BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45780.1
Length=3304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484960 jgi|Araly1|484960|fgenesh2_kg.5__952__AT3G45780.1 4857 0.0
> Ahg484960 jgi|Araly1|484960|fgenesh2_kg.5__952__AT3G45780.1
Length=3180
Score = 4857 bits (2630), Expect = 0.0
Identities = 2973/3137 (95%), Gaps = 29/3137 (1%)
Strand=Plus/Plus
Query 2 GAAAAATCGAAGGATAATCTGTTTCTTCC-AGCACAAGTTAACTTGCAAGAGAGAGCTCA 60
||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 GAAAAATCGTAGAATAATCTGTTTCTTCCTA-CACAAGTTAACTTGCAAGAGAGAGCTCA 59
Query 61 AAGATGGAACCAACAGAAAAACCATCGACCAAACCATCTTCTCGGACTCTACCTAGAGAC 120
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 AAGATGGAACCAACAGAGAAACCATCGACCAAACCGTCTTCTCGGACTCTACCTAGAGAC 119
Query 121 ACTCGTGGCTCTCTCGAAGTATTCAACCCGTCAACTCAGCTGACCCGACCCGATAACCCG 180
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 120 ACTCGTGGCTCTCTCGAAGTATTCAACCCGTCAACTCACCCGGCCCGACCCGATAACCCG 179
Query 181 GTGTTCCGTCCTGAACCACCAGCGTGGCAAAACTTGAGTGATCCACGTGGCACCAGTCCT 240
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGTACCGTCCTGAACCACCAACGTGGCAAAACTTGAGTGATCCACGTGGCACCAGTCCT 239
Query 241 CAACCCCGACCACAACAAGAACCAGCTCCATCCAACCCTGTTCGGTCTGATCAAGAAATC 300
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 240 CAACCCCGACCAGAACAAGAACCAGCTCCCTCCAATCCTGTTCGGTCTGATCAAGAAATC 299
Query 301 GCTGTCACGACCTCATGGATGGCTCTGAAAGACCCATCACCGGAGACAATCTCCAAGAAG 360
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 300 GCTGTCACAACCTCATGGATGGCCCTGAAAGACCCATCACCGGAGAAAATCTCCAAGAAG 359
Query 361 ACGATCACCGCCGAGAAACCACAGAAGTCGGCGGTGGCGGCTGAGCAGAGAGCGGCAGAG 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 360 ACGATCACCGCCGAGAAACCACAGAAGTCGGCGGTGGCTGCTGAGCAGAGAGCGGCGGAG 419
Query 421 TGGGGATTGGTTTTGAAGACCGATACAAAGACGGGAAAGCCACAAGGAGTAG-GCGTGAG 479
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 420 TGGGGATTGGTTTTGAAGACGGATACAAAGACGGGAAAGCCACAAGGAGT-GAGCGTGAG 478
Query 480 GAACTCTGGTGGAACTGAGAATGATCCTAACGGGAAAAAGACTACATCGCAGAGAAACTC 539
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAACTCTGGTGGGACTGAGCATGATCCTAACGGGAAAAAGACTACATCGCAGAGAAACTC 538
Query 540 GCAAAACTCTTGCCGGAGCTCCGGTGAGATGTCGGACGGAGATGTTC-CCGGCGGGAGGA 598
||| || ||||||||||||||||| |||||||| |||||||||| || ||| |||| ||
Sbjct 539 GCAGAATTCTTGCCGGAGCTCCGGCGAGATGTCCGACGGAGATG-TCGTCGGAGGGA-GA 596
Query 599 -GTGGGATTCCAAGAGTATCGGAAGATCTAAAAGATGCGTTGTCGACGTTTCAACAAACG 657
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 597 GGAGGGATTCCAAGAGTATCGGAAGATCTGAAAGATGCGTTGTCAACGTTTCAACAAACG 656
Query 658 TTTGTGGTCTCAGATGCTACAAAACCTGATTATCCGATTATGTATGCAAGTGCTGGTTTC 717
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 TTTGTGGTTTCAGATGCTACAAAACCTGATTACCCGATTATGTATGCAAGTGCTGGTTTC 716
