BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46450.2 Length=2085 Score E Sequences producing significant alignments: (Bits) Value Ahg897457 jgi|Araly1|897457|Al_scaffold_0005_1423 2217 0.0 > Ahg897457 jgi|Araly1|897457|Al_scaffold_0005_1423 Length=1485 Score = 2217 bits (1200), Expect = 0.0 Identities = 1396/1491 (94%), Gaps = 12/1491 (1%) Strand=Plus/Plus Query 242 ATGGGGGATAATTCTGGTAGAAGTAGAAACTCTATGATGGCAACTGTTTCTTCTGGGAAA 301 ||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 ATGGGAGACAATTCCGGTAGAAGTAGAAACTCTGTGATGGCAACTGTTTCTTCTGGGAAA 60 Query 302 GAGTTGTTACCTAAAAGAAGCTTAGTAGCTGCTATTCCAAGAGCTGTTCAGCAGACAATC 361 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 GAGTTGTTACCTAAGAGAAGCTTAGTAGCTGCTATTCCAAGAGCGGTTCAGCAGACAATA 120 Query 362 TCTAAGCATGTTTCTTTTGGGAGTAATGGTAGATTTGGAAGTGGAACCGCTCGTAATGCA 421 | |||||||||||| || |||| |||||||||| |||| |||||||||| |||||||||| Sbjct 121 TATAAGCATGTTTCATTGGGGAATAATGGTAGAATTGGTAGTGGAACCGTTCGTAATGCA 180 Query 422 GCTGTGTTTCTGCTTAAAATCGCTGTTTTAGAAGTTGTTCGAAGGGTTTCAAAGGCTAAA 481 || ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||| | Sbjct 181 GCGGTGTTTCTGCTGAAAATCGCGGTTTTGGAAGTTGTTCGAAGGGTTTCGAAGGCTAGA 240 Query 482 TGTCCTCATTTGTGGAATAGTCTTCAGGCGTTGCAATGTCTTTGTTATCCTCCTCTTAAG 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGTCCTCATTTGTGGAATAGTCTTCAGGCGTTGCAATGTCTTTGTTATCCTCCTCTTAAG 300 Query 542 TGGATTCAAAGATGGGCTCCTTTCAAGGAGTTGATCAATGCAATGCAG------TTATTG 595 |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 301 TGGATTCAGAGATGGGCTCCTTTCAAGGAGTTGATCAAGGCAATGCAGTCTCAATTATTG 360 Query 596 TGTGTGATCGTTATGCAGATGTTGTCTCGGCCATTGTTGGTCATCACGATAGCTGAGGCT 655 ||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||||| Sbjct 361 TGTGTGATCGTTATGCAGATGCTGTCTCGGCCATTATTGGTCCTCACCATAGCTGAGGCT 420 Query 656 CTGACAGACCAGTCAGAGTTAAAGCAAGAAGCCTCAGGTGGTACCAATTCTCATGCATCT 715 || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 421 CTCACAGACCAGTCAGAGTTAAAGCAAGAAGCCTCAGGTGGTACCACTTCTCATACATC- 479 Query 716 TCAGAATCAGAATCACAATCTGACTCGCAGACTTTACAGTCTCCATCAGATATAAGAATT 775 | ||||||||||||||| || | ||||| | ||||||||||||||||||||||||| Sbjct 480 T-----TCAGAATCACAATCTTACCCACAGACGTCACAGTCTCCATCAGATATAAGAATT 534 Query 776 GAAGATGAGGCTCCACTTCCTGTAATTTCACAAGACTGGCTTAGAAAACTCTATGAAGAA 835 |||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| Sbjct 535 GAAGATGAGGCTCCACTTTCTGTAACTTCACAAGACTGGCTTAGGCAACTCTATGAAGAA 594 Query 836 CTGGAAAAGCAGAGACTTAGCTTACCAGAGAGACTCAATGAAGACGAGCTTCATAGATTC 895 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 595 CTGGAAAAGCAGAGACTTAGCTTGCCTGAGAGACTCAACGAAGACGAGCTTCATAGATTC 654 Query 896 TACAGGGTGTCAAATGGAGACTTCACATCCTTACTATCTTCGATAAAAAAGACAATTCAT 955 || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 655 TATAGAGTGTCAAATGGAGACTTCACATCCTTACTATCTTCAATAAAAAAGACAATTCAT 