BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45770.1 Length=1401 Score E Sequences producing significant alignments: (Bits) Value Ahg484959 jgi|Araly1|484959|fgenesh2_kg.5__951__AT3G45770.1 2093 0.0 > Ahg484959 jgi|Araly1|484959|fgenesh2_kg.5__951__AT3G45770.1 Length=1372 Score = 2093 bits (1133), Expect = 0.0 Identities = 1305/1386 (94%), Gaps = 20/1386 (1%) Strand=Plus/Plus Query 21 AAAAAACCAAAACGACGTCGTTTCTTATATCGTTGCCAGAGAGAGTTTGACGGCGGAGAG 80 ||||| ||||||||||||| |||||||||||| || |||||| || ||||||||||||| Sbjct 1 AAAAACCCAAAACGACGTCATTTCTTATATCGCTGTGAGAGAGTGTGTGACGGCGGAGAG 60 Query 81 ATATGGCGGCGTTGATGGAGTCAGTCGTCGGCCGAGCTCTAAAATTCTCATCGACGGCGA 140 ||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 61 ATATGGCGGCGCTGATGAAGTCAGTCGCCGGCCGAGCTTTAAAATTCTCATCGACGGCGA 120 Query 141 ATTTCAGGTCAATCCGACGCGGCGAAACACCAACACTCTGTATCAAATCATTCTCCACC- 199 |||||||||||| |||| || | |||||||| |||||||||||||||||||||||||| Sbjct 121 ATTTCAGGTCAAAACGACACGTCAAAACACCAGCACTCTGTATCAAATCATTCTCCACCG 180 Query 200 --ATTATGTCACCACCGTCAAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCG 257 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTATTATGTCACCACCGTCGAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCG 240 Query 258 TCACCAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAA 317 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCACAAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAA 300 Query 318 TGATCGCCGCTCCGATCAACCCCTCCGATATCAATCGAATTGAAGGTGTGTATCCGGTGA 377 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 301 TGATCGCCGCTCCGATCAATCCCTCCGATATCAATAGAATTGAAGGTGTGTATCCGGTGA 360 Query 378 GGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGTGAAGTTTATGCAGTTGGCT 437 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 GGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGAGAAGTTTATGCAGTTGGCT 420 Query 438 CCAATGTTAATGGTTTTTCTCCTGGTGATTGGGTCATTCCATCTCCACCTTCTTCAGGGA 497 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 CCAAGGTTAATGGTTTTTCTCCTGGTGATTGGGTTATTCCATCTCCACCTTCTTCAGGGA 480 Query 498 CTTGGCAGACTTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGAGTGTC 557 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 481 CTTGGCAGACGTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGCGTGTC 540 Query 558 CAATGGAGTATGCAGCGACGATTACTGTTAATCCATTGACGGCTTTGAGGATGCTTGAGG 617 ||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||| | Sbjct 541 CAATGGAGTATGCTGCGACGATTACTGTTAATCCTTTGACGGCTCTAAGGATGCTTGAAG 600 Query 618 ACTTTGTGAACTTGAATTCTGGGGATTCTGTTGTACAGAATGGTGCAACAAGTATTGTGG 677 |||||||| ||| |||||||| ||||| || |||||||||||||||||||||||||||| Sbjct 601 ACTTTGTGGTCTTAAATTCTGGAGATTCCGTGGTACAGAATGGTGCAACAAGTATTGTGG 660 Query 678 GTCAGTGTGTCATTCAGTTGGCAAGACTCCGTGGCATCAGTACCATCAACCTTATTCGTG 737 |||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||| Sbjct 661 GTCAGTGTGTCATTCAGTTGGCTAGACTCCGTGGCATTAGTACTATCAATCTTATTCGTG 720 Query 738 ACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTCT 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 721 ACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTGT 780 Query 798 TTTCAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAAC 857 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TTTTAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAAC 840 Query 858 CAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTCCTCAAATATCTCA 917 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 841 CAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTGCTCAAATATCTCA 900 Query 918 GGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAA 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAA 960 Query 978 CAACATCTTTCATCTTTAAGGATTTGGCCTTAAGAGGATTTTGGCTGCAGAGTTGGTTGA 1037 ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 961 CAACATCTTTCATCTTTAAGGATTTGGCCTTGAGAGGATTCTGGCTTCAGAGTTGGTTGA 1020 Query 1038 GTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAG 1097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 GTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAG 1080 Query 1098 ACGGGAAGCTAAAATACGAAACGGAATTGGTTCCCTTCGAAGAGTTCCCTGTTGCTCTCG 1157 |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1081 ACGGAAAGCTAAAATATGAAACGGAATTGGTTCCCTTCGACGAGTTCCCTGTTGCTCTCG 1140 Query 1158 ATAAAGCTCTCGGGAAGCTAGGAAGGCAACCTAAACAAGTCATCACATTCTGAAGCTTCC 1217 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1141 ATAAAGCTCTCGGGAAGCTAGGTAGGCAACCTAAACAAGTCATCACATTCTAAAGCTTCC 1200 Query 1218 TTTG-TGTGAGCCATTTAGTAACTGTTGCCACTATCTTTAGTGTTAGCTATTAATATGAC 1276 || | | |||||||||||||||||||| ||||| | || |||||||||||| Sbjct 1201 TTCGCT-TGAGCCATTTAGTAACTGTTACCACT-T----AG------CTATTAATATGAT 1248 Query 1277 AAGGCATGATGTACTTTATTATATAG-TATCTGCTTCTTCTTGTCCAATGTATCAG-Gaa 1334 || ||||||||||||||||||| | | ||||||||||||||||| ||||||||||| ||| Sbjct 1249 AATGCATGATGTACTTTATTAT-TCGGTATCTGCTTCTTCTTGTACAATGTATCAGAGAA 1307 Query 1335 aaaaaTGAGAATGTAGACTGAATAAAAACCAAAATAAATCATTATGCTCATGTTCAGATT 1394 || |||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| Sbjct 1308 AACAATGAGAATGTAGACTGAATAAAA-CCAAAATAAATTATTATGCTCAAGTTCAGATT 1366 Query 1395 GTAACT 1400 |||||| Sbjct 1367 GTAACT 1372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52374086875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5