Query 718 TTCAATATGACTGGTTACACTTCCAAAGAAGTCGTCGGCAGAAACTGCCGATTTTTACAA 777
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 TTCAATATGACCGGTTACACTTCCAAAGAGGTCGTCGGCAGAAACTGCCGATTTTTACAA 776
Query 778 GGATCAGGTACAGATGCAGATGAGTTAGCAAAGATAAGAGAGACATTAGCTGCTGGTAAC 837
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 777 GGATCAGGGACAGATGCTGATGAGTTAGCGAAGATCAGAGAGACATTAGCTGCTGGTAAC 836
Query 838 AATTATTGTGGGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTC 897
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AATTATTGTGGACGTTTATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTC 896
Query 898 ACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGAATGCAAGTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGAATGCAAGTG 956
Query 958 GAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAG-GCTTTGAGGCCCAATGGGCTTCC 1016
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 957 GAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAGAG-TTTGAGGCCCAATGGGCTTCC 1015
Query 1017 GGAATCTCTGATTCGATACGATGCCCGCCAAAAAGATATGGCGACAAACTCAGTGACAGA 1076
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct 1016 GGAATCTCTGATTCGATATGATGCCCGCCAAAAAGATATAGCTACGAACTCAGTGACAGA 1075
Query 1077 GCTAGTAGAGGCGGTGAAGAGACCTCGGGCACTAAGCGAATCGACGAATCTCCATCCCTT 1136
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1076 GCTAGTGGAGGCGGTGAAGAGACCTCGAGCACTAAGCGAATCGACGAATCTCCATCCCTT 1135
Query 1137 CATGACAAAATCGGAGAGCGATGAACTTCCGAAAAAACCAGCTCGGCGAATGTCCGAAAA 1196
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1136 CATGACAAAATCGGAGAGCGATGAACTACCGAAAAAACCTGCTCGGCGAATGTCCGAAAA 1195
Query 1197 TGTTGTTCCGTCAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAAT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGTTGTTCCGTCAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAAT 1255
Query 1257 CAACGAAATTCCCGAGAAAAAATCTAGAAAATCTTCCCTTTCCTTCATGGGGATCAAGAA 1316
|||||||||||||||||| ||||| || |||||||| |||||||| |||||||| |||||
Sbjct 1256 CAACGAAATTCCCGAGAAGAAATCGAGGAAATCTTCTCTTTCCTTTATGGGGATTAAGAA 1315
Query 1317 GAAGAGCGAATCTTTGGATGAATCTATAGACGATGGATTTATAGAGTATGGAGAAGAAGA 1376
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GAAGAGTGAATCTTTGGATGAATCTATAGACGATGGATTTATAGAGTATGGAGAAGAAGA 1375
Query 1377 CGATGAGATTAGTGATAGGGACGAGAGACCTGAGAGTGTGGATGATAAAGTGAGACAAAA 1436
|||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1376 CGATGAAATTAGTGACAGAGACGAGAGACCAGAGAGTGTGGATGATAAAGTGAGACAAAA 1435
Query 1437 GGAAATGAGAAAGGGTATTGATCTAGCTACTACACTCGAACGTATCGAGAAGAATTTCGT 1496
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1436 GGAAATGAGAAAGGGTATTGATCTCGCTACTACACTGGAACGTATCGAGAAGAATTTCGT 1495
Query 1497 CATCACTGATCCTAGGCTTCCCGATAATCCCATTATTTTTGCATCTGATAGTTTCTTGGA 1556
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CATCACTGATCCTCGGCTTCCCGATAATCCCATTATTTTTGCATCTGATAGTTTCTTGGA 1555