714 Query 956 TGGAGGGAGACTTACAGAATTCTTTCTGAAGAAGAACTTGAGACATGGTCAAGTTTACTC 1015 |||||||||||||||||||| || |||||||| |||||||||||||||||||||||| || Sbjct 715 TGGAGGGAGACTTACAGAATCCTATCTGAAGAGGAACTTGAGACATGGTCAAGTTTAGTC 774 Query 1016 TTTTGGCATGGATATGATAAGAACCAACGACCTTGCCTCATTGTTCGTTTGGGGCTAGCT 1075 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 775 TTTTGGCATGGATATGACAAGAACCAACGACCTTGCCTCATTGTTCGCTTGGGGCTTGCT 834 Query 1076 TTTCTAAAGTTGCCATCTCATGAGAGACCTCGTTTCGCTCAGGCAATCATATCTCAGGTA 1135 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 835 TTTCTAAAGTTGCCATCTCATGAAAGACCTCGTTTCGCTCAAGCAATCATATCTCAGGTA 894 Query 1136 GAGCACGGCGTTTTGCATCTTCTGACCCCTGAGAATTCAGAACTTACAGTGTTAGTCGAT 1195 ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| Sbjct 895 GAGCACGGCGTTTTGCATCTTTTGACCCCTGAGAATTCAGAACTTACTGTTTTAGTCGAT 954 Query 1196 TGTGAAGGATTATCTCCTCTGAGGATTCCCATGCAGATGATGAGATCTTGTTCTTCCATT 1255 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 955 TGTGAAGGATTATCTCCTCTGAGGATTCCCATGCAGATGATGAGATCTTGTTCATCCATT 1014 Query 1256 CTTCAAGATCACTTCCCTAACCGTCTTGGCTGCCTATTCATCATTCGCCTCCCTCCTGTT 1315 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1015 CTTCAAGATCACTTCCCTAACCGTCTTGGCTGCCTATTTATCATTCGCCTCCCTCCTTTT 1074 Query 1316 GTCCGTGTCATTTCCCAGACTTTCATCCAAATTCTTAGACCAACCACACGCAAGAAGCTG 1375 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 GTTCGAGTCATTTCCCAGACTTTCATCCAAATTCTTAGACCAACCACACGCAAGAAGCTG 1134 Query 1376 AGAATTGAAGGGGAAACTTTCCATCGAGTCCTCTCTGAATACCTCCAGACACTTCCTTCA 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 AGAATTGAAGGGGAAACTTTCCATCGAGTCCTCTCTGAATACCTCCAGACACTTCCTTCA 1194 Query 1436 TACCTTGGTAGCAACTGCAACTGCAAAAGATGCTCAAATCTCAACGAACAAGATCCACCA 1495 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1195 TACCTTGGCAGCAACTGCAACTGCAAAAGATGCTCAAATCTCAGCGAACAAGATCCACAA 1254 Query 1496 CAGCCACAAACACACCCAAGAAGAAAGAGAAGAAGCTCGAGTGAAACAGAGAAGCTAGAC 1555 || |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1255 CAACCACAAACACACCCAAGAAGCAAGAGAAGAAGCTTGAGTGAAACAGAGAAGCTAGAC 1314 Query 1556 GACAGCCACTGGAGTTACAATGCCCAGACACCTGATTTATCCTATGAAGACGAGCCGAGC 1615 || ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| Sbjct 1315 GATAGCCACTGGAGTTACAATGTCCAGACTCCTGATTTAGCCTATGAAGACGAGCCGAGC 1374 Query 1616 CTGAACATATGCAGCCAAGTTCTGCGAACAGCAGTCGTGTTCTTACTCATGATATGGCTC 1675 ||||||||||| |||||||| || || ||||| || |||||||| ||| ||| ||||||| Sbjct 1375 CTGAACATATGTAGCCAAGTGCTACGGACAGCGGTAGTGTTCTTGCTCGTGACATGGCTC 1434 Query 1676 TTCGGTGCACTACTAGCTGGATTTGCTGATCCTGAGAGCAGACCCTTTTAA 1726 || || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1435 TTTGGGGCACTACTAGCTGGATTCGCTGATCCTGAGAGCAGACCCTTTTAA 1485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78427814455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5