BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46430.1

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485014 jgi|Araly1|485014|fgenesh2_kg.5__1006__AT3G46430.1         320    6e-87
  Ahg496097 jgi|Araly1|496097|fgenesh2_kg.8__1913__AT5G59613.1         220    6e-57


> Ahg485014 jgi|Araly1|485014|fgenesh2_kg.5__1006__AT3G46430.1
Length=377

 Score =  320 bits (173),  Expect = 6e-87
 Identities = 266/306 (87%), Gaps = 26/306 (8%)
 Strand=Plus/Plus

Query  81   agagagagagaAAATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAA  140
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   AGAGAGAGAG-AAATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAA  80

Query  141  ACGTTGCTGGCCATTCCTCACCGGTTTCGCCGTCACCGGCGTTCTCATCACCAAGCTAAC  200
            |||||| |||||||||||||| || |||||| ||||||||||||||||||||||| ||||
Sbjct  81   ACGTTGTTGGCCATTCCTCACTGGATTCGCCTTCACCGGCGTTCTCATCACCAAGTTAAC  140

Query  201  CGCCGGACTCACTGAGGAAGATGCTAAGAACTCCAAGTTCGTCCAGCAACACAGAAGGTG  260
            |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct  141  CGCCGGACTCACTGAGGAAGATGCGAAGAACTCCAAGTTCGTTCAACAACACAGAAGGTG  200

Query  261  ATTCACTGAAGCAAAATGTAGAAGCTGACAAGGCATATAGATTTGGGACTATAGTGAATG  320
            || ||   |||     |||||||||||| ||||||||  | |  || | |   |      
Sbjct  201  ATGCA---AAG-----TGTAGAAGCTGAGAAGGCATA--G-T--GG-A-T---G------  236

Query  321  CTTCAGCTTTGAAACATGTTCAATAACAAAGAAGATCATTCTATATACTCTTTTA-TTTT  379
            |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||  ||||
Sbjct  237  CTTCAGATTTGAAACATGGTCAATAACAAAGAAGAGCATTCTATATACTCTTTTTCTTTT  296

Query  380  CTCTGA  385
            ||||||
Sbjct  297  CTCTGA  302


> Ahg496097 jgi|Araly1|496097|fgenesh2_kg.8__1913__AT5G59613.1
Length=728

 Score =  220 bits (119),  Expect = 6e-57
 Identities = 147/161 (91%), Gaps = 0/161 (0%)
 Strand=Plus/Plus

Query  94   ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGCTGGCCA  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1    ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG  60

Query  154  TTCCTCACCGGTTTCGCCGTCACCGGCGTTCTCATCACCAAGCTAACCGCCGGACTCACT  213
            || ||||| || ||||||||||||||||| |||||||||||||| || || |||||||| 
Sbjct  61   TTTCTCACTGGATTCGCCGTCACCGGCGTCCTCATCACCAAGCTCACGGCTGGACTCACC  120

Query  214  GAGGAAGATGCTAAGAACTCCAAGTTCGTCCAGCAACACAG  254
            |||||||| || |||||||||||||| ||||| ||||||||
Sbjct  121  GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAG  161



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18810705377


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5