BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46430.1 Length=517 Score E Sequences producing significant alignments: (Bits) Value Ahg485014 jgi|Araly1|485014|fgenesh2_kg.5__1006__AT3G46430.1 320 6e-87 Ahg496097 jgi|Araly1|496097|fgenesh2_kg.8__1913__AT5G59613.1 220 6e-57 > Ahg485014 jgi|Araly1|485014|fgenesh2_kg.5__1006__AT3G46430.1 Length=377 Score = 320 bits (173), Expect = 6e-87 Identities = 266/306 (87%), Gaps = 26/306 (8%) Strand=Plus/Plus Query 81 agagagagagaAAATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAA 140 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22 AGAGAGAGAG-AAATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAA 80 Query 141 ACGTTGCTGGCCATTCCTCACCGGTTTCGCCGTCACCGGCGTTCTCATCACCAAGCTAAC 200 |||||| |||||||||||||| || |||||| ||||||||||||||||||||||| |||| Sbjct 81 ACGTTGTTGGCCATTCCTCACTGGATTCGCCTTCACCGGCGTTCTCATCACCAAGTTAAC 140 Query 201 CGCCGGACTCACTGAGGAAGATGCTAAGAACTCCAAGTTCGTCCAGCAACACAGAAGGTG 260 |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 141 CGCCGGACTCACTGAGGAAGATGCGAAGAACTCCAAGTTCGTTCAACAACACAGAAGGTG 200 Query 261 ATTCACTGAAGCAAAATGTAGAAGCTGACAAGGCATATAGATTTGGGACTATAGTGAATG 320 || || ||| |||||||||||| |||||||| | | || | | | Sbjct 201 ATGCA---AAG-----TGTAGAAGCTGAGAAGGCATA--G-T--GG-A-T---G------ 236 Query 321 CTTCAGCTTTGAAACATGTTCAATAACAAAGAAGATCATTCTATATACTCTTTTA-TTTT 379 |||||| ||||||||||| |||||||||||||||| |||||||||||||||||| |||| Sbjct 237 CTTCAGATTTGAAACATGGTCAATAACAAAGAAGAGCATTCTATATACTCTTTTTCTTTT 296 Query 380 CTCTGA 385 |||||| Sbjct 297 CTCTGA 302 > Ahg496097 jgi|Araly1|496097|fgenesh2_kg.8__1913__AT5G59613.1 Length=728 Score = 220 bits (119), Expect = 6e-57 Identities = 147/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGCTGGCCA 153 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60 Query 154 TTCCTCACCGGTTTCGCCGTCACCGGCGTTCTCATCACCAAGCTAACCGCCGGACTCACT 213 || ||||| || ||||||||||||||||| |||||||||||||| || || |||||||| Sbjct 61 TTTCTCACTGGATTCGCCGTCACCGGCGTCCTCATCACCAAGCTCACGGCTGGACTCACC 120 Query 214 GAGGAAGATGCTAAGAACTCCAAGTTCGTCCAGCAACACAG 254 |||||||| || |||||||||||||| ||||| |||||||| Sbjct 121 GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAG 161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18810705377 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5