BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46230.1
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485004 jgi|Araly1|485004|fgenesh2_kg.5__996__AT3G46230.1 911 0.0
Ahg937331 jgi|Araly1|937331|scaffold_501522.1 601 3e-171
Ahg474482 jgi|Araly1|474482|fgenesh2_kg.1__4436__AT1G53540.1 542 2e-153
> Ahg485004 jgi|Araly1|485004|fgenesh2_kg.5__996__AT3G46230.1
Length=621
Score = 911 bits (493), Expect = 0.0
Identities = 580/622 (93%), Gaps = 6/622 (1%)
Strand=Plus/Plus
Query 104 AAACGATGTCTCTAGTTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 163
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACGATGTCTCTAATTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 60
Query 164 TTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACGCCCGGGTTGACAAACGCAC 223
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 61 TTTCACTAGACGTATGGGATCCATTCGAAGGATTCATGACGCCTGGGTTGACAAACGCAC 120
Query 224 CTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTGAAG 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTGAGG 180
Query 284 CGCATGTGTTCAAGGCGGACGTGCCTGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGGTTG 343
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CGCACGTGTTCAAGGCGGACTTGCCGGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGGTTG 240
Query 344 AAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGAGTG 403
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGATGGGAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGAGTG 300
Query 404 ACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAGGTTTCGGTTGCCA 462
||| | ||||||||||||||| |||| |||||||||||||| ||||||||| | |||||
Sbjct 301 ACA-AGTGGCACCGTGTGGAGAGGTCGAGTGGGAAGTTCATTAGGAGGTTTAGATTGCCG 359
Query 463 GAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGTGTTGTCGGTTACG 522
|||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||
Sbjct 360 GAGAATGCGAAGGTGGAGGAAGTGAAGGCGAGTATGGAGAACGGTGTGTTGTCCGTTACG 419
Query 523 GTGCCGAAAGTTCAGGAGAGTAAGCCGGAGGTCAAGTCCGTTGATATCTCTGGTTAAGAG 582
||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 420 GTGCCGAAAGTGCCGGAGAGTAAGCCCGAGGTCAAGTCCATTGATATCTCTGGTTAAGAG 479
Query 583 GAACTCTGAAGTTGGAAAGCTTAAGACAGTAATATGTGATAGTGTGAAATAAATGGTGCG 642
||||| ||||||||||||||| |||||| ||| ||||||||||| |||||||| |||||
Sbjct 480 GAACTTTGAAGTTGGAAAGCTAAAGACAACAATGTGTGATAGTGTAAAATAAATAGTGCG 539
Query 643 ACTTTCCTTTCTTCTT-TTTCT--TGTAATCACCAATCTCGTTGTATCAATATAAGTAA- 698
| |||||||||| ||| ||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 540 AATTTCCTTTCTGCTTCTTTCTCCTGTAATCACCGATCTCGTTGTATCGATATAAGTAAA 599
Query 699 TCGTAATAAAAGAGTGTTTTGA 720
|| |||||||||||||||||||
Sbjct 600 TCTTAATAAAAGAGTGTTTTGA 621
> Ahg937331 jgi|Araly1|937331|scaffold_501522.1
Length=514
Score = 601 bits (325), Expect = 3e-171
Identities = 440/494 (89%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 99 AAGCGAAACGATGTCTCTAG-TTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCG 157
||| ||| | |||||||| | |||||||| |||||||||| ||||| || ||||||||||
Sbjct 11 AAGTGAAGCAATGTCTCT-GATTCCGAGCATTTTTGGAGGTCGAAGGACCAACGTGTTCG 69
Query 158 ACCCATTTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACG-C--CCGG-GTTG 213
| ||||| ||||| |||||||||||||| || || |||||||||||| | | || ||||
Sbjct 70 ATCCATTGTCACTCGACGTATGGGATCCTTTTGAGGGATTCTTGACGTCATCAGGTGTTG 129
Query 214 ACAAACGCACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAG 273