Query 1557 GCTCACGGAATATAGCCGTGAAGAAATTCTTGGAAGAAATTGCAGGTTTCTACAAGGTCC 1616
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1556 GCTCACGGAATATAGCCGTGAAGAAATCCTTGGCAGAAATTGCAGGTTTCTGCAAGGTCC 1615
Query 1617 AGAGACTGATCTAACCACAGTGAAGAAGATTCGAAATGCTATTGATAACCAAACCGAAGT 1676
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 AGAGACTGATCTGACCACGGTGAAGAAGATTCGAAATGCTATTGATAACCAAACCGAAGT 1675
Query 1677 GACAGTTCAGCTCATCAACTACACCAAGAGCGGAAAGAAGTTCTGGAACATTTTCCACTT 1736
||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1676 GACGGTTCAGCTCATCAACTACACTAAAAGCGGAAAGAAGTTTTGGAACATTTTCCACTT 1735
Query 1737 GCAACCTATGCGTGATCAGAAGGGAGAAGTACAATACTTTATTGGAGTTCAACTAGACGG 1796
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GCAACCTATGCGTGATCAAAAGGGAGAAGTACAATACTTTATTGGAGTTCAACTAGACGG 1795
Query 1797 GAGCAAGCACGTAGAACCAGTTCGCAATGTCATTGAAGAAACCGCAGTGAAAGAGGGAGA 1856
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1796 GAGCAAGCACGTAGAGCCAGTTCGCAATGTCATTGAAGAAACCAAAGTGAAAGAGGGGGA 1855
Query 1857 AGACCTGGTGaaaaaaaCAGCTGTGAATATCGATGAAGCGGTTCGAGAACTTCCTGATGC 1916
||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1856 AGAGCTGGTGAAGAAAACAGCTGTAAATATCGATGAAGCAGTTCGAGAACTTCCTGATGC 1915
Query 1917 CAACATGACACCAGAGGATTTATGGGCAAACCACTCAAAGGTTGTTCATTGTAAGCCTCA 1976
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CAACATGAGACCAGAGGATTTATGGGCAAACCACTCAAAGGTTGTTCATTGTAAGCCTCA 1975
Query 1977 CAGGAAAGATTCACCACCATGGATAGCTATCCAAAAGGTGTTGGAAAGTGGTGAACCGAT 2036
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1976 TAGGAAAGATTCATCACCATGGATAGCTATCCAAAAGGTATTGGAAAGTGGTGAACCGAT 2035
Query 2037 TGGTTTGAAGCATTTCAAACCGGTGAAACCTTTGGGTTCTGGTGACACAGGAAGTGTGCA 2096
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 2036 TGGTTTGAAGCATTTCAAACCGGTGAAGCCTTTGGGTTCCGGTGATACTGGAAGTGTGCA 2095
Query 2097 TCTAGTGGAACTCGTTGGAACAGATCAGTTGTTTGCAATGAAAGCAATGGACAAGGCTGT 2156
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TCTAGTGGAACTCGTTGGAACGGATCAGTTGTTTGCAATGAAAGCAATGGACAAGGCTGT 2155
Query 2157 TATGCTTAACCGAAACAAAGTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTGCT 2216
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 2156 CATGCTTAACCGAAACAAAGTGCATAGAGCTAGAGCTGAGAGAGAAATCCTCGATTTGCT 2215
Query 2217 TGACCATCCTTTTCTTCCTGCACTCTACGCTTCTTTTCAGACAAAAACACATATATGTCT 2276
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2216 TGACCATCCTTTTCTTCCCGCACTCTACGCTTCATTTCAGACAAAAACACATATATGTCT 2275
Query 2277 TATAACAGATTACTATCCAGGAGGAGAACTCTTCATGCTCCTAGATCGACAACCTAGGAA 2336
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 CATTACAGATTACTATCCAGGAGGAGAACTCTTCATGCTCCTAGATCGACAACCTAGGAA 2335
Query 2337 GGTTCTCAAAGAAGATGCTGTAAGATTCTATGCTGCTCAAGTTGTCGTTGCACTCGAGTA 2396
