BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45970.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484976 jgi|Araly1|484976|fgenesh2_kg.5__968__AT3G45970.1 1286 0.0
Ahg490602 jgi|Araly1|490602|fgenesh2_kg.7__35__AT4G38400.1 782 0.0
> Ahg484976 jgi|Araly1|484976|fgenesh2_kg.5__968__AT3G45970.1
Length=929
Score = 1286 bits (696), Expect = 0.0
Identities = 845/916 (92%), Gaps = 14/916 (2%)
Strand=Plus/Plus
Query 2 CATGTAAATTCACATATCTCTCTCTCTTATTTGATCATAAAGATATTATTGCTTCTTCAA 61
||| ||||||||||||||||||| | |||| ||||| |||||||||| ||| || |
Sbjct 1 CATCTAAATTCACATATCTCTCT-AC---TTTGCTCATATAGATATTATTTTTTCCTCTA 56
Query 62 GTAAACA-AAAAATGGGAAGCTTTCTCTTCCTCATCGTAGTCATCTTCCTCTTCTCTTCA 120
| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 57 G-AAAAACAAAAATGGGAAGCTTTCTCTACCTCATCGTAGTCATCTTCCTCTTCTCATCA 115
Query 121 TCCGTTAACGCTTGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCTGTTAACGCTTGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCT 175
Query 181 TCTGCTCTCTCTTCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCTGCTCTCTCTTCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGA 235
Query 241 CATATCGCTGCAGCTATCCCTTCTATCTACAAAGACGGTGCTGGCTGTGGAGCTTGCTTT 300
|| || || |||||||| ||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 236 CACATAGCCGCAGCTATACCTTCGATCTACAAAGACGGCGCTGGTTGTGGAGCTTGCTTT 295
Query 301 CAAGTCAGATGCAAGAACCCTAAGCTGTGTAGCA-CTAAAGGAACCATTGTGATGATCAC 359
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 296 CAAGTCAGATGCAAGAACCCTAAGCTGTGTAGCAGC-AAAGGAACCATTGTGATGATCAC 354
Query 360 AGACTTAAACAAGAGTAACCAAACCGATCTTGTCCTTAGTAGCAGAGCTTTTAGAGCTAT 419
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 355 AGACTTGAACAAGAGCAACCAAACCGATCTTGTCCTTAGTAGCAGAGCATTTAGAGCTAT 414
Query 420 GGCTAAACCTATTGTTGGTGCTGACAAAGACCTTCTCAAACAAGGCATTGTCGACATCGA 479
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 415 GGCTAAACCTGTTGTTGGTGCTGACAAAGATCTTCTCAAACAAGGCATTGTCGATATCGA 474
Query 480 ATACCAAAGAGTTCCTTGCGATTACGGCAACAAGAACATGAACGTGAGAGTAGAAGAAGC 539
||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||
Sbjct 475 ATACCAAAGAGTTCCTTGCGATTACGGGAACAAGAACCTAAACGTGAGAGTCGAAGAAGC 534
Query 540 AAGCAAGAAA-CCAAACTACTTAGAGATAAAGCTTTTATACCAAGGAGGTCAAACAGAAG 598
|||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 535 AAGCAA-AAAGCCATACTACTTAGAGATAAAGCTTTTATACCAAGGAGGACAAACCGAAG 593
Query 599 TAGTATCCATCGACATTGCTCAAGTCGGTTCATCGCCAAATTGGGGTTACATGACAAGAA 658
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 594 TAGTATCAATCGACATTGCTCAGGTCGGTTCATCGCCAAATTGGGGTTACATGACCAGAA 653
Query 659 GCCACGGAGCTGTTTGGGTAACTGACAAAGTACCCACCGGAGCTATCCAGTTCAGGTTCG 718
||||||||||||| |||| |||||||||||||| ||||| ||| | |||||||| |||
Sbjct 654 GCCACGGAGCTGTATGGGCGACTGACAAAGTACCAACCGGCGCTCTTCAGTTCAGATTCA 713
Query 719 TAGTAACCGGTGGATACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATT 778
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TAGTAACCGGCGGCTACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATT 773
Query 779 GGGAAGCTGGGAAAATTTACGACGCCGGTGTTCAAATCACTGACATTGCTCAAGAAGGTT 838
||||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 774 GGGAAGCTGGGAAGACTTACGACGCCGGCGTTCAAATCACAGACATTGCTCAAGAAGGTT 833
Query 839 GTGATCCTTGCGATGCTCACATCTGGAACTAAGTTATTTAGTG--GCACACAAACAAACA 896
||||||| |||||||||||||||||||||||| ||||||| | |||||||| ||||||
