTACCAAGAAGCCATAGCACTCAATCCAACATACG 1256
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ACGAGGAACAGATAAAAGAGATGATCTACCAAGAAGCCATAGCACTCAATCCAACATACG 1259
Query 1257 GTTAGAAGTGCAGCAGCCCCGTGAATGCCTGGTATTACCCAATAACCATCCGAATGGCTA 1316
||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1260 CTTAAAAGAGCAGCAGCCCCGTGATTGCCCGGTATTACCCAATAACCATCCGAATGGCTG 1319
Query 1317 CTTAGTATCTTTGCCTGTTCTTTTATTCATGTACTTCTTCCACATATGTAATCTTGTAAC 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTTAGTATCTTTGCCTGTTCTTTTATTCATGTACTTCTTCCACATATGTAATCTTGTAA- 1378
Query 1377 TTTTATTTGTTTGTTCATGTTATTTACTGCTAGTGATTAAGTGTAGCTCCAATGTAAAGT 1436
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1379 TTCTATTTGTTTGTTCATGTTATTTACTACTAGTGATTGAGTGTAGCTCCAATGTAAAGT 1438
Query 1437 ACTCCAGT-TATTAAAGAATATCTATAGACTTTTTT 1471
|||||| | ||| ||| ||||||||||||||||||
Sbjct 1439 ACTCCA-TATATGAAACCATATCTATAGACTTTTTT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5