BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46060.1 Length=1132 Score E Sequences producing significant alignments: (Bits) Value Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1 1657 0.0 Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1 815 0.0 > Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1 Length=1102 Score = 1657 bits (897), Expect = 0.0 Identities = 1044/1107 (94%), Gaps = 41/1107 (4%) Strand=Plus/Plus Query 1 CTCTCTTTTTCTGCGCACTCCTTCGTTTCCAACTAACGTGCGCAGTGTATCCTATCGTGC 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 CTCTCTTTTTCTGCGCACTCCTTCGTTTCCAACTAACGTGCGCAGTGAATCCTATCGTGC 60 Query 61 ACGCGAAGCAGACGAAGAAGAAGTAAAATAGAAGAAGCCGGGAAACAAAAGCTAAATCGG 120 |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 ACGCGAAGCAGACG-A-AAGAAGTAAAATAGAAGAAGCCGGGAAAAAAAAGCTAAATCGG 118 Query 121 GAACTGGCGCATTTTAGTCGTCCGCCATAA------C-CTTCGCTCTCTGATTCTTCCGA 173 | ||||||||||||||| |||||||||||| | |||||||||||||||||||||| Sbjct 119 G-ACTGGCGCATTTTAGCCGTCCGCCATAACCTTCGCTCTTCGCTCTCTGATTCTTCCGA 177 Query 174 TTACATCGGTTTTCTTCTCTC-TCCGATTCAATGGCTGCTCCACCTGCTAGAGCCAGAGC 232 ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| Sbjct 178 TTACATCGGTTTTCTTCTC-CGTCCGATTCAATGGCTGCTCCTCCTGCTAGAGCCAGAGC 236 Query 233 TGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTG 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTG 296 Query 293 TCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGCAT 352 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 297 TCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGTAT 356 Query 353 TGACTTTAAGATAAGAACGATTGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGA 412 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 357 TGACTTTAAGATAAGAACGATTGAGCTTGATGGTAAACGTATCAAGCTTCAGATTTGGGA 416 Query 413 TACCGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGG 472 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TACTGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGG 476 Query 473 CATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGAT 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 CATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGAT 536 Query 533 TCGTAATATCGAACAGCATGCTTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGC 592 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 537 TCGTAACATCGAACAGCATGCTTCAGATAATGTTAACAAGATCTTGGTAGGGAACAAGGC 596 Query 593 TGACATGGATGAAAGCAAGAGGGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGA 652 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 597 TGACATGGATGAAAGCAAGAGGGCGGTACCTACAGCAAAGGGTCAAGCTCTTGCTGATGA 656 Query 653 GTACGGAATTAAGTTCTTCGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTT 712 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GTACGGAATTAAGTTCTTTGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTT 716 Query 713 CTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCC 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 CTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCC 776 Query 773 TGCAACGATCAAGATAAGCCAAACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAA 832 |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 777 TGCAACTATCAAGATAAGCCAAACGGACCAGGCAGCTGGAGCCGGGCAGGCCACACAGAA 836 Query 833 ATCTGCATGCTGTGGAACTTaaaaaagttttaaaagtgaagtttaagtcgaaaaaagttt 892 |||||||||||||||||||||||| ||| || || | || ||||| |||| Sbjct 837 ATCTGCATGCTGTGGAACTTAAAA---TTT-AA--GTC--G---AA----AAAAA-GTTT 880 Query 893 gggggtgaagtgaaaaa-CTAAGATATCGTTGGGTGCTTATGTAATTTTTTGTTTTATGC 951 |||| |||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| Sbjct 881 GGGG-TGAAGTGAAAAAACTAAGAT--CGTTGGGTGCTTTTGTAATTTTT-GTTTTATGC 936 Query 952 CAACAATTCTGATTCGTTCTTCTAAATTGTCCTTCCTATTTGTACGAAGGTTTAATCGAA 1011 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 937 CAACATTTCTGATTCGTTCT---AAATTGTCCTTCCTATTTGTACGAAGGTTTAATCGAA 993 Query 1012 ACTTGTATTTTT---CTTT-TCTATTACTGATTTTTTATGACGGTGACTGAATTGTTTAT 1067 || ||||||||| |||| ||| || ||||||||| |||||||||||||||||||| || Sbjct 994 ACATGTATTTTTTTTCTTTCTCTGTTGCTGATTTTTAATGACGGTGACTGAATTGTT-AT 1052 Query 1068 GTTGGTCATCACTTCTCTCTATATATC 1094 ||||||||||||||||||||||||||| Sbjct 1053 GTTGGTCATCACTTCTCTCTATATATC 1079 > Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1 Length=924 Score = 815 bits (441), Expect = 0.0 Identities = 588/661 (89%), Gaps = 2/661 (0%) Strand=Plus/Plus Query 195 TCCGATTCAATGGCTGCTCCACCTGCTAGAGCCAGAGCTGATTACGATTATCTCATTAAG 254 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 62 TCCGATTCAATGGCTGCTCCACCTGCTAGGGCTAGAGCTGATTACGATTATCTCATTAAG 121 Query 255 CTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTGTCTT-CTTCTACGTTTCTCTGA 313 |||||| | || || ||||||||||| |||||||||||| || ||| || | |||||||| Sbjct 122 CTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGT-TTGCTTTTAAGGTTCTCTGA 180 Query 314 TGGATCTTTCACCACTAGCTTCATTACCACCATTGGCATTGACTTTAAGATAAGAACGAT 373 ||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || Sbjct 181 TGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATTTTAAGATAAGAACTAT 240 Query 374 TGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGATACCGCTGGTCAAGAGCGGTT 433 ||||||||| || |||||||||||||| ||||||||||| || ||||||||||| || || Sbjct 241 TGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTGCTGGTCAAGAACGTTT 300 Query 434 TCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGGCATTTTGCTGGTGTATGATGT 493 ||| || |||||||||||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 301 TCGAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATTTTACTGGTGTATGATGT 360 Query 494 CACAGACGAGTCATCCTTCAACAACATTAGGAACTGGATTCGTAATATCGAACAGCATGC 553 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || Sbjct 361 CACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTCGTAATATCGAACAGCACGC 420 Query 554 TTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGCTGACATGGATGAAAGCAAGAG 613 ||| |||||||| ||||| ||||||||||||||||| ||||||||||| || |||||||| Sbjct 421 TTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGACATGGACGAGAGCAAGAG 480 Query 614 GGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGAGTACGGAATTAAGTTCTTCGA 673 ||| || || | | |||||||||| |||||||||||||| || ||||| ||||||||||| Sbjct 481 GGCTGTGCCAAAATCAAAGGGTCAAGCTCTTGCTGATGAATATGGAATCAAGTTCTTCGA 540 Query 674 AACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTTCTTCTCAATAGGGAGGGACAT 733 |||||||||||| ||||| || || |||||||||||||||||||| |||| | |||||| Sbjct 541 AACAAGTGCCAAAACAAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAGCAAAGGACAT 600 Query 734 TAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCCTGCAACGATCAAGATAAGCCA 793 |||||||| || | || || ||||| || ||||||||||||||||||||||| ||||| Sbjct 601 AAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCAAGATCAGCCA 660 Query 794 AACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAAATCTGCATGCTGTGGAACTTa 853 ||| ||||| || |||||||| || |||||||||||||| |||||||||||||||| ||| Sbjct 661 AACAGACCAGGCGGCTGGAGCCGGTCAGGCCACACAGAAGTCTGCATGCTGTGGAAGTTA 720 Query 854 a 854 | Sbjct 721 A 721 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42202069119 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5