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2336 GGTTCTCAAGGAAGATGCCGTAAGATTCTATGCTGCTCAAGTTGTCGTTTCACTCGAGTA 2395
Query 2397 TCTTCACTGTCAAGGAATAATTTACCGAGACTTGAAACCGGAAAACGTTTTAATCCAAGG 2456
||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2396 TCTTCACTG----G-A-TAATTTACCGAGACTTGAAACCGGAAAACGTGTTAATCCAAGG 2449
Query 2457 CAATGGCGATATCTCTTTGTCGGATTTTGATCT-GTCTTGCTTGACATCTTGCAAACCTC 2515
|||||||||||| || || |||||||| || || ||||||||||||||||||||||||||
Sbjct 2450 CAATGGCGATATTTCCTTATCGGATTTCGA-CTTGTCTTGCTTGACATCTTGCAAACCTC 2508
Query 2516 AGCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAA 2575
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2509 AGCTGTTGATTCCGAGTATAGATGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAA 2568
Query 2576 CTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCATTTGTTGGCACTGAAGAGT 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2569 CTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCATTTGTTGGCACTGAAGAGT 2628
Query 2636 ACATTGCTCCGGAAATTATATCCGGAGCAGGACATACGAGTGCAGTAGACTGGTGGGCTC 2695
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2629 ATATTGCTCCGGAAATTATATCCGGGGCAGGACATACGAGTGCAGTGGACTGGTGGGCTC 2688
Query 2696 TTGGTATACTTATGTATGAAATGTTATACGGATACACTCCTTTTAGAGGAAAAACAAGAC 2755
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2689 TTGGTATCCTTATGTATGAAATGTTATACGGATACACTCCGTTTAGAGGAAAAACCCGAC 2748
Query 2756 AGAAGACTTTCACCAATGTTCTTCAAAAAGATCTCAAGTTTCCAGCTAGCATTCCTGCAA 2815
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2749 AGAAGACTTTCACCAATGTTCTTCAGAAAGATCTCAAGTTTCCAGCTAGCATTCCTGCAA 2808
Query 2816 GTCTTCAAGTGAAACAGCTGATTTTTAGGCTGTTACAACGAGATCCGAAGAAAAGACTAG 2875
|||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 2809 GTCTTCAAGTGAAACAACTGATCTTTAGGCTCTTACAACGAGATCCGAAGAAAAGATTAG 2868
Query 2876 GTTGTTTTGAAGGAGCAAATGAAGTCAAGCAACATTCTTTCTTCAAAGGCATAAATTGGG 2935
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2869 GCTGTTTTGAAGGAGCAAACGAAGTCAAGAAACATTCTTTCTTCAAAGGCATAAATTGGG 2928
Query 2936 CTCTGATTCGATGCACGAACCCTCCAGAGCTCGAGACTCCGATATTTTCTGGTGAAGCTG 2995
|||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 2929 CTCTTATTCGATGCACGAATGCTCCGGAGCTAGAGACTCCGATATTTTCTGGTGAAGCTG 2988
Query 2996 AAAACGGAGAGAAAGTTGTTGATCCTGAGCTAGAAGATCTGCAAACAAATGTTTTTTGAG 3055
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2989 AAAACGGAGAGAAAGTTGTTGATCCTGACCTGGAAGATCTGCAAACAAATGTTTTTTGAA 3048
Query 3056 ATTTGGACTAAACGTTTATCGTTTTCT-TTT-C--A----A-GAATTGTTTGAAACTCTT 3106
||||| | || | |||| | ||||||| ||| | | | ||||||||||||||||||
Sbjct 3049 ATTTGAATTATATGTTTCTTGTTTTCTCTTTACCGATTTCAAGAATTGTTTGAAACTCTT 3108
Query 3107 TG-TTCTCCAAAAATCT 3122
|| || || ||||||||
Sbjct 3109 TGCTTTTC-AAAAATCT 3124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124714666721
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5