Sbjct 834 GTGATCCATGCGATGCTCACATCTGGAACTAACTTATTTATTTAAGCACACAA-CAAACA 892
Query 897 TCTTTCATAGGTTTAT 912
| || ||||||||||
Sbjct 893 CCCTT-ATAGGTTTAT 907
> Ahg490602 jgi|Araly1|490602|fgenesh2_kg.7__35__AT4G38400.1
Length=991
Score = 782 bits (423), Expect = 0.0
Identities = 678/801 (85%), Gaps = 18/801 (2%)
Strand=Plus/Plus
Query 76 GGAA-GCTTTCTCTTCCTCATCGT-AGTCATCTTCCTCTTCTCTTCATCCGTTA-ACGCT 132
|||| |||||||||||||| || | |||| ||||||||||||| ||||| | | |||
Sbjct 3 GGAAGGCTTTCTCTTCCTCCTC-TCAGTCGTCTTCCTCTTCTCCTCATCTG-CAGCCGCC 60
Query 133 TGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCCTCTGCTCTCTCT 192
|| || |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 TGCGACCGATGTCTTCACCGTTCTAAGGCTGCTTATTTCTCCTCTGCCTCTGCTCTCTCC 120
Query 193 TCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGACATATCGCTGCA 252
|| ||||||||||| |||||||||||||||||| |||||||||||||||| || || ||
Sbjct 121 TCCGGAGCTTGTGCCTATGGCTCTATGGCTACGGGTTTCTTCGCCGGACACATTGCCGCG 180
Query 253 GCTATCCCTTCTATCTACAAAGACGG-TGCTGGCTGTGGAGCTTGCTTTCAAGTCAGATG 311
||| | ||||| |||||||||||||| | | ||||| ||||||||||| || ||||||||
Sbjct 181 GCTCTGCCTTCCATCTACAAAGACGGCTCC-GGCTGCGGAGCTTGCTTCCAGGTCAGATG 239
Query 312 CAAGAACCCTAAGCTGTGTAGCA-CTAAAGGAACCATTGTGATGATCACAGACTTAAACA 370
| |||||| | || || |||| | |||||||| | |||||| |||||||| | ||||
Sbjct 240 TACGAACCCGACCCTTTGCAGCAGC-AAAGGAACAACGGTGATGCTCACAGACCTGAACA 298
Query 371 AGAGTAACCAAACCGATCTTGTCCTTAGTAGCAGAGCTTTTAGAGCTATGGCTAAACCTA 430
|||| ||||||||||||||| ||||||| |||||||| ||||| || |||||||| |||
Sbjct 299 AGAGCAACCAAACCGATCTTATCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTG 358
Query 431 TTGTTGG-TGCTGACAAAGACCTTCTCAAACAAGGCATTGTCGACATCGAATACCAA-AG 488
||||||| | | |||| ||| ||||||||||||||| |||||||||| |||||| | ||
Sbjct 359 TTGTTGGCTCC-GACAGAGATCTTCTCAAACAAGGCCTTGTCGACATTGAATAC-AGGAG 416
Query 489 AGTTCCTTGCGATTACGGCAACAAGAACATGAACGTGAGAGTAGAAGAAGCAAGCAAGAA 548
|||||||||||||||||| |||||||| |||||||||||||| |||||| |||||| ||
Sbjct 417 AGTTCCTTGCGATTACGGGAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAT-AA 475
Query 549 A-CCAAACTACTTAGAGATAAAGCTTTTATACCAAGGAGGTCAAACAGAAGTAGTATCCA 607
| ||||||||||| | ||||||||| || ||||||||||| ||||| ||||| ||| |||
Sbjct 476 ATCCAAACTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACCGAAGTGGTAGCCA 535
Query 608 TCGACATTGCTCAAGTCGGTTCATCGCCAAATTGGGGTTACATGACAAGAAGCCACGGAG 667
| ||||||||||| || ||||| || | | |||| |||||||||| |||||||||||||
Sbjct 536 TTGACATTGCTCACGTTGGTTCGTCAC-A--TTGGAGTTACATGACCAGAAGCCACGGAG 592
Query 668 CTGTTTGGGTAACTGACAAAGTACCCACCGGAGCTATCCAGTTCAGGTTCGTAGTAACCG 727
| || ||||| |||||||||||||| ||||||||| | |||||||||||||| || ||||
Sbjct 593 CCGTGTGGGTTACTGACAAAGTACCAACCGGAGCTCTGCAGTTCAGGTTCGTGGTGACCG 652
Query 728 GTGGATACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATTGGGAAGCTG 787
|| |||||||| |||||| | ||||| ||||| || ||||| | || ||||||||||
Sbjct 653 CAGGCTACGACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCCGCTAACTGGGAAGCTG 712
Query 788 GGAAAATTTACGACGCCGGTGTTCAAATCACTGACATTGCTCAAGAAGGTTGTGATCCTT 847
|||| | || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 713 GGAAGACCTATGACGCCGGCGTTCAGATCACCGACATTGCTCAGGAAGGTTGTGATCCAT 772
Query 848 GCGATGCTCACATCTGGAACT 868
|||| | ||||||||||||||
Sbjct 773 GCGACGATCACATCTGGAACT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5