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 130 -CAAACGCACCGGCTAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAG 188
Query 274 ACACCTGAAGCGCATGTGTTCAAGGCGGACGTGCCTGGGCTT-AAGAAGGAAGAGGTGAA 332
|||||||| ||||| ||||||||||||||| |||| ||| || |||||||||||||||||
Sbjct 189 ACACCTGAGGCGCACGTGTTCAAGGCGGACTTGCC-GGGGTTGAAGAAGGAAGAGGTGAA 247
Query 333 GGTGGAGGTTGAAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGA 392
|||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| |||
Sbjct 248 GGTGGAGGTTGAAGATGGCAATATACTTCAGATAAGCGGAGAGAGGAGTAGTGAGAGTGA 307
Query 393 AGAGAAGAGTGACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAGGT 451
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 308 AGAGAAGAGTGACA-AGTGGCACCGTGTGGAGAGGTCAAGTGGGAAGTTCATGAGGAGGT 366
Query 452 TTCGGTTGCCAGAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGTGT 511
|| ||||||| |||||||| ||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 367 TTAGGTTGCCGGAGAATGCGAAGATGGAAGAAGTGAAGGCGAGTATGGAGAATGGTGTGT 426
Query 512 TGTCGGTTACGGTGCCGAAAGTTCAGGAGA-GTAAGCCGGAGGTCAAGTCCGTTGATATC 570
|||||||||||||||||||||| | ||||| | ||||| |||||||||||| | ||||||
Sbjct 427 TGTCGGTTACGGTGCCGAAAGTGCCGGAGAAG-AAGCCTGAGGTCAAGTCCATAGATATC 485
Query 571 TCTGGTTAAGAGGA 584
|| |||||| ||||
Sbjct 486 TCCGGTTAACAGGA 499
> Ahg474482 jgi|Araly1|474482|fgenesh2_kg.1__4436__AT1G53540.1
Length=613
Score = 542 bits (293), Expect = 2e-153
Identities = 430/496 (87%), Gaps = 10/496 (2%)
Strand=Plus/Plus
Query 94 AGAGTAAGCGAAACGATGTCTCTAGTTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTG 153
|||| ||| ||||||||||||||| |||| ||| | || ||||| ||||||| |||||
Sbjct 30 AGAGGAAGTGAAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACGAACGTT 89
Query 154 TTCGACCCATTTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACGCC--C-GGG 210
||||| ||||| || ||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 90 TTCGATCCATTCTCTCTAGACGTATGGGATCCATTCGAAGGATTCTTGACGCCGTCAGGA 149
Query 211 TTGACAAACGCACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGG 270
||| |||||||||| || ||||| |||||||||||||||||||||||||| || |||| |
Sbjct 150 TTGGCAAACGCACCGGCTAAGGATGTGGCAGCGTTCACAAACGCTAAAGTTGATTGGAAG 209
Query 271 GAGACACCTGAAGCGCATGTGTTCAAGGCGGACGTGCCTGGGCTTAAGAAGGAAGAGGTG 330
||||||||||| ||||| ||||||||||||||| | || ||||| ||||| |||||||||
Sbjct 210 GAGACACCTGAGGCGCACGTGTTCAAGGCGGACTTACCGGGGCTAAAGAAAGAAGAGGTG 269
Query 331 AAGGTGGAGGTTGAAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAAT 390
|||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||
Sbjct 270 AAGGTGGAGGTTGAAGATGGCAACATCCTTCAGATAAGCGGAGAGAGGAGCAATGAGAAT 329
Query 391 GAAGAGAAGAGTGACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAG 449
|||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 330 GAAGAGAAGAATGACA-AGTGGCACCGTGTGGAGCGGTCTAGTGGGAAGTTCATGAGGAG 388
Query 450 GTTTCGGTTGCCAGAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGT 509
|||| | | || |||||||| ||| |||| ||| | ||||| |||||||||||||| ||
Sbjct 389 GTTTAAGCTACCGGAGAATGCTAAGATGGAAGAAATCAAGGCCAGTATGGAGAATGGTGT 448
Query 510 GTTGTCGGTTACGGTGCCGAAAGTTC-AGGAGA-GTAAGCCGGAGGTCAAGTCCGTTGAT 567
|||||| ||||| ||||| ||||| | || ||| | ||||| ||||| |||||| |||||
Sbjct 449 GTTGTCTGTTACCGTGCCTAAAGTGCCAG-AGAAG-AAGCCTGAGGTTAAGTCCATTGAT 506
Query 568 ATCTCTGGTTAAGAGG 583
||||| |||||| |||
Sbjct 507 ATCTCCGGTTAA-AGG 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26647918